Genetics 06 - India Institute Of Medical Science

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Genetics Sub-division

Department of Pediatrics,

All India Institute of Medical Sciences,

New Delhi – 110 029

Faculty & Staff (Permanent) :

Dr. Madhulika Kabra

Additional Professor &

Officer-in-Charge,

Genetics Unit,

Department of Pediatrics,

AIIMS

Email : madhulikakabra@hotmail.com

, mkabra_aiims@yahoo.co.in

Molecular Genetics :

Dr. Manju Ghosh

Dr. Madhumita Roy Chowdhary

Ms. Sadhna Arora

Ms. Monica Tiwari

Cytogenetics :

Mr. Vinod Kumar

Scientist

Scientist

Lab. Technician

Lab. Technician

Lab. Technician

Biochemical Genetics :

Dr. Suman Vashisht

Ms. Ranjana Srivastava

Scientist

Technical Officer

Mr. K.S. Rawat

Ms. Bhumika Rakwal

Ms. Bimla Saxena

Technical Asst.

Lab. Technician

Lab. Assistant

Mr. Mukesh Kumar Lab. Assistant

Division of Genetics (Department of Pediatrics)

Clinical Cytogenetics Biochemical Molecular

Genetics Genetics Genetics

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Background :

Genetics unit is dision of the Department of Pediatrics, was started in 1966. Over the years this unit has developed into one of the premier human genetic units in the country and has been designated as a WHO collaboration center and center of excellence for training by the

Ministry of Health.

Clinical Services :

We are actively engaged in service, research, teaching and training in the field of human genetics. The unit runs a genetic counseling service three times a week and counsels about

2000 patients every year. The unit has expertise in dysmorphology and computer programs are extensively utilized for making clinical diagnosis. Facilities for diagnosis by cytogenetic, molecular and biochemical tests are available. Prenatal screening for thalassemia carrier status and maternal serum screening for neural tube defects and aneuploidies are regularly done. Prenatal diagnostic services for chromosomal disorders e.g.

Down syndrome, Fragile X syndrome(both cytogenetic and Molecular studies), biochemical disorders, aminoacid disorders, storage disorders and common single gene disorders, like thalassemia, Duchenne muscular dystrophy, hemophilia, spinal muscular atrophy and cystic fibrosis, are available. We have also standardized the molecular tests on analysis of Indian patients with congenital adrenal hyperplasia, albinism., nonsyndromic deafness (Connexin 26), Xmn polymorphism, Fetal Rh genotyping and, MTHFR polymorphism, Achondroplasia, Hypochondroplasia, Thanatophoric dysplasia. We are in process of standardizing tests for Prader willi, Angelman syndrome, Wilsons disease and mitochondrial disease.

Laboratory Facilities :

A. DNA DIAGNOSTICS & PRENATAL DIAGNOSIS

1.

Beta-Thalassemia . Diagnosis of all known Indian mutations numbering 12.

Linkage studies (PCR-based). Prenatal diagnosis on Chorionic villus samples, amniotic fluid cells and cord blood. Studies for XMN Polymorphism.

2.

Sickle cell disease and hemoglobin E . Similar facilities as for betathalassemia.

3.

Duchenne muscular dystrophy . Deletion screening of 24 exons. CA repeat analysis for detection of carries. Prenatal diagnosis based on deletion screening / CA repeat analysis.

4.

Spinal muscular atrophy . Diagnosis and prenatal diagnosis of affected subjects (homozygotes) – Exon 7 & 8 deletion of SMN gene and Exon 5 deletion of NAIP gene.

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5.

2.

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5.

Fragile X syndrome . PCR-based exclusion of fragile X A and E syndrome.

6.

Cystic Fibrosis . Diagnosis of common mutations. Prenatal diagnosis by allele specific amplification and linkage. Analysis of rare mutations by SSCP.

7.

Hemophilia A and Hemophilia B . Carrier screening and prenatal diagnosis using RFLP analysis.

8.

Congenital adrenal hyperplasia . Testing for 6 common mutations and prenatal diagnosis.

9.

Oculo-cutaneous albinism . PCR based test for common mutations.

10.

Rh typing on amniotic fluid / blood by PCR.

11.

Non-Syndromic hereditary hearing loss . PCR based test for known Indian mutations.

12.

Achondroplasia and hypochondroplasia molecular studies.

B. CHROMOSOMAL DISORDERS

1.

Peripheral blood cultures

2.

Prenatal diagnosis of chromosomal disorder

C. BIOCHEMICAL DISORDERS

1.

Aminoacid disorders :

Chemical tests in urine

Chromatography urine/plasma – 1 D and 2 D

Quantification of aminoacids by HPLC (being set-up)

1 st

Trimester screening being standardized

Mucopolysaccharidoses

Toludine blue spot test on urine

24-hr quantification of MPS in urine

Eletrophoresis for identification

Maternal serum screening (2 nd Trimester)

Alpha fetoprotein (MS-AFP)

Human Chorionic gonadotropin (hCG)

Unconjugated estriol

Galactossemia :

Screening by Beutler spot test

Quantitative assay

Enzyme assays in leukocytes/plasma for

Tay Sach disease, Sandhoff disease, GM1 gangliosidosis

Metachromatic leukodystrophy

Gaucher disease, Niemann Pick disease, Pompe disease

Hurler syndrome (MPS I)

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6. Prenatal diagnostic facilities for biochemical disorders

Academic activities and training :

1.

DBT workshop on Prenatal and postnatal diagnosis of Genetic disorders in collaborative with Department of Anatomy and Hematology, AIIMS, once every year February / March.

2.

Training facilities : Provision for short term / long training. Applications through Dean, AIIMS.

Major research activities past & ongoing :

S. No.

1.

2.

3.

Years Title and Granting Agency

1969 - 71 Study of sex chromatin in newborns

(I.C.M.R.)

1972 - 74 In vitro lymphoblastoid transformation with purified protein derivative as a diagnostic test in tuberculosis (I.C.M.R.)

1974 – 75 Chromosomal studies in protein caloric malnutrition (C.S.I.R.)

4.

5.

1975 - 76 Study of sex chromosomal aneuploidy among criminals in Tihar Jain (Medical

Research Center, Mumbai)

1976 - 78 Action-oriented research of tribal communities in Andaman Islands (Ministry of Health & Family Welfare)

6.

7.

8.

9.

10.

11.

12.

13.

1979 - 81 Study of alpha-fetoprotein in maternal serum and its correlation with perinatal morbidity and mortality (I.C.M.R.)

1980 - 81 Studies on etiology of jaundice in the newborn (A.I.I.M.S.)

1980 - 82 Action-oriented research on genetic disorders among tribal communities in

Bastar district of Madhya Pradesh

(I.C.M.R.)

1980 - 82 Immunogenetic studies in disorders of sexual development (D.S.T.)

1981 - 84 Multi-centric studies on genetic causes of mental retardation (I.C.M.R.)

1984 - 87 Multi-centric studies an genetic counseling and antenatal diagnosis (I.C.M.R.)

1985 - 86 Genetic studies in oral cancer (A.I.I.M.S.)

1987 - 89 Multi-centric Task Force in Genetics :

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23.

24.

25.

26.

14.

15.

16.

17.

18.

19.

20.

21.

22.

27.

28.

1987 - 89 Strategies to save the primitive tribal communities in Andaman & Nicobar Islands from extinction (Planning Commission)

1988 a) Prevention of neural tube defects b) Identifying new syndromes in

India c) Anthropometry in areas of complex development (I.C.M.R.)

Investigation of cause of splenomegaly among the Paharia tribal community in

Suderpahari block, Bihar (I.C.M.R.)

1987 – 89 Prevention and management of Mental retardation in under-privileged communities communities (Dept. of Science &

Technology)

1991 - 96 Biotechnology for improving the health of

SC/ST communities (D.B.T.)

1994 – 95 Evaluation of laboratory methods for diagnosis of meningococcal meningitis

(A.I.I.M.S.)

1993 - 97 Study of malformations and Down syndrome in India – A multricentric study

(D.A.E.)

1995 – 03 Research & development of clinical cum molecular genetics (D.B.T.)

1996 – 97 Medico-Genetic and Nutritional problems of

SC communities in Orissa (Ministry of

Welfare)

1996 – 99 Control programme for thalassemia by antenatal screening (multicentric) (Indian

Council of Medical Research)

1997 – 06 Gene mapping of non-syndromic hereditary hearing impairment (Indo-US, NIH)

1998 – 02 Control program for Sickle cell disease in

Tribal population of Kerala (D.B.T.)

1999 - 00 Establishing CF services at New Delhi

International CF Association

1999 - 00 A Clinical study to assess the immunogenicity and reactogenicity of MMR vaccine Serum Institute of India Ltd., Pune

2000 - 03 Study on the chromosomal Q-

Heterochromatin region in the human population living on high altitudes of India

(D.R.D.O)

2000 - 04 To study the genetic profile of Indian children with cystic fibrosis (D.B.T.)

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31.

32.

33.

34.

29.

30.

35.

36.

37.

38.

39.

40.

2001 - 03 Early intervention for young children with

Down syndrome (A.I.I.M.S.)

2002 - 04 To study the effect of seasonal changes on growth of Indian children with cystic fibrosis supported by International cystic

Fibrosis (mucovicsidosis) Association

(Cystic Fibrosis Worldwide)

2004 – 05 Growth Hormone replace-ment in Turner’s

Syndrome (International Cystic Fibrosis)

Ongoing Role of Genetic Factors in Chronic

Pancreatitis (LG Company)

Ongoing Molecular studies for Wilsons Disease

(CSIR Fellowship)

Ongoing Cytogenetics and Molecular studies in

Chromosomal Breakage syndromes (CSIR

Fellowship)

Ongoing Survey of Prenatal Diagnostic Practices in

India as a Part of Multi Country Survey –

Developing Methods to Facilitate Informed

Choice Taking Into Account Concordance

Between the Principles that Govern the

Undergoing of Prenatal Tests and Practice

Across Europe and Beyond (SAFE)

Ongoing Economic modeling study

Non-invasive (NI) RhD testing in Europe &

Asia (SAFE)

Ongoing Noninvasive prenatal diagnosis of fetal Rh status and Beta Thalassemia using cell free fetal DNA in maternal circulation (SAFE)

Ongoing Diagnosis & counseling of genetic disorders testing Cytogenetics and molecular methods

(SAFE)

Ongoing Molecular Genetic Studies in Osteogenesis

Imperfecta (CSIR Fellowship)

Ongoing Molecular Genetic studies in

Leukodystrophy (UGC Fellowship)

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