The effect of enzyme concentration on enzyme activity. Aim To investigate the effect of an increase in concentration of protease* on the rate of hydrolysis of the milk protein, casein. * The protease that is used in this investigation is trypsin Rationale and background: The pancreatic duct in cystic fibrosis sufferers frequently becomes blocked by excess sticky mucus, which reduces and can prevent the release of pancreatic enzymes into the small intestine. Continue … and explain the reason why this experiment is set! Milk powder contains a white protein called casein. When protease is added to white suspended milk powder it turns clear because …………….(good explanation that you can repeat - hopefully – in your Discussion (conclusion!) Unlike Daphnia, this expt. gives good opportunities for explanantion! Hypothesis Note that this experiment is particularly GOOD for hyothesis. As the concentration of trypsin, a protease is increased, the time for the casein solution to clear will ……………… and the rate of the reaction will ……………….. This is because, as enzyme concentration increases …………………………. Continue, with the fullest explanation you can give. Use your notes and your book and draw a predicted graph. (key words – collision, enzyme, substrate, enzyme-substrate complexes, active sites) Materials and Methodologies Note that this experiment is particularly GOOD for PLANNING because we changed the SNAB suggested method. Write out your method and pay attention to detail. Use future tense so that if the CPR paper asks for a plan, you can use this! Write this in bullet points for speed and simplicity. Eg (as a starter) I will use a light sensor connected to a data logger, and a …. Watt light bulb. The light will point into a reaction beaker of protease and milk, and the light sensor will be set up below, as shown in this diagram/photo” The light will be clamped at exactly ……… above the beaker, and the light meter will be clamped ………… from beaker. If I were to vary either of these ……. I will carry out each ‘run’ as quickly as possible as I do not want ambient light to change because ……. I will measure ……….. ml of milk and add it to the beaker I will measure ……… ml of protease, having previously mixed the following concentrations …………… I will add the protease as I start the data logger and will record the light reading in Lux every 30 s for ……………s. I have carried out a trial that suggests that it is not possible to reach the same end point with each concentration. Therefore a comparison of clarity (as shown by the light reading) after a certain period of time is more appropriate I will carry out as many repeats as time permits for each concentration of protease I will repeat for each concentration of protease, namely ………..%, ………..%, ………..%, ………..%, ………..%, ………..%, & ………..%. I will use 5ml of milk with 5ml of buffer solution, but NO protease, as a CONTROL because…………. Note that this experiment is particularly GOOD for choosing a control, and that this is NOT the same as ‘control of key variables’. Is it?? Control of key variables Note that this experiment is particularly GOOD for control of key variables, especially pH and temperature In addition to keeping the light from the bulb constant and the position of the light meter constant in relation to the reactants, as stated above, I shall keep the volume of protease at a constant ….. because ………….. (what would happen) I shall keep the volume of milk at a constant ……….. because …………….(what would happen) and I shall use milk that is of constant concentration (4%). If I were to change concentration of the milk …………(what would happen) (key words – again - collision, enzyme, substrate, enzyme-substrate complexes, active sites) I shall control pH by using buffered distilled water (at pH8, the optimum for trypsin) when I dilute the protease. This is vital because any alteration of pH will affect the experiment (add detail about rate of reaction/pH . Include the graph from last lesson or from the text book). I shall attempt to control temperature by standing my prepared beakers of milk in a water bath set at 32oC. This is close to the thermal optimum for trypsin and I have found (by trials) that this is the temperature to which the light bulb heats the two solutions. Thus I will be maintaining a constant temperature. This is important because (add detail about rate of reaction/temperature. Include the graph from last lesson or from the text book) There are great opportunities for the next bit in this expt. Make sure you read SNAB PRAC SUPPORT 2 again, and my comments on your beetroot. Precision means ………………………….. I will obtain precision by … Accuracy means ……………………………I will obtain accuracy by … Reliability means …………………………. I will try to obtain reliability by … Important: say (in the context of the above) that a stop clock will let you measure to an accuracy of =/- ?, a light sensor to +/- ……….; a thermometer to +/- ………a graduated pipette, to +/………….. The choice of a small beaker is the result of trial and error: it gives great results. Try to think why it might be better than a boiling tube or large beaker. Why is it best set up like this rather than with the light to the side? Risk assessment: Note that this experiment is particularly GOOD for risk. I am working with an enzyme therefore ………… (read and copy the risk assessment from the yellow card) I am working with a bulb adjacent to a liquid so … Independent variable= the concentration of the protease solution. Dependent variable= the time it takes for the milk solution to turn clear. Results: Important note Analysis of my sets of results showed that it was not possible to obtain a common end point. It was also difficult to choose an intermediate point in time at which point the lux values could all be compared: the higher concentrations ran to completion very quickly indeed (within 180s) and the lower concentrations took upwards of 20 minutes. When the reactions DID complete, end points were quite different. For this reason, another set of results was taken and different protease concentrations were used; 0.5%, ………. ………….. (continue). Using these concentrations it was possible to compare the light values for each protease concentration at one point in time (120s) I have chosen to display these results in a table/ spreadsheet because (copy from my notes on beetroot or from SNAB Prac Supp notes) I have put chosen to display the values for time (say where), and the values for the DV (light in lux ……………… (say where) because ……………..T values for the IV (protease concentration) I have put ……….… (say where) Graphs I have chosen to draw a line graph of protease concentration as a % (IV) against light levels in lux, (DV) after 120 secs. This graph shows the relationship between the dependent and independent variables. A line graph is appropriate because ……….. (copy what I said about beetroot!!) It is appropriate to join the dots rather than draw a LOBF because ……. I have also drawn a line graph for one particular concentration to show the time of reaction by graphing the change in light levels (lux) through time to completion. This allows me to show that I worked with precision because …………………. . I can assume that these results are accurate – ie …………..(define accuracy) because ………………… If you have graphed from Excel state the advantage of doing so. Discussion My first graph shows that the higher the concentration the ……….. light that is detected by the light sensor as the protease hydrolyses the milk solution Give as complete an account as possible. Repeat, hopefully modified in some way, your hypothesis and rationale. Note that this experiment is particularly GOOD for discussion (explanation of results. Evaluation: Ideas! NOT a fully inclusive list! Would it have been better to stop at a constant end point (in lux). Why do you think this was impossible? Was it possible to eliminate or control ambient light? Was there a heating effect from the bulb?. How would you control this? What were the sources of random error? (define this) Hint: this was why a constant end point was so difficult. Was there a source of systematic error? Finally (it’s appropriate to reflect on this in the evaluation). ARE your results accurate? Are they RELAIBLE? Do you think they are VALID? Again, define these words from PRAC SUPP SHEET 2, to help clarify what you write. Could you suggest a real improvement in the method to counteract the various faults in the experiment.