EndNote Control of Your Bibliography
The examples below show how EndNote can manage citations in a research article. Scroll down to
see the same “single-sentence article” as it would appear in the American Journal of Veterinary
Research, the Journal of Virological Methods, Equine Veterinary Journal, and Veterinary
Pathology. Each of these journals handles citations in different ways. Below these four journal
examples is a bibliography that includes the abstract of the article – annotated bibliographies can be
a convenient way to keep track of your research.
American Journal of Veterinary Research uses numbers in the article text and numbered
bibliography that avoids spaces – there is no space between the semi colon after the year or the
colon after the volume. As for most veterinary journals, journal names are abbreviated without
periods.
Recent articles written by College of Veterinary Medicine researchers at Auburn have discussed
bacteriophages,1 pregnancy-associated glycoproteins,2 transmitochondrial mice,3 equine
anaesthesia,4 and Herpes simplex virus.5
1.
2.
3.
4.
5.
Samoylova TI, Morrison NE, Globa LP, et al. Peptide phage display: opportunities for
development of personalized anti-cancer strategies. Anticancer Agents Med Chem
2006;6:9-17.
Whitlock BK, Maxwell HS. Pregnancy-associated glycoproteins and pregnancy wastage
in cattle. Theriogenology 2008;70:550-559.
Pinkert CA, Trounce IA. Generation of transmitochondrial mice: development of
xenomitochondrial mice to model neurodegenerative diseases. Methods Cell Biol
2007;80:549-569.
Schumacher J, Livesey L, DeGraves FJ, et al. Effect of anaesthesia of the palmar digital
nerves on proximal interphalangeal joint pain in the horse. Equine Vet J 2004;36:409414.
Sedlackova L, Perkins KD, Lengyel J, et al. Herpes simplex virus type 1 ICP27 regulates
expression of a variant, secreted form of glycoprotein C by an intron-retention
mechanism. J Virol 2008;82:7443-7455.
Journal of Virological Methods uses parenthetical author-date citations in the text and an
alphabetical bibliography. In the bibliography, author names are all in caps and the full name of the
journal is spelled out – in contrast to most veterinary journals which use journal abbreviations.
Recent articles written by College of Veterinary Medicine researchers at Auburn have discussed
bacteriophages (Samoylova et al. 2006), pregnancy-associated glycoproteins (Whitlock and
Maxwell 2008), transmitochondrial mice (Pinkert and Trounce 2007), equine anaesthesia
(Schumacher et al. 2004), and Herpes simplex virus (Sedlackova et al. 2008).
PINKERT, C. A., AND I. A. TROUNCE. 2007. Generation of transmitochondrial mice:
development of xenomitochondrial mice to model neurodegenerative diseases. Methods
in Cell Biology 80: 549-569.
SAMOYLOVA, T. I., N. E. MORRISON, L. P. GLOBA, AND N. R. COX. 2006. Peptide
phage display: opportunities for development of personalized anti-cancer strategies.
Anti-Cancer Agents in Medicinal Chemistry 6: 9-17.
SCHUMACHER, J., L. LIVESEY, F. J. DEGRAVES, M. C. SCHRAMME, J. HATHCOCK,
J. TAINTOR, AND J. GOMEZ. 2004. Effect of anaesthesia of the palmar digital nerves
on proximal interphalangeal joint pain in the horse. Equine Veterinary Journal 36: 409414.
SEDLACKOVA, L., K. D. PERKINS, J. LENGYEL, A. K. STRAIN, V. L. VAN SANTEN,
AND S. A. RICE. 2008. Herpes simplex virus type 1 ICP27 regulates expression of a
variant, secreted form of glycoprotein C by an intron-retention mechanism. Journal of
Virology 82: 7443-7455.
WHITLOCK, B. K., AND H. S. MAXWELL. 2008. Pregnancy-associated glycoproteins and
pregnancy wastage in cattle. Theriogenology 70: 550-559.
Equine Veterinary Journal uses parenthetical author-date format in the text with an alphabetical
bibliography. Unlike most bibliography formats, there is a blank line between each reference.
Recent articles written by College of Veterinary Medicine researchers at Auburn have discussed
bacteriophages (Samoylova et al. 2006), pregnancy-associated glycoproteins (Whitlock and
Maxwell 2008), transmitochondrial mice (Pinkert and Trounce 2007), equine anaesthesia
(Schumacher et al. 2004), and Herpes simplex virus (Sedlackova et al. 2008).
Pinkert, C.A. and Trounce, I.A. (2007) Generation of transmitochondrial mice: development
of xenomitochondrial mice to model neurodegenerative diseases. Methods Cell Biol. 80,
549-569.
Samoylova, T.I., Morrison, N.E., Globa, L.P. and Cox, N.R. (2006) Peptide phage display:
opportunities for development of personalized anti-cancer strategies. Anticancer Agents
Med. Chem. 6, 9-17.
Schumacher, J., Livesey, L., DeGraves, F.J., Schramme, M.C., Hathcock, J., Taintor, J. and
Gomez, J. (2004) Effect of anaesthesia of the palmar digital nerves on proximal
interphalangeal joint pain in the horse. Equine Vet. J. 36, 409-414.
Sedlackova, L., Perkins, K.D., Lengyel, J., Strain, A.K., van Santen, V.L. and Rice, S.A.
(2008) Herpes simplex virus type 1 ICP27 regulates expression of a variant, secreted
form of glycoprotein C by an intron-retention mechanism. J. Virol. 82, 7443-7455.
Whitlock, B.K. and Maxwell, H.S. (2008) Pregnancy-associated glycoproteins and pregnancy
wastage in cattle. Theriogenology 70, 550-559.
Veterinary Pathology uses numbers in the text that are arranged according to the numbered
alphabetical list in the bibliography. This is a challenging format to use. Note how the numbered
reference that appears first in the text (#2) corresponds to the second reference in the bibliography.
The lack of a period after the numbers on the left hand is not a mistake – that is the format used by
Veterinary Pathology.
Recent articles written by College of Veterinary Medicine researchers at Auburn have discussed
bacteriophages,2 pregnancy-associated glycoproteins,5 transmitochondrial mice,1 equine
anaesthesia,3 and Herpes simplex virus.4
1
2
3
4
5
Pinkert CA, Trounce IA: Generation of transmitochondrial mice: development of
xenomitochondrial mice to model neurodegenerative diseases. Methods Cell Biol
80:549-569, 2007
Samoylova TI, Morrison NE, Globa LP, Cox NR: Peptide phage display: opportunities
for development of personalized anti-cancer strategies. Anticancer Agents Med Chem
6:9-17, 2006
Schumacher J, Livesey L, DeGraves FJ, Schramme MC, Hathcock J, Taintor J, Gomez
J: Effect of anaesthesia of the palmar digital nerves on proximal interphalangeal joint
pain in the horse. Equine Vet J 36:409-414, 2004
Sedlackova L, Perkins KD, Lengyel J, Strain AK, van Santen VL, Rice SA: Herpes
simplex virus type 1 ICP27 regulates expression of a variant, secreted form of
glycoprotein C by an intron-retention mechanism. J Virol 82:7443-7455, 2008
Whitlock BK, Maxwell HS: Pregnancy-associated glycoproteins and pregnancy wastage
in cattle. Theriogenology 70: 550-559, 2008
Bibliography with abstract – This can be a valuable format for your own personal use. An
annotated bibliography is a great way to look more closely at what your literature searches have
identified as potentially useful articles.
Samoylova, T. I., N. E. Morrison, et al. (2006). "Peptide phage display: opportunities for
development of personalized anti-cancer strategies." Anti-Cancer Agents in Medicinal
Chemistry 6(1): 9-17.
Personalized medicine is critical for cancer patients, because (1) cancer is a highly
heterogeneous disease with major molecular differences in the expression and distribution of
tumor cell surface markers among patients with the same type and grade of cancer, (2)
cellular mutations tend to accumulate as cancer progresses, further increasing tumor
heterogeneity, and (3) currently used cancer therapies often are toxic to normal cells,
causing severe side effects rarely seen in other diseases. To prevent side effects and to
improve effectiveness, cytotoxic therapies should be targeted and each patient should be
profiled for the presence of cancer targets before the therapy is administered. Phage display
technology utilizes combinatorial libraries of proteins expressed on phage particles that can
be selected for specific binding to cancer cells. Such cancer-specific molecules can be used
in a variety of applications, including identification of cell-specific targeting molecules;
identification of cell surface biomarkers; profiling of specimens obtained from individual
cancer patients, and the design of peptide-based anti-cancer therapeutics for personalized
treatments. This review is focused on peptide phage display strategies that target cell
surfaces because many biomarkers important in cancer are differentially expressed
molecules located on the outside of the cell membranes.
Whitlock, B. K. and H. S. Maxwell (2008). "Pregnancy-associated glycoproteins and pregnancy
wastage in cattle." Theriogenology 70: 550-559.
Accurate diagnosis of non-pregnancy and prompt re-enlistment of "non-pregnant" cattle into
an appropriate breeding protocol are essential components of successful reproductive
programs. Various methods aimed at improving detection of pregnancy and identification of
non-pregnant cows earlier and more accurately are the focus of previous review articles and
beyond the scope of this manuscript. Recently, the ability to measure pregnancy-associated
glycoproteins (PAGs) in cattle has changed how pregnancy and, more importantly, nonpregnancy are detected. This presentation provides an overview of current research on the
pregnancy-associated glycoprotein family, and how these glycoproteins might be utilized as
indicators of pregnancy wastage in cattle.
Pinkert, C. A. and I. A. Trounce (2007). "Generation of transmitochondrial mice: development
of xenomitochondrial mice to model neurodegenerative diseases." Methods in Cell Biology 80:
549-69.
[There is no abstract in PubMed for this article.]
Schumacher, J., L. Livesey, et al. (2004). "Effect of anaesthesia of the palmar digital nerves on
proximal interphalangeal joint pain in the horse." Equine Veterinary Journal 36(5): 409-14.
REASONS FOR PERFORMING STUDY: Anaesthesia of the palmar digital nerves is
claimed to attenuate lameness in some horses that are lame because of pain in the proximal
interphalangeal (PIP) joint. OBJECTIVE: To determine the response of horses with pain in
the PIP joint to anaesthesia of the palmar digital nerves. METHODS: Horses were video
recorded trotting before and after induction of pain in the PIP joint and 10 mins after
anaesthesia of the palmar digital nerves. The palmar digital nerves were anaesthetised 3
times at different sites, and the video recorded gaits were scored subjectively. RESULTS:
The median lameness score of gaits after administration of 2% mepivacaine 1 cm proximal
to the cartilages of the foot was not significantly different from the median lameness score
before anaesthesia of the palmar digital nerves (P > or = 0.05), although that of 1 of 6 horses
improved markedly. The median lameness score was significantly (P < or = 0.05) improved
after mepivacaine was administered 2 and 3 cm proximal to the cartilages of the foot.
CONCLUSIONS: The PIP joint is unlikely to be anaesthetised when the palmar digital
nerves are anaesthetised at the proximal margin of the cartilages of the foot. POTENTIAL
RELEVANCE: Pain within the PIP joint cannot be excluded as a cause of lameness when
lameness is attenuated by anaesthesia of the palmar digital nerves at any site proximal to the
proximal margin of the cartilages of the foot.
Sedlackova, L., K. D. Perkins, et al. (2008). "Herpes simplex virus type 1 ICP27 regulates
expression of a variant, secreted form of glycoprotein C by an intron-retention mechanism."
Journal of Virology 82: 7443-7455.
We previously showed that herpes simplex virus type 1 (HSV-1) immediate-early (IE)
protein ICP27 can post-transcriptionally stimulate mRNA accumulation from a transfected
viral late gene encoding glycoprotein C (gC) (Perkins, K.D., J. Gregonis, S. Borge, and S.A.
Rice, J. Virol. 77:9872-9884, 2003). We began this study by asking whether ICP27
homologs from other herpesviruses can also mediate this activity. Although the homologs
from varicella-zoster virus (VZV) and human cytomegalovirus (HCMV) were inactive, the
homolog from bovine herpesvirus 4 (BHV-4), termed HORF1/2, was a very efficient
transactivator. Surprisingly, most of the mRNA produced via HORF1/2 transactivation was
225 nucleotides shorter than expected due to the removal of a previously undescribed intron
from the gC transcript. We found that the gC mRNA produced in the absence of
transactivation was also mostly spliced. In contrast, gC mRNA produced by ICP27
transactivation was predominantly unspliced. Based on these results, we conclude that
ICP27 has two distinct effects on the transfected gC gene: it i) stimulates mRNA
accumulation, and ii) promotes the retention of an intron. Interestingly, the spliced transcript
encodes a variant of gC that lacks its transmembrane domain and is secreted from
transfected cells. As the gC splicing signals are conserved amongst several HSV-1 strains,
we investigated whether the variant gC is expressed during viral infection. We report here
that both the spliced transcript and its encoded protein are readily detected in Vero cells
infected with three different laboratory strains of wild-type HSV-1. Moreover, the variant
gC is efficiently secreted from infected cells. We have designated this alternate form of the
protein as gCsec. As the extracellular domain of gC is known to bind heparan sulphate (HS)containing proteoglycans and to inhibit the complement cascade via an interaction with
complement component C3b, we speculate that gCsec could function as a secreted virulence
factor.