BIO 150 Study Guide to accompany Forensic Biology by Richard Li (2008) Chapter 21: Mitochondrial DNA Profiling 1. MtDNA is _____________________ inherited. a. Paternally b. Maternally c. Not d. Filiternally 2. At a crime scene a hair shaft with no root is recovered. Which of the following types of analysis would be most useful? a. RFLP b. rDNA c. Y-STR d. MtDNA 3. A clandestine gravesite is located in a rural area and the remains consist of bones. Which of the following types of analysis would be most useful in identifying the victim? a. RFLP b. rDNA c. Y-STR d. MtDNA 4. These are defined as subcellular organelles which are energy-generating components of cells: a. Nucleus b. Mitochondria c. Genomes d. Loci 5. Which of the following is presently used as the standard for sequence comparisons with regard to the mitochondrial genome: a. Revised Cambridge reference sequence b. Cambridge reference sequence c. Harvard reference sequence d. Revised Harvard reference sequence 6. The mitochondrial genome consists of how many genes: a. 30 b. 37 c. 23 d. 22 7. The bones of a missing female victim have been recovered. Who should the police collect a DNA standard from to attempt to identify the remains using mtDNA? a. The victim’s father b. The victim’s brother c. The victim’s husband d. The victim’s step-mother 8. The most polymorphic region of mtDNA is located here: a. H-Strand b. c. d. 9. L-Strand A-Loop D-Loop Which of the following is one of the two most commonly analyzed polymorphic regions of the human mtDNA genome? a. Hypervariable region II b. Hypervariable region III c. H-Strand d. D-Loop 10. This is defined as the presence of two nucleotides at a single site as overlapping peaks in a sequence electropherogram: a. Length heteroplasmy b. Sequence heteroplasmy c. Hypervariable region d. None of the above 11. This must be utilized during mtDNA sequencing analysis: a. Negative control b. Sequence both strands c. Positive control d. All of the above 12. This is the most widely used assay for screening mtDNA variation: a. Allele-specific oligonucleotide b. Precipitation-based assays c. Immunodiffusion d. Immunochromotographic 13. In a mtDNA ASO assay, the colorimetric detection is carried out by use of which of the following? a. TMB b. PCR c. Luminol d. Phenolphthalein 14. In PCR amplification of mtDNA, there are usually how many cycles? a. 20-35 b. 34-38 c. 50-100 d. None of the above 15. Which of the following is an example of a DNA sequencing technique? a. Dideoxy-mediated chain termination b. ASO assay c. Chemical degradation d. Both a and c 16. This DNA sequencing technique is also known as the Sanger Method: a. Dideoxy-mediated chain termination b. ASO assay c. Chemical degradation d. Hetroplasmy 17. In DNA sequencing, the product of the chain termination method can be labeled in two ways: Dye-terminator system and: a. Dye-primer system b. Electrophoresis c. d. Cycle sequencing None of the above 18. Which of the following systems for labeling the sequencing product of chain termination is most commonly utilized in forensic laboratories? a. Dye-terminator system b. Electrophoresis c. Cycle sequencing d. All of the above 19. In mtDNA, sequencing of the mtDNA region should be performed _______________. a. Once b. Twice c. Never d. Three times over two days 20. In a reporting format you see “228N.” What does this mean? a. There is an unresolved sequence ambiguity observed at site 228 b. The Mitotype carries an N c. The Mitotype carries an A d. None of the above