1: Franco AT, Friedman DB, Nagy TA, Romero-Gallo J, Krishna U, Kendall A,
Israel
DA, Tegtmeyer N, Washington MK, Peek RM Jr. Delineation of a carcinogenic
Helicobacter pylori proteome. Mol Cell Proteomics. 2009 Aug;8(8):1947-58.
Epub
2009 May 25. PubMed PMID: 19470446; PubMed Central PMCID: PMC2722763.
2: Chetyrkin SV, Mathis ME, Ham AJ, Hachey DL, Hudson BG, Voziyan PA.
Propagation
of protein glycation damage involves modification of tryptophan residues
via
reactive oxygen species: inhibition by pyridoxamine. Free Radic Biol Med.
2008
Apr 1;44(7):1276-85. Epub 2007 Oct 4. PubMed PMID: 18374270.
3: Friedman DB, Lilley KS. Optimizing the difference gel electrophoresis
(DIGE)
technology. Methods Mol Biol. 2008;428:93-124. PubMed PMID: 18287770.
4: Robertson PD, Warren EM, Zhang H, Friedman DB, Lary JW, Cole JL,
Tutter AV,
Walter JC, Fanning E, Eichman BF. Domain architecture and biochemical
characterization of vertebrate Mcm10. J Biol Chem. 2008 Feb
8;283(6):3338-48.
Epub 2007 Dec 6. PubMed PMID: 18065420.
5: Meyrick BO, Friedman DB, Billheimer DD, Cogan JD, Prince MA, Phillips
JA 3rd,
Loyd JE. Proteomics of transformed lymphocytes from a family with
familial
pulmonary arterial hypertension. Am J Respir Crit Care Med. 2008 Jan
1;177(1):99-107. Epub 2007 Oct 11. PubMed PMID: 17932379; PubMed Central
PMCID:
PMC2176118.
6: Pollins AC, Friedman DB, Nanney LB. Proteomic investigation of human
burn
wounds by 2D-difference gel electrophoresis and mass spectrometry. J Surg
Res.
2007 Sep;142(1):143-52. Epub 2007 Jun 29. PubMed PMID: 17604053; PubMed
Central
PMCID: PMC2696121.
7: Tabb DL, Friedman DB, Ham AJ. Verification of automated peptide
identifications from proteomic tandem mass spectra. Nat Protoc.
2006;1(5):2213-22. PubMed PMID: 17406459.
8: Haas KF, Miller SL, Friedman DB, Broadie K. The ubiquitin-proteasome
system
postsynaptically regulates glutamatergic synaptic function. Mol Cell
Neurosci.
2007 May;35(1):64-75. Epub 2007 Feb 8. PubMed PMID: 17363264; PubMed
Central
PMCID: PMC1936977.
9: Viquez OM, Valentine HL, Friedman DB, Olson SJ, Valentine WM.
Peripheral nerve
protein expression and carbonyl content in N,N-diethlydithiocarbamate
myelinopathy. Chem Res Toxicol. 2007 Mar;20(3):370-9. Epub 2007 Feb 27.
PubMed
PMID: 17323979; PubMed Central PMCID: PMC2525616.
10: Khoshnoodi J, Hill S, Tryggvason K, Hudson B, Friedman DB.
Identification of
N-linked glycosylation sites in human nephrin using mass spectrometry. J
Mass
Spectrom. 2007 Mar;42(3):370-9. PubMed PMID: 17212372.
11: Wang SE, Narasanna A, Whitell CW, Wu FY, Friedman DB, Arteaga CL.
Convergence
of p53 and transforming growth factor beta (TGFbeta) signaling on
activating
expression of the tumor suppressor gene maspin in mammary epithelial
cells. J
Biol Chem. 2007 Feb 23;282(8):5661-9. Epub 2007 Jan 4. PubMed PMID:
17204482.
12: Keller JW, Franklin JL, Graves-Deal R, Friedman DB, Whitwell CW,
Coffey RJ.
Oncogenic KRAS provides a uniquely powerful and variable oncogenic
contribution
among RAS family members in the colonic epithelium. J Cell Physiol. 2007
Mar;210(3):740-9. PubMed PMID: 17133351.
13: Anumanthan G, Halder SK, Friedman DB, Datta PK. Oncogenic serinethreonine
kinase receptor-associated protein modulates the function of Ewing
sarcoma
protein through a novel mechanism. Cancer Res. 2006 Nov 15;66(22):1082432.
PubMed PMID: 17108118.
14: Friedman DB, Wang SE, Whitwell CW, Caprioli RM, Arteaga CL.
Multivariable
difference gel electrophoresis and mass spectrometry: a case study on
transforming growth factor-beta and ERBB2 signaling. Mol Cell Proteomics.
2007
Jan;6(1):150-69. Epub 2006 Oct 5. PubMed PMID: 17028091.
15: Wang SE, Shin I, Wu FY, Friedman DB, Arteaga CL. HER2/Neu (ErbB2)
signaling
to Rac1-Pak1 is temporally and spatially modulated by transforming growth
factor
beta. Cancer Res. 2006 Oct 1;66(19):9591-600. PubMed PMID: 17018616.
16: Friedman DB, Stauff DL, Pishchany G, Whitwell CW, Torres VJ, Skaar
EP.
Staphylococcus aureus redirects central metabolism to increase iron
availability.
PLoS Pathog. 2006 Aug;2(8):e87. PubMed PMID: 16933993; PubMed Central
PMCID:
PMC1557832.
17: Busler VJ, Torres VJ, McClain MS, Tirado O, Friedman DB, Cover TL.
Protein-protein interactions among Helicobacter pylori cag proteins. J
Bacteriol.
2006 Jul;188(13):4787-800. PubMed PMID: 16788188; PubMed Central PMCID:
PMC1482994.
18: Hu X, Friedman D, Hill S, Caprioli R, Nicholson W, Powers AC, Hunter
L,
Limbird LE. Proteomic exploration of pancreatic islets in mice null for
the
alpha2A adrenergic receptor. J Mol Endocrinol. 2005 Aug;35(1):73-88.
PubMed PMID:
16087723.
19: Tian C, Breyer RM, Kim HJ, Karra MD, Friedman DB, Karpay A, Sanders
CR.
Solution NMR spectroscopy of the human vasopressin V2 receptor, a G
protein-coupled receptor. J Am Chem Soc. 2005 Jun 8;127(22):8010-1.
Erratum in: J
Am Chem Soc. 2006 Apr 19;128(15):5300. PubMed PMID: 15926814.
20: Zhang YQ, Friedman DB, Wang Z, Woodruff E 3rd, Pan L, O'donnell J,
Broadie K.
Protein expression profiling of the drosophila fragile X mutant brain
reveals
up-regulation of monoamine synthesis. Mol Cell Proteomics. 2005
Mar;4(3):278-90.
Epub 2005 Jan 4. PubMed PMID: 15634690.
21: Daikoku T, Tranguch S, Friedman DB, Das SK, Smith DF, Dey SK.
Proteomic
analysis identifies immunophilin FK506 binding protein 4 (FKBP52) as a
downstream
target of Hoxa10 in the periimplantation mouse uterus. Mol Endocrinol.
2005
Mar;19(3):683-97. Epub 2004 Nov 4. PubMed PMID: 15528267.
22: Chytil A, Waltner-Law M, West R, Friedman D, Aakre M, Barker D, Law
B.
Construction of a cyclin D1-Cdk2 fusion protein to model the biological
functions
of cyclin D1-Cdk2 complexes. J Biol Chem. 2004 Nov 12;279(46):47688-98.
Epub 2004
Sep 7. PubMed PMID: 15355984.
23: Gerbasi VR, Weaver CM, Hill S, Friedman DB, Link AJ. Yeast Asc1p and
mammalian RACK1 are functionally orthologous core 40S ribosomal proteins
that
repress gene expression. Mol Cell Biol. 2004 Sep;24(18):8276-87. PubMed
PMID:
15340087; PubMed Central PMCID: PMC515043.
24: Zhang YQ, Matthies HJ, Mancuso J, Andrews HK, Woodruff E 3rd,
Friedman D,
Broadie K. The Drosophila fragile X-related gene regulates axoneme
differentiation during spermatogenesis. Dev Biol. 2004 Jun 15;270(2):290307.
PubMed PMID: 15183715.
25: Friedman DB, Hill S, Keller JW, Merchant NB, Levy SE, Coffey RJ,
Caprioli RM.
Proteome analysis of human colon cancer by two-dimensional difference gel
electrophoresis and mass spectrometry. Proteomics. 2004 Mar;4(3):793-811.
PubMed
PMID: 14997500.
26: Matsuoka TA, Zhao L,
R.
Members of the large Maf
transcription
in islet beta cells. Mol
12917329; PubMed Central
Artner I, Jarrett HW, Friedman D, Means A, Stein
transcription family regulate insulin gene
Cell Biol. 2003 Sep;23(17):6049-62. PubMed PMID:
PMCID: PMC180917.