Tissue imaging and analysis of structural changes and functional consequences of the liver lobular/sinusoidal system during fibrosis Iryna Ilkavets, Honglei Weng, Steven Dooley Molecular Hepatology-Alcohol dependent Diseases, II. Medical Clinic, Faculty of Medicine at Mannheim, University of Heidelberg, Germany Chronic liver injury from different etiologies, including hepatitis viral infection, cholestasis, alcoholic or non alcoholic steatohepatitis and drug intoxication, is characterized by inflammed and fibrotic liver tissue that regenerates or progresses to cirrhosis and end stage disease, a major cause of mortality and morbidity worldwide. Liver damage is characterized by the presence of inflammatory cells and activated hepatic stellate cells (HSCs) and loss of hepatocyte shape and function. The 3D architecture and therewith spatiotemporal processes (cell morphology and extracellular matrix (ECM) remodelling, e.g., expression of, among others, collagens and matrix metalloproteinases, as well as function of the hepatic sinusoid/liver lobule) is transiently or chronically altered. We aim at characterizing acute or chronically injured liver tissue using high resolution tissue imaging (Leica bright field and confocal scanning microscopes) and digital texture analysis to monitor spatiotemporal changes of liver architecture and relate these to functional/pathophysiological consequences. Although many therapeutic approaches show antiinflammatory/antifibrotic activity in animal disease models, there is no effective pharmaceutical intervention at present, mainly because of disease stage dependently differing functions of the targeted components. To overcome this limitation, a spatio-temporal resolution of liver damage is required. We optimized and standardized tissue processing for quantitative IHC/IF estimating (i) cell populations of the liver sinusoid/lobule, e.g., hepatocytes (transferrin), hepatic stellate cells (SMA), Kupffer (CD68), and progenitor cells (CD19), (ii) cell proliferation (Ki67, PCNA), (iii) epithelial-to-mesenchymal transition (S100A4, Twist, Snail, ZO-1, ECadherin, Catenin) and (iv) TGFβ- (pSmad1/2/3) and Notch- (Jag1) signaling and (v) cell activation (SMA, CTGF, Wisp1) in mouse and human liver tissues. We performed systematic statistical analyses of micrographs from bright field and confocal laser scanning microscopy on multilobular, lobular and sublobular scales. Quantification of different cell types and their properties was done with ImageJ. In image processing, we defined criteria encompassing variations in cell morphology. Further, we applied a scene segmentation approach to detect and quantify changes in cell size, cell shape, and specific marker signature. A catalogue and SOPs of imaging markers for liver (human and mouse) were generated. This will serve us as background for machine learning and multiscale tissue modelling purposes. Data will be further applied to identify novel digital tissue markers for improved diagnosis, prognosis and to predict responses to therapy of liver chronic diseases.