Sources of Genes and Sequences
SoxR gene
GenBank Escherichia coli E24377A
http://www.ncbi.nlm.nih.gov/nuccore/NC_009801.1/from=4616553&to=4617017&report=fasta
SoxS Promoter- taken from paper
http://iai.asm.org/cgi/reprint/73/5/2958?maxtoshow=&HITS=10&hits=10& RESULTFORMAT
=&fulltext=coli&searchid=1&FIRSTINDEX=520&resourcetype=HWFIG
Pseudomonas aeruginosa SoxR Does Not Conform to the Archetypal Paradigm for SoxRDependent Regulation of the Bacterial Oxidative Stress Adaptive Response ~Palma et al.
Blh gene – altered for restriction sites
http://www.jbc.org/cgi/reprint/M109.002618v1
In vitro characterization of a recombinant Blh protein from an uncultured marine bacterium as
a β-carotene 15,15′-dioxygenase ~Kim et al.
RALDH II gene - altered for restriction sites
http://www.jbc.org/cgi/reprint/271/27/16288
Cloning of a cDNA Encoding an Aldehyde Dehydrogenase and Its Expression in Escherichia
coli ~Xianshu Wang, Peter Penzes, and Joseph L. Napoli‡
IL-6 + HylA (hIL-6 hlyAs)- altered for restriction sites
Compilation of several papers
1. http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WPJ-46HJJB8C&_user=145269&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_
searchStrId=951971391&_rerunOrigin=google&_acct=C000012078&_version=1&_url
Version=0&_userid=145269&md5=2b9264d8e315a6fcc14bf01746c0382f
Cloning and hemolysin-mediated secretory expression of a codon-optimized synthetic human
interleukin-6 gene in Escherichia coli
~Yuanyi Li, Carol X. Chen1, Bernd-Ulrich von Specht and Heinz P. Hahn
2. http://www.springerlink.com/content/q314gph35300u261/
Analysis of the haemolysin secretion system by PhoA-HlyA fusion proteins
~J. Hess, I.Gentschev, W. Goebel and T. Jarchau
3. http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T39-3W269GC2M&_user=145269&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c
&_searchStrId=951974403&_rerunOrigin=google&_acct=C000012078&_version=1&_
urlVersion=0&_userid=145269&md5=7236e3bb86e98de152d98afbbd672be5
Development of antigen-delivery systems, based on the Escherichia coli hemolysin secretion pathway
~Ivaylo Gentschev, Hans Mollenkopf , Zeljka Sokolovic, Jorgen Hess, et al.
4. http://www.springerlink.com/content/k764100h61145477/
Mutations affecting activity and transport of haemolysin in Escherichia coli
~Albrecht Ludwig, Monika Vogel and Werner Goebel
trp-operon- altered for restriction sites
http://www.pnas.org/content/75/11/5580.full.pdf?ck=nck
Naturally occurring promoter down mutation: Nucleotide sequence of the trp
promoter/operator/leader region of Shigella dysenteriae 16
~Giuseppe Miozzari and Charles Yanofsky
TrpR- trp repressor
GenBank Escherichia coli IAI1
http://www.ncbi.nlm.nih.gov/nuccore/218552585?from=4690442&to=4690768& report=g
bwithparts
TolC gene- altered for restriction sites and unknown portion of sequence
GenBank Escherichia coli str. K-12 substr. MG1655
http://www.ncbi.nlm.nih.gov/nuccore/NC_000913.2/from=3176137&to=3177618&report=fasta
HylR gene- altered for restriction sites
http://www.jbc.org/cgi/reprint/271/27/16288
Cloning of a cDNA Encoding an Aldehyde Dehydrogenase and Its Expression in Escherichia
coli ~Xianshu Wang, Peter Penzes, and Joseph L. Napoli‡
HylC gene
GenBank E. coli str. CFT073
http://www.ncbi.nlm.nih.gov/nuccore/NC_004431.1/from=3418210&to=3418884&report=fasta
HylB gene- altered for restriction sites
GenBank E. coli str. CFT073
http://www.ncbi.nlm.nih.gov/nuccore/NC_004431.1/from=3422041&to=3424164&report=fasta
HylD gene- altered for restriction sites
GenBank E. coli str. CFT073
http://www.ncbi.nlm.nih.gov/nuccore/NC_004431.1/from=3424183&to=3425619&report=fasta
Crt B, E, I, Y genes- taken out separately though **CrtI altered for restriction sites
GenBank Erwinia Uredovora str. - accession no. D90087
http://www.ncbi.nlm.nih.gov/nuccore/22474502?ordinalpos=1&itool=EntrezSystem2.PEntrez.
Sequence.Sequence_ResultsPanel.Sequence_RVDocSum