The Winogradsky Column: Understanding the Microbiology of a Wetland I. II. III. Question: How do various pollutants affect bacterial and algal colonies in a Winogradsky column? Hypothesis: Materials: Large graduated cylinder Mud or sediment Rain or pond water Paper CaCo3 CaSO4 Iron nail or screw Plastic wrap Rubber band Microscope slides Light source http://www.lyon.edu/webdata/users/dthomas/BIO100H/lab/winogradsky.html IV. V. VI. VII. Methods: a. Shred the paper and place in the bottom of the graduated cylinder b. Mix mud and water in equal amounts to create a slurry. Add one spoonful of each CaCo3 and CaSo4. Add your designated pollutant. Pack into graduated cylinder until 2/3 full. Pack to eliminate air bubbles. Why? c. Add iron nail or screw. d. Top off the column with pond or rain water until ¾ full. Allow space for air! e. Place two microscope slide vertically in your column with a small section exposed from the soil. This will allow bacterial samples to collect that you can remove and observe. f. Cover the column with plastic wrap and secure with a rubber band. g. Place the column in front of a light source. h. Observe the column once a week and record appearance of colored areas. Aerobic mud will be brownish and aerobic mud will be black. Examine the paper for signs of decomposition i. Note if bacteria is growing in aerobic areas and if algae is growing in anaerobic areas. Data Collection: a. In your lab notebook, you should record your observations weekly. A sketch or digital photograph will enhance your observations. Analysis a. At the end of the allotted time, you should write a brief analysis of your column. Examine other groups columns as well. What is happening in your tube? Conclusions KEY TO POTENTIAL OBSERVATIONS Aerobic color Green eukaryal algae or cyanobacteria Red/Brown cyanobacteria or thiobacilli Red/Purple purple non-sulfur bacteria White sulfur oxidizing bacteria Anaerobic color Red/Purple Green Black purple sulfur bacteria green sulfur bacteria sulfate reducers Gas in the water column is probably from O2 from oxygenic photosynthesis Gas in the aerobic zone is probably from CO2 from respiration Gas in the anaerobic zone is probably CH4 from methanogenesis Tracks in the upper layers of the sediment are from by polychaete worms Small specks swimming in the water column are crustaceans KEY EQUATIONS Plant photosynthesis: 6CO2 + 6H2O C6H12O6 + 6O2 Bacterial anaerobic photosynthesis: 6CO2 + 6H2S C6H12O6 + 6S Cellular respiration: C6H12O6 + 6O2 6CO2 + 6H2O Oxidation of Iron: H2S + Fe FeS + H2 MORE INFORMATION ON THE WINOGRADSKY COLUMN Initially oxygen diffused downward from the surface of the water (the air trapped in the top of the tube). The breakdown of the cellulose in paper (carbon) and hydrogen sulfide is achieved via fermentation. The products of these reactions are released and move up the column. Oxygen is very limited at the bottom of the column due to slow diffusion rates. Bacteria that are present at the bottom of the column are mainly responsible for the decomposition of the cellulose found in the shredded paper. The distribution of oxygen and sulfides creates a gradient within the column that will allow different organisms to thrive at different depths. Algae may be present at the top of the column and produce oxygen. In this area, organisms such as protozoans may be found. Because this column represents a closed system (no additional nutrients are added), we can see nutrient cycling. Photosynthesis and respiration are recycling carbon, hydrogen, nitrogen, sulfur, and oxygen. http://www.personal.psu.edu/faculty/j/e/jel5/biofilms/winogradsky.html http://helios.bto.ed.ac.uk/bto/microbes/winograd.htm