Supplemental Material HPLC methods for Cytarabine and Daunorubicin For cytarabine analysis, 10 µL of plasma samples were mixed with 50 µL of methanol by vortexing, and added to 440 µL of HPLC grade water. The mixture was vortexed and centrifuged at 3200g for 10 minutes and 20 μL of supernatant was injected onto the HPLC for quantitation. For daunorubicin analysis, 10 µL of plasma samples were mixed with 490 µL of acidified methanol (acetic acid:methanol = 1:5, v/v) by vortexing. The mixture was centrifuged at 3200g for 10 minutes and 20 μL of supernatant was injected onto the HPLC for quantitation. Cytarabine was quantified using a Phenomenex Luna C18(2) reverse phase analytical column with a UV detector set to 273.7 nm. The mobile phase was 1 mL/min 25 mM ammonium acetate (pH 4.8). Daunorubicin was evaluated using a Phenomenex Luna C18(2) reverse phase analytical column with a multi fluorescence detector set at excitation/emission wavelengths of 480/560 nm. The mobile phase was 1 mL/min 25 mM ammonium acetate:acetonitrile (67.5:32.5, v/v at pH 4.8). For free drug analysis, cytarabine and daunorubicin were administered at the free cocktail MTD of 600 mg/kg and 9 mg/kg respectively. Samples were injected i.v. and blood was collected at 5, 15 and 30 minutes, 1 hour, 2 hour and 8 hours and plasma isolated as outlined previously. Free cytarabine was stabilised by addition of tetrahydrouridine then samples were frozen at -20ºC until analysis. The HPLC method used in this manuscript was suitable for separating daunorubcin from the active metabolite daunorubicinol. This metabolite was detected at very low levels in the plasma of mice treated with free drug cocktail but was absent in CPX-351 treated mice. At 2 hours after intravenous administration of the free drug cocktail, neither daunorubicin or its metabolite were detectable. Estimation of bone marrow volume Femurs were obtained from age-matched CD-1 nude mice. The femurs were fixed in formalin, decalcified using hydrochloric acid/formic acid, processed for histology and stained with hematoxylin and eosin (WaxIt Inc., Vancouver, BC). Major and minor dimensions from internal cross sections were determined using an inverted microscope fitted with a stage micrometer. The average cross sectional area (A) was determined using the formula for an ellipse where A = π (a) (b) in which a = ½ major dimension and b = ½ minor dimension. The average femur length post bone marrow collection was determined using digitally enlarged photographs. The area multiplied by the length was used to calculate the volume. The average area of the ovoid bone marrow cross sections was 0.76 mm2 and the average length of the femurs post bone marrow collection was 11.7 mm resulting in an average volume of 8.9 L/femur. Analysis of CPX-351 Therapeutic Activity for In Vivo Synergy In order to elucidate the degree to which CPX-351 increased the therapeutic activity of cytarabine:daunorubicin treatment, and assess the contribution of the two agents to the overall therapeutic effect of CPX-351, we utilized a more stringent format of the P388 leukemia tumor model whereby initiation of the Q3Dx3 i.v. treatment was delayed until day 4 post tumor inoculation rather than on day 1 which is typically employed for this model. Given the rapid doubling time of P388 tumor cells (16 hours), this delay increased the tumor burden by approximately 50-fold at the time of treatment. When CPX-351 was administered at 10:4 mg/kg (0.8 MTD) cytarabine:daunorubicin in the high stringency P388 model, a median survival time of 38 days (increase in life span, ILS, of 443%) was obtained, with a long-term (day 55) survival rate of 17% (1/6 mice, Figure 4A). In comparison, matched doses of liposomal cytarabine (10 mg/kg) and liposomal daunorubicin (4 mg/kg) administered individually provided significantly reduced antitumor activity as reflected by ILS values of 186% and 43%, respectively. The degree of antitumor activity obtained after the final treatment was estimated using the following calculation: Log cell kill (LCK) = [T-C]/3.32(Td) where TC is the difference in median survival time between treatment and control groups and Td is the tumor doubling time in days, which for P388 is 0.66 [1]. Liposomal cytarabine (10 mg/kg) and liposomal daunorubicin (4 mg/kg) each individually provided LCK values of 5.9 and 1.4, respectively. In comparison, CPX-351 dosed at 10:4.4 mg/kg cytarabine:daunorubicin provided a LCK value of > 10, the theoretical maximum value obtainable. If the enhanced antitumor activity observed with CPX-351 over the individual liposomal drugs was additive, a LCK value for CPX-351 of approximately 7.3 would be predicted as the sum of the individual values. The fact that the LCK for CXP351 was approximately three logs higher than that predicted for additivity is consistent with strong in vivo synergy. Since the log cell kill estimations described above may be complicated by the multiple day treatment regimen used here, we also compared the antitumor activity of CPX-351 with individual liposomal drugs based on the number of tumor cells remaining after final treatment. This could be determined by correlating treatment-induced survival extension with the median survival times for P388 tumor cell inoculums titrated between 10 cells and 108 cells in the absence of treatment [2]. For individual liposomal cytarabine (10 mg/kg) and liposomal daunorubicin (4 mg/kg) treatment, the residual tumor burden post treatment was estimated to be 1.6 x 104 and 5.0 x 108 tumor cells, respectively. In comparison, the median survival time of 38 days for CPX-351 is beyond that predicted without curing mice and consequently the average residual tumor burden after final treatment was estimated to be between 1-10 cells per mouse which is consistent with the occurrence of 1/6 long term survivors in this treatment group (Figure 4A). This analysis also revealed approximately a three log increase in antitumor activity for CPX-351 over that predicted for additive activity of the individual encapsulated cytarabine and daunorubicin components. Weight Loss Data for Efficacy Studies All studies were conducted within MTD doses as defined survival in the absence of significant tumor burden with < 15% body weight loss nadir lasting < 2 days. Druginduced weight loss associated with MTD doses was sometimes obscured by the progressive increase in ascitic fluid, as occurred in the P388, L1210, WEHI models; prior MTD studies were relied upon for accurate equitoxic dosing of the efficacy studies. Drug-related weight loss nadirs generally occurred between 1 and 3 days post final injection except in the L1210 tumor model where the nadir weight loss occurred 6 days post final injection for the high-dose liposomal daunorubicin. Weight loss occurring at later times was noted in the CCRF-CEM and the HL-60 tumor models and was associated with localized and/or disseminated tumor burden that resulted in mortality. Figure 3 Weight loss data 20 % Weight loss 10 0 -10 -20 0 10 20 30 40 50 60 70 Day of Experiment Saline Control Cytarabine:Daunorubicin 15:3 mg/kg (12:1) Cytarabine:Daunorubicin 10:4 mg/kg (5:1) Cytarabine:Daunorubicin 7.7:10 mg/kg (3:1) Cytarabine:Daunorubicin 12.5:5.4 mg/kg (1:1) Figure 4A Weight loss data Figure 4B Weight loss data 30 20 20 % Weight loss % Weight loss 10 0 -10 10 0 -10 -20 -20 0 10 20 30 40 Day of Experiment Saline Control CPX-351 (10:4.4 mg/kg) Liposomal Cytarabine (10 mg/kg) Liposomal Daunorubicin (4.4 mg/kg) 50 0 10 20 30 40 Day of Experiment Saline Control CPX-351 (12.5:5 mg/kg) Liposomal Daunorubicin (10 mg/kg) Liposomal Cytarabine (15 mg/kg) Free Drug Cocktail (30:12 mg/kg) Free Drug Cocktail (600:9 mg/kg) 50 Figure 5B Weight loss data 20 20 10 % Weight loss 30 10 0 0 -10 -10 -20 -20 -30 0 10 20 30 40 50 60 70 80 90 20 30 40 Day of Experiment 50 60 70 Day of Experiment Saline Control CPX-351 (12:5.3 mg/kg) Ratio Matched Cocktail (12:5.3 mg/kg) Dose Pushed Cocktail (300:4.5 mg/kg) Saline Control CPX-351 (10:4.4 mg/kg) CPX-351 (6.3:2.5 mg/kg) Dose Pushed Cocktail (300:4.5 mg/kg) Table 1 Weight loss data 10 0 % Weight loss % Weight loss Figure 5A Weight loss data -10 -20 10 20 30 40 Day of Experiment Saline Control CPX-351 (5:2 mg/kg) CPX-351 (2.5:1 mg/kg) Dose Pushed Cocktail (200:3 mg/kg) Ratio Matched Cocktail (10:4 mg/kg) References 1) Corbett T, Polin L, LoRusso P, Valeriote F, Panchapor C, Pugh S et al. In vivo methods for screening and preclinical testing: Use of rodent solid tumors for drug discovery. In: Teicher BA, editor. Anticancer drug development guide: preclinical 80 screening, clinical trials, and approval. Totowa, New Jersey: Humana Press; 1997. p. 99-124. 2) Waud WR. Murine L1210 and P388 leukemias. In: Teicher BA, editor. Anticancer Drug Development Guide. New Jersey: Humana Press;1997.p.59-74.