Supplementary Data for “Factors Determining Successful Engraftment of Hepatocytes and Susceptibility to Hepatitis B and C Virus Infection in uPA-SCID Mice.” MATERIALS&METHODS Liver tissue specimens, histochemistry and immunohistochemistry Snap frozen or formalin-fixed liver samples from transplanted animals were processed using standard techniques. Quantification of the fraction of liver parenchyma occupied by donor human hepatocytes was performed on H&E-stained slides as described previously (2). Four µm-thick cryostat sections were cut from the frozen liver tissue, fixed in acetone for 10 minutes and incubated with a monoclonal antibody against mouse H2-Kb (BD Pharmingen, dilution 1/50) for 30 min. Subsequently the slides were incubated with peroxidase-labeled rabbit anti-mouse (dilution 1/50) and then peroxidase-labeled swine anti-rabbit immunoglobulin (dilution 1/100) (both from Dako). The red reaction product was developed using amino-ethyl-carbazole and sections were counterstained with hematoxylin. RESULTS. Kinetics of the repopulation of uPA+/+SCID liver by human versus mouse hepatocytes. Using criteria described by Sandgren (1), donor mouse hepatocytes could be distinguished from diseased parenchyma at all examined time points (Table 2). The discriminating characteristics of the healthy donor hepatocytes were their ample eosinophilic and somewhat flocculent cytoplasm, whereas transgene-expressing hepatocytes were small and showed discretely vacuolated cytoplasm (Supplementary Fig 1). Donor mouse hepatocytes were discernable from red foci hepatocytes based on the absence of nuclear pleiomorphism (1). These findings were confirmed by immunohistochemical staining for H2-Kb on frozen tissue, which highlighted the H2-Kb positive donor cells against the background of H2-Kb negative recipient hepatocytes (Supplementary Fig 3). As reported previously, human hepatocytes were easily distinguishable from mouse hepatocytes based on their larger size and pale cytoplasm (2) (Supplementary Fig 4). SUPPLEMENTARY FIGURE LEGENDS. Supplementary Figure 1. Categories of normalized human albumin plasma levels as semi-quantitative measures of human hepatocyte engraftment efficacy in uPA+/+SCID mice. The plasma albumin concentration was normalized for the timepoint in weeks after transplantation at which the plasma sample was obtained (see text). Arbitrary categories of the normalized albumin levels are shown to visually and semi-quantitatively compare engraftment efficacy for each donor cell type. Percentage of animals sampled was used as the dependent variable to correct for the different number of animals transplanted with each type of cells. A. Most sacrificed animals had an absent or marginal human hepatocyte graft take. B. In non-sacrificed animals graft take was minimal after P3 cell transplantations, compared to all other donor cell types. Supplementary Figure 2. Plasma human albumin levels from animals transplanted with cryopreserved hepatocytes from a single donor correlate with blood sampling time point after transplantation. (P2 cell donor, n=130 blood sampled animals, r=0,501, P<0,001). Supplementary Figure 3. Immunohistochemistry for H2-Kb on frozen sections highlights the donor mouse hepatocytes with membraneous positivity against the background of negative diseased liver cells, both at the stages of single cell infiltration (left) and cluster formation (right). The donor cells are larger in comparison with the hepatocytes of the diseased parenchyma of the recipient. The latter also display a more vacuolated cytoplasm (original magnifications x 400). Supplementary Figure 4. Well-delineated clusters of human (left) and donor mouse hepatocytes (right), marked with white arrows, are easily distinguishable from diseased recipient parenchyma by the cell sizes and cytoplasmic features. Healthy donor mouse hepatocytes are characterized by an ample eosinophilic and somewhat flocculent cytoplasm, whereas transgene-expressing hepatocytes are small and show a discretely vacuolated cytoplasm. Donor mouse hepatocytes were discernable from red foci hepatocytes based on the absence of nuclear pleiomorphism, as described by Sandgren (1). Human hepatocytes were easily distinguishable from mouse hepatocytes based on their larger size and pale cytoplasm (2). (Original magnifications x 200 (upper part) and x 400 (lower part)). REFERENCES. 1. Braun KM, Thompson AW, Sandgren EP. Hepatic microenvironment affects oval cell localization in albumin-urokinase-type plasminogen activator transgenic mice. The American journal of pathology 2003 Jan;162(1):195-202. 2. Meuleman P, Libbrecht L, De Vos R, de Hemptinne B, Gevaert K, Vandekerckhove J, et al. Morphological and biochemical characterization of a human liver in a uPA-SCID mouse chimera. Hepatology (Baltimore, Md 2005 Apr;41(4):847-856.