Richard H. Haubrich, M.D. Curriculum Vitae June 05, 2013 Office Antiviral Research Center University of California, San Diego Department of Medicine Division of Infectious Diseases 220 Dickinson Street, Suite A San Diego, CA 92103-8208 Telephone Fax E-Mail (619) 543-8080 (619) 543-5066 rhaubrich@ucsd.edu Education 1975-1979 1979-1983 1983-1984 1984-1986 1986-1987 1987-1990 B.A. in Chemistry, Occidental College; Los Angeles, CA M.D., University of Southern California School of Medicine; Los Angeles, CA Intern, Mercy Hospital and Medical Center; San Diego, CA Resident, Internal Medicine, Mercy Hospital and Medical Center; San Diego, CA Chief Resident, Mercy Hospital and Medical Center; San Diego, CA Fellow, Infectious Diseases, University of Massachusetts Medical Center; Worcester, MA Board Certification 1987 1990 American Board of Internal Medicine American Board of Internal Medicine, Subspecialty Infectious Disease Honors / Awards 1975-1979 1975-1979 1978 1978-1979 1979-1983 1982 1990 California State Scholarship (undergraduate) Occidental College Scholarships (undergraduate) Phi Beta Kappa (undergraduate) ARCS Scholarship (undergraduate) State Graduate Fellowship (medical school) AOA (medical school) Maxwell Finland Young Investigators Award (post graduate) Academic Appointments 1987-1988 Instructor in Medicine; Department of Medicine, University of California, San Diego, CA 1988-1990 Instructor in Medicine; Department of Medicine, University of Massachusetts Medical Center, Worcester, MA 1990-1991 Assistant Professor of Medicine; Department of Medicine, University of Massachusetts Medical Center, Worcester, MA Richard H. Haubrich, M.D. Curriculum Vitae Page 2 1991-1998 Assistant Clinical Professor of Medicine; Department of Medicine, Division of Infectious Diseases, University of California, San Diego, CA 1998-2005 Associate Professor of Medicine; Department of Medicine, Division of Infectious Diseases, University of California, San Diego, CA 2005-present Professor of Medicine; Department of Medicine, Division of Infectious Diseases, University of California, San Diego, CA Current Regional and National Committees / Service 2002-present Co-Director, UCSD Center for AIDS Research Clinical Investigation Core 2003-present Principal Investigator, California Collaborative Treatment Group (CCTG) (a three center collaborative research organization) 2009-present ACTG Antiretroviral Therapy Strategy (ARTS, previously Optimization of Antiretroviral Therapy (OpART)) Research Agenda Committee (Ex-Officia Chair 2012, Chair 2009-11, Vice-Chair 2007-09; Member, 2003-present) 2011- present Member, Hepatitis Transformative Science Group, ACTG Research Interests Since 1991, Dr. Haubrich has been conducting clinical research with the ACTG (AIDS Clinical Trial Group, funded by the National Institutes of Health) and the CCTG (California Collaborative Treatment Group, funded by the California HIV AIDS Research Program). Dr. Haubrich’s research focuses on antiretroviral therapy for treatment-naive and treatmentexperienced patients, HIV drug resistance and trends in HIV therapy and drug resistance. Publications Swerdlow N, Haubrich R. Aggressive treatment of a patient with the acquired immunedeficiency syndrome (Letter). Ann Intern Med 1987;107(4):597. Richard H. Haubrich, M.D. Curriculum Vitae Page 3 1. 2. Haubrich RH, Keroack MA. Pneumococcal crepitant cellulitis caused by a bronchocutaneous fistula. Chest 1992;101(2):566-567. 3. Haubrich RH, Takeda A, Koff W, Smith G, Ennis FA. Studies of antibody-dependent enhancement of human immunodeficiency virus (HIV) type 1 infection mediated by Fc receptors using sera from recipients of a recombinant gp160 experimental HIV-1 vaccine. J Infect Dis 1992;165(3):545-548. 4. Haubrich RH, Bozzette SA. Fluconazole. In: Dollery C, ed. Therapeutic Drugs: Supplement 1. New York, NY: Churchill Livingstone; 1992:S1.90-S1.94. 5. Kahn JO, Lagakos SW, Richman DD, Cross A, Pettinelli C, Liou S-H, Brown M, Volberding PA, Crumpacker CS, Beall G, Sacks HS, Merigan TC, Beltangady M, Smaldone L, Dolin R and the NIAID AIDS Clinical Trials Group (Haubrich RH). A controlled trial comparing continued zidovudine with didanosine in human immunodeficiency virus infection. N Engl J Med 1992;327(9):581-587. 6. Haubrich RH, Haghighat D, Bozzette SA, Tilles J, McCutchan JA, for the California Collaborative Treatment Group. High-dose fluconazole for treatment of cryptococcal disease in patients with human immunodeficiency virus infection. J Infect Dis 1994; 170(1):238-242. 7. Bozzette SA, Finkelstein DM, Spector SA, Frame P, Powderly WG, He W, Phillips L, Craven D, van der Horst C, Feinberg J, for the NIAID AIDS Clinical Trial Group (Haubrich RH). A randomized trial of three antipneumocystis agents in patients with advanced human immunodeficiency virus infection. N Engl J Med 1995;332(11):693-699. 8. Powderly WG, Finkelstein D, Feinberg J, Frame P, He W, van der Horst C, Koletar SL, Eyster E, Carey J, Waskin H, Hooton T, Hyslop N, Spector SA, Bozzette SA, for the NIAID AIDS Clinical Trial Group (Haubrich RH). A randomized trial comparing fluconazole with clotrimazole troches for the prevention of fungal infections in patients with advanced human immunodeficiency virus infection. N Engl J Med 1995;332(11):700705. 9. Haubrich R, McCutchan JA, Holdredge R, Heiner L, Merritt J, Merchant B. An open label, phase I/II clinical trial to evaluate the safety and biological activity of HIV-IT (V) (HIV-1IIIBenv/rev retroviral vector) in HIV-1-infected subjects. Hum Gene Ther 1995; 6(7):941-955. 10. Studies of Ocular Complications of AIDS Research Group in Collaboration with AIDS Clinical Trials Group (Haubrich RH). Antiviral effects of foscarnet and ganciclovir therapy on human immunodeficiency virus p24 antigen in patients with AIDS and cytomegalovirus retinitis. J Infect Dis 1995;172(3):613-621. 11. Haubrich RH, Flexner C, Lederman MM, Hirsch M, Pettinelli CP, Ginsberg R, Lietman P, Hamzeh FM, Spector SA, Richman DD, for the AIDS Clinical Trials Group 213 Team. A randomized trial of the activity and safety of Ro 24-7429 (Tat antagonist) versus nucleoside for human immunodeficiency virus infection. J Infect Dis 1995;172(5):12461252. Richard H. Haubrich, M.D. Curriculum Vitae Page 4 12. Haubrich R, Warner J, Anderson CG, Merritt J, Jacobsen C, McCutchan JA and the California Collaborative Treatment Group. Cytotoxic T lymphocyte augmentation using an HIV-1 env/rev encoding retroviral vector (HIV-IT(V)) as therapy for HIV. Gene Ther 1995;2:599-600. 13. Warner JF, Jolly D, Mento S, Galpin J, Haubrich R, Merritt J. Retroviral vectors for HIV immunotherapy. Ann N Y Acad Sci 1995;772:105-116. 14. Witt MD, Lewis RJ, Larsen RA, Milefchik EN, Leal MA, Haubrich RH, Richie JA, Edwards JE Jr, Ghannoum MA. Identification of patients with acute AIDS-associated cryptococcal meningitis who can be effectively treated with fluconazole: the role of antifungal susceptibility testing. Clin Infect Dis 1996;22(2):322-328. 15. Torriani FJ, Behling CA, McCutchan JA, Haubrich RH, Havlir DV. Disseminated Mycobacterium avium complex: correlation between blood and tissue burden. J Infect Dis 1996;173(4):942-949. 16. Hammer SM, Katzenstein DA, Hughes MD, Gundacker H, Schooley RT, Haubrich RH, Henry WK, Lederman MM, Phair JP, Niu M, Hirsch MS, Merigan TC, for the AIDS Clinical Trials Group Study 175 Study Team. A trial comparing nucleoside monotherapy with combination therapy in HIV-infected adults with CD4 cell counts from 200 to 500 per cubic millimeter. N Engl J Med 1996;335(15):1081-1090. 17. Haubrich R, Warner J, Anderson CG, Peters G, Merritt J, Jacobsen C, McCutchan JA and the California Collaborative Treatment Group. Immunotherapy for HIV-1 using an HIV-1 IIIB env/rev encoding retroviral vector [HIV-IT(V)]. In: Gene Delivery Systems. Published in OECD World Conference Proceedings; 1996:323-334. 18. Haubrich RH, Saag MS. Management of HIV-associated fungal diseases. Improving the Management of HIV Disease (Published by the International AIDS Society—USA) 1997; 4(5):10-14. 19. Fischl MA, Richman DD, Flexner C, Para MF, Haubrich R, Karim A, Yeramian P, Holden-Wiltse J, Meehan PM. Phase I/II study of the toxicity, pharmacokinetics, and activity of the HIV protease inhibitor SC-52151. J Acquir Immune Defic Syndr Hum Retrovirol 1997;15(1):28-34. 20. Haubrich R. Advances in the diagnosis and monitoring of HIV disease. HIV Update: Guidelines and Beyond. Published in Conference Proceedings; 1997:3-9. Richard H. Haubrich, M.D. Curriculum Vitae Page 5 21. Haubrich R, Lalezari J, Follansbee SE, Gill M J, Hirsch M, Richman D, Mildvan D, Burger HU, Beattie D, Donatacci L, Salgo MP, and the NV14256 Study Team. Improved survival and reduced clinical progression in HIV-infected patients with advanced disease treated with saquinavir plus zalcitabine. Antivir Ther 1998;3:33-42. 22. Metzgar D, Field D, Haubrich R, Wills C. Sequence analysis of a compound codingregion microsatellite in Candida albicans resolves homoplasies and provides a highresolution tool for genotyping. Fems Immunol Med Microbiol 1998;20(2):103-109. 23. Havlir DV, Haubrich R, Hwang J, Dunne MW, Currier J, Forthal D, Torriani F, Richman DD, McCutchan JA, for the California Collaborative Treatment Group. Human immunodeficiency virus replication in AIDS patients with Mycobacterium avium complex bacteremia: a case control study. J Infect Dis 1998;177:595-599. 24. El-Sadr WM, Murphy RL, Yurik TM, Luskin-Hawk R, Cheung TW, Balfour Jr. HH, Eng R, Hooton TM, Kerkering TM, Schultz M, van der Horst C, Hafner R, for the Community Program for Clinical Research on AIDS and the AIDS Clinical Trials Group (Haubrich R). Atovaquone compared with dapsone for the prevention of Pneumocystis Carinii pneumonia in patients with HIV infection who cannot tolerate trimethoprim, sulfonamides, or both. N Engl J Med 1998;339(26):1889-1895. 25. Metzgar D, van Belkum A, Field D, Haubrich R, Wills C. Random amplification of polymorphic DNA and microsatellite genotyping of pre- and posttreatment isolates of Candida spp. from human immunodeficiency virus-infected patients on different fluconazole regimens. J Clin Microbiol 1998;36(8):2308-2313. PMC105037 26. Morales AJ, Haubrich RH, Hwang JY, Asakura H, Yen SSC. The effect of six months treatment with a 100 mg daily dose of dehydroepiandrosterone (DHEA) on circulating sex steroids, body composition and muscle strength in age-advanced men and women. Clin Endocrinol (Oxf.) 1998;49(4):421-432. 27. Haubrich R, Richman D. Nevirapine, didanosine, and zidovudine for patients with HIV: the INCAS trial (Letter). JAMA 1999;281(2):130-131. 28. Revicki DA, Swartz C, Wu AW, Haubrich R, Collier AC. Quality of life outcomes of saquinavir, zalcitabine and combination saquinavir plus zalcitabine therapy for adults with advanced HIV infection with CD4 counts between 50 and 300 cells/mm3. Antivir Ther 1999;4:35-44. 29. Haubrich RH, Havlir D. Nelfinavir. In: Dolin R, Masur H, Saag MS, eds. AIDS Therapy. Churchill Livingstone; 1999:177-187. 30. Haubrich RH, Little SJ, Currier JS, Forthal DN, Kemper CA, Beall GN, Johnson D, Dubé MP, Hwang JY, McCutchan JA, and the California Collaborative Treatment Group. The value of patient-reported adherence to antiretroviral therapy in predicting virologic and immunologic response. AIDS 1999;13(9):1099-1107. 31. Forthal DN, Landucci G, Haubrich R, Keenan B, Kuppermann BD, Tilles JG, Kaplan J. Antibody-dependent cellular cytotoxicity independently predicts survival in severely immunocompromised human immunodeficiency virus-infected patients. J Infect Dis 1999; 180:1338-1341. Richard H. Haubrich, M.D. Curriculum Vitae Page 6 32. Haubrich R, Thompson M, Schooley R, Lang W, Stein A, Sereni D, van der Ende ME, Antunes F, Richman D, Pagano G, Kahl L, Fetter A, Brown DJ, Clumeck N, and the Amprenavir PROAB2002 Study Team. A phase II safety and efficacy study of amprenavir in combination with zidovudine and lamivudine in HIV-infected patients with limited antiretroviral experience. AIDS 1999;13(17):2411-2420. 33. Sha BE, Johnson VA, Kendall MA, Haubrich R, Nokta M, Lamb K, Zackin RA, Nail CD, Currier JS. Absence of virological changes after acute febrile illnesses in two patients with undetectable pre-illness plasma HIV-1-RNA levels. AIDS 2000;14(6):746-748. 34. Günthard HF, Wong JD, Spina CA, Ignacio C, Kwok S, Christopherson C, Hwang J, Haubrich R, Havlir D, and Richman DD. Effect of influenza vaccination on viral replication and immune response in persons infected with human immunodeficiency virus receiving potent antiretroviral therapy. J Infect Dis 2000;181:522-531. 35. Gulick RM, Hu XJ, Fisus SA, Fletcher CV, Haubrich R, Cheng H, Acosta E, Lagakos SW, Swanstrom R, Freimuth W, Snyder S, Mills C, Fischl M, Pettinelli C, Katzenstein D, for the AIDS Clinical Trials Group Study 359 Protocol Team. Randomized study of saquinavir with ritonavir or nelfinavir together with delavirdine, adefovir, or both in human immunodeficiency virus-infected adults with virologic failure on indinavir: AIDS Clinical Trials Group Study 359. J Infect Dis 2000;182:1375-1384. 36. Moss NE, Lemp G, Blumenthal R, Goldsmith MA, Haubrich R, Kahn JO. From the cell to the community: AIDS research in California. West J Med 2000;173:119-124. PMC1071020 37. Lederman MM, McKinnis R, Kelleher D, Cutrell A, Mellors J, Neisler M, Cooney E, Haas DW, Haubrich R, Stanford J, Horton J, Landay A, Spreen W. Cellular restoration in HIV infected persons treated with abacavir and a protease inhibitor: age inversely predicts naive CD4 cell count increase. AIDS 2000;14(17):2635-2642. 38. Haubrich RH. Structured treatment interruptions: review of current data. Top HIV Med 2000;8(7):9-13. 39. Fletcher CV, Acosta EP, Cheng H, Haubrich R, Fischl M, Raasch R, Mills C, Hu XJ, Katzenstein D, Remmel RP, Gulick RM, for the ACTG 884 Protocol Team. Competing drug-drug interactions among multidrug antiretroviral regimens used in the treatment of HIV-infected subjects: ACTG 884. AIDS 2000;14(16):2495-2501. 40. Katzenstein DA, Hughes M, Albrecht M, Hammer S, Para M, Murphy R, Valdez H, Haubrich R, Liou S, for the ACTG 302 Study Team. Virologic and CD4+ cell responses to new nucleoside regimens: switching to stavudine or adding lamivudine after prolonged zidovudine treatment of human immunodeficiency virus infection. AIDS Res Hum Retroviruses 2000;16(11):1031-1037. 41. Demeter L, Haubrich R. Phenotypic and genotypic resistance assays: methodology, reliability, and interpretations. J Acquir Immune Defic Syndr 2001;26(Suppl 1):S3-S9. 42. Haubrich R, Demeter L. Clinical utility of resistance testing: retrospective and prospective data supporting use and current recommendations. J Acquir Immune Defic Syndr 2001; 26(Suppl 1):S51-S59. Richard H. Haubrich, M.D. Curriculum Vitae Page 7 43. Kemper CA, Witt MD, Keiser PH, Dubé MP, Forthal DN, Leibowitz M, Smith DS, Rigby A, Hellmann NS, Lie YS, Leedom J, Richman D, McCutchan JA, Haubrich R, and the California Collaborative Treatment Group #575 Team. Sequencing of protease inhibitor therapy: insights from an analysis of HIV phenotypic resistance in patients failing protease inhibitors. AIDS 2001;15(5):609-615. 44. Haubrich RH, Currier JS, Forthal DN, Beall G, Kemper CA, Johnson D, Dubé MP, Hwang J, Leedom JM, Tilles J, McCutchan JA, and the California Collaborative Treatment Group. A randomized study of the utility of human immunodeficiency virus RNA measurement for the management of antiretroviral therapy. Clin Infect Dis 2001;33:10601068. 45. McMahon D, Lederman M, Haas DW, Haubrich R, Stanford J, Cooney E, Horton J, Kelleher D, Ross L, Cutrell A, Lee D, Spreen W, Mellors JW. Antiretroviral activity and safety of abacavir in combination with selected HIV-1 protease inhibitors in therapy-naive HIV-1-infected adults. Antivir Ther 2001;6(2):105-114. 46. Schooley RT, Clumeck N, Haubrich R, Thompson M, Danner SA, van Der Ende ME, Sereni D, Antunes F, Blake D, Myers RE, Tisdale M, Millard J, Mustafa N, Nacci P. A dose-ranging study to evaluate the antiretroviral activity and safety of amprenavir alone and in combination with abacavir in HIV-infected adults with limited antiretroviral experience. Antivir Ther 2001;6(2):89-96. 47. Becker S, Fisher A, Flexner C, Gerber JG, Haubrich R, Kashuba ADM, Luber AD, Piscitelli SC. Pharmacokinetic parameters of protease inhibitors and the Cmin/IC50 ratio: call for consensus (Letter). J Acquir Immune Defic Syndr 2001;27(2):210-211. 48. Eron JJ, Haubrich R, Lang W, Pagano G, Millard J, Wolfram J, Snowden W, Pedneault L, Tisdale M. A phase II trial of dual protease inhibitor therapy: amprenavir in combination with indinavir, nelfinavir, or saquinavir. J Acquir Immune Defic Syndr 2001;26(5):458-461. 49. Sadler BM, Gillotin C, Lou Y, Eron JJ, Lang W, Haubrich R, Stein DS. Pharmacokinetic study of human immunodeficiency virus protease inhibitors used in combination with amprenavir. Antimicrob Agents Chemother 2001;45(12):3663-3668. PMC90895 50. Haubrich R. Improving the utility of phenotype resistance assays: new cut-points and interpretation. Advanced Studies in Medicine 2001;1(12):486-490. 51. Back D, Gatti G, Fletcher C, Garaffo R, Haubrich R, Hoetelmans R, Kurowski M, Luber A, Merry C, Perno C-F. Therapeutic drug monitoring in HIV infection: current status and future directions. AIDS 2002;16(Suppl 1):S5-S37. 52. Swindells S, Evans S, Zackin R, Goldman M, Haubrich R, Filler SG, Balfour Jr. HH, for the AIDS Clinical Trial Group 722 Study Team. Predictive value of HIV-1 viral load on risk for opportunistic infection. J Acquir Immune Defic Syndr 2002;30(2):154-158. 53. Mathews WC, Cole J, Ballard C, Colwell B, Haubrich R, Barber E, Lew T. Early adoption of HIV-1 resistance testing in the San Diego County Ryan White CARE Act Program: predictors and outcomes. AIDS Patient Care STDs 2002;16(7):337-348. Richard H. Haubrich, M.D. Curriculum Vitae Page 8 54. Gulick RM, Hu XJ, Fiscus SA, Fletcher CV, Haubrich R, Cheng H, Acosta E, Lagakos SW, Swanstrom R, Freimuth W, Snyder S, Mills C, Fischl M, Pettinelli C, Katzenstein D, for the AIDS Clinical Trials Group Protocol 359 Team. Durability of response to treatment among antiretroviral-experienced subjects: 48-week results from AIDS Clinical Trials Group Protocol 359. J Infect Dis 2002;186(5):626-633. 55. Haubrich RH, Kemper CA, Hellmann NS, Keiser PH, Witt MD, Forthal DN, Leedom J, Leibowitz M, Whitcomb JM, Richman D, McCutchan JA, and the California Collaborative Treatment Group. The clinical relevance of non-nucleoside reverse transcriptase inhibitor hypersusceptibility: a prospective cohort analysis. AIDS 2002;16(15):F33-40. 56. Kemper CA, Haubrich R, Frank I, Dubin G, Buscarino C, McCutchan JA, Deresinski SC, California Collaborative Treatment Group. Safety and immunogenicity of hepatitis A vaccine in human immunodeficiency virus-infected patients: a double-blind, randomized, placebo-controlled trial. J Infect Dis 2003;187(8):1327-1331. 57. Haubrich RH. International AIDS Society–USA (IAS–USA). Cases on the Web: Current applications of HIV drug resistance testing. April 11, 2003. http://www.iasusa.org/cow. 58. Haubrich RH, Havlir DV. Nelfinavir. In: Dolin R, Masur H, Seag MS, eds. AIDS Therapy. 2nd Ed. Philadelphia: Churchill Livingstone; 2003:212-224. 59. Miller V, Haubrich R, Kuritzkes DR. Understanding treatment-resistant HIV. The PRN Notebook 2003;8(2):12-19. 60. Lalezari JP, DeJesus E, Northfelt DW, Richmond G, Wolfe P, Haubrich R, Henry D, Powderly W, Becker S, Thompson M, Valentine F, Wright D, Carlson M, Riddler S, Haas FF, DeMasi R, Sista PR, Salgo M, Delehanty J. A controlled Phase II trial assessing three doses of enfuvirtide (T-20) in combination with abacavir, amprenavir, ritonavir and efavirenz in non-nucleoside reverse transcriptase inhibitor-naive HIV-infected adults. Antivir Ther 2003;8(4):279-287. 61. Gallant JE, Gerondelis PZ, Wainberg MA, Shulman NS, Haubrich RH, St Clair M, Lanier ER, Hellmann NS, Richman DD. Nucleoside and nucleotide analogue reverse transcriptase inhibitors: a clinical review of antiretroviral resistance. Antivir Ther 2003;8(6):489-506. 62. Shafer RW, Smeaton LM, Robbins GK, De Gruttola V, Snyder SW, D'Aquila RT, Johnson VA, Morse GD, Nokta MA, Martinez AI, Gripshover BM, Kaul P, Haubrich R, Swingle M, McCarty SD, Vella S, Hirsch MS, Merigan TC; for the AIDS Clinical Trials Group 384 Team. Comparison of four-drug regimens and pairs of sequential three-drug regimens as initial therapy for HIV-1 infection. N Engl J Med 2003;349(24):2304-2315. 63. Fletcher CV, Jiang H, Brundage RC, Acosta EP, Haubrich R, Katzenstein D, Gulick RM. Sex-based differences in saquinavir pharmacology and virologic response in AIDS Clinical Trials Group Study 359. J Infect Dis 2004;189(7):1176-1184. 64. Haubrich, RH. Resistance and replication capacity assays: clinical utility and interpretation. Top HIV Med 2004;12(2):52-56. Richard H. Haubrich, M.D. Curriculum Vitae Page 9 65. Swanstrom R, Bosch RJ, Katzenstein D, Cheng H, Jiang H, Hellmann N, Haubrich R, Fiscus SA, Fletcher CV, Acosta EP, Gulick RM, for the AIDS Clinical Trials Group Protocol 359 Team. Weighted phenotypic susceptibility scores are predictive of the HIV-1 RNA response in protease inhibitor-experienced HIV-1-infected subjects. J Infect Dis 2004;190:886-893. 66. Brun-Vézinet F, Costagliola D, Khaled MA, Calvez V, Clavel F, Clotet B, Haubrich R, Kempf D, King M, Kuritzkes D, Lanier R, Miller M, Miller V, Phillips A, Pillay D, Schapiro J, Scott J, Shafer R, Zazzi M, Zolopa A, DeGruttola V. Clinically validated genotype analysis: guiding principles and statistical concerns. Antivir Ther 2004; 9(4):465-478. 67. Yasuda JM, Miller C, Currier JS, Forthal DN, Kemper CA, Beall GN, Tilles JG, Capparelli EV, McCutchan JA, Haubrich RH, and the California Collaborative Treatment Group (CCTG). The correlation between plasma concentrations of protease inhibitors, medication adherence and virological outcome in HIV-infected patients. Antivir Ther 2004;9(5)753761. 68. Haubrich RH, Kemper CA, Hellmann NS, Keiser PH, Witt MD, Tilles JG, Forthal DN, Leedom J, Leibowitz M, McCutchan JA, Richman DD, and the California Collaborative Treatment Group. A randomized, prospective study of phenotype susceptibility testing versus standard of care to manage antiretroviral therapy: CCTG 575. AIDS 2005;19(3):295302. 69. Hawkins T, Geist C, Young B, Giblin A, Mercier RC, Thornton K, Haubrich R. Comparison of neuropsychiatric side effects in an observational cohort of efavirenz- and protease inhibitor-treated patients. HIV Clin Trials 2005;6(4):187-196. 70. Goicoechea M, Haubrich R. CD4 lymphocyte percentage versus absolute CD4 lymphocyte count in predicting HIV disease progression: an old debate revisited. J Infect Dis 2005;192(6):945-947. 71. Fletcher CV, Testa MA, Brundage RC, Chesney MA, Haubrich R, Acosta EP, Martinez A, Jiang H, Gulick RM. Four measures of antiretroviral medication adherence and virologic response in AIDS Clinical Trials Group Study 359. J Acquir Immune Defic Syndr 2005;40(3):301-306. 72. Best B, Haubrich R. Tipranavir: a protease inhibitor for multi-drug resistant HIV-1. Expert Opin Investig Drugs 2006;15(1):59-70. 73. Goicoechea M, Best B, Seefried E, Wagner G, Capparelli E, Haubrich R, and the California Collaborative Treatment Group (CCTG). Failure of modified directly observed therapy combined with therapeutic drug monitoring to enhance antiretroviral adherence in a patient with major depression. AIDS Patient Care STDS 2006;20(4):233-237. 74. Wagner GJ, Kanouse DE, Golinelli D, Miller LG, Daar ES, Witt MD, Diamond C, Tilles JG, Kemper CA, Larsen R, Goicoechea M, Haubrich RH, and the California Collaborative Treatment Group (CCTG). Cognitive-behavioral intervention to enhance adherence to ART: a randomized controlled trial (CCTG 578). AIDS 2006;20(9):12951302. Richard H. Haubrich, M.D. Curriculum Vitae Page 10 75. Goicoechea M, Smith DM, Liu L, May S, Tenorio AR, Ignacio CC, Landay A, Haubrich R. Determinants of CD4+ T-cell recovery during suppressive antiretroviral therapy: association of immune activation, T-cell maturation markers and cellular HIV-1 DNA. J Infect Dis 2006;194(1):29-37. 76. Goicoechea M, Best B, Capparelli E, Haubrich R, for the California Collaborative Treatment Group. Concurrent use of efavirenz and oxcarbazepine may not affect efavirenz plasma concentrations (Letter). Clin Infect Dis 2006;43(1):116-117. 77. Goicoechea M, Best B, Capparelli E, Caperna J, Ballard C, Haubrich R. Therapeutic ritonavir-boosted atazanavir plasma concentration and concurrent omeprazole use. AIDS 2006;20(16):2127-2128. 78. Liu H, Miller LG, Hays RD, Wagner G, Golin CE, Hu W, Kahn K, Haubrich R, Kaplan AH, Wenger NS. A practical method to calibrate self-reported adherence to antiretroviral therapy. J Acquir Immune Defic Syndr 2006;43(Suppl 1):S104-S112. 79. Asfour FR, Haubrich R. Resistance to non-nucleoside reverse transcriptase inhibitors. In: Skowron G, Ogden R, eds. Reverse Transcriptase Inhibitors in HIV/AIDS Therapy. Totowa, N.J.: Humana Press; 2006:401-424. 80. May S, Letendre S, Haubrich R, McCutchan JA, Heaton R, Capparelli E, Ellis R. Meeting practical challenges of a trial involving a multitude of treatment regimens: an example of a multi-center randomized controlled clinical trial in NeuroAIDS. J Neuroimmune Pharmacol 2007;2(1):97-104. 81. Goicoechea M, Vidal A, Capparelli E, Rigby A, Kemper C, Diamond C, Witt MD, Haubrich R, and the California Collaborative Treatment Group. A computer-based system to aid in the interpretation of plasma concentrations of antiretrovirals for therapeutic drug monitoring. Antivir Ther 2007;12(1)55-62. 82. Bhasin S, Parker RA, Sattler F, Haubrich R, Alston B, Umbleja T, Shikuma CM, and the AIDS Clinical Trials Group Protocol A5079 Study Team. Effects of testosterone supplementation on whole body and regional fat mass and distribution in HIV-infected men with abdominal obesity. J Clin Endocrinol Metab 2007;92(3):1049-1057. 83. Haubrich R, Berger D, Chiliade P, Colson A, Conant M, Gallant J, Wilkin T, Nadler J, Pierone G, Saag M, van Baelen B, Lefebvre E and the POWER 2 Study Group. Week 24 efficacy and safety of TMC114/ritonavir in treatment-experienced HIV patients. AIDS 2007;21(6):F11-F18. 84. Clotet B, Bellos N, Molina JM, Cooper D, Goffard JC, Lazzarin A, Wohrmann A, Katlama C, Wilkin T, Haubrich R, Cohen C, Farthing C, Jayaweera D, Markowitz M, Ruane P, Spinosa-Guzman S, Lefebvre E, for the POWER 1 and 2 Study Groups. Efficacy and safety of darunavir-ritonavir at week 48 in treatment-experienced patients with HIV-1 infection in POWER 1 and 2: a pooled subgroup analysis of data from two randomised trials. Lancet 2007;369(9568):1169-1178. 85. Haubrich RH, Jiang H, Swanstrom R, Bates M, Katzenstein D, Petch L, Fletcher CV, Fiscus SA, Gulick RM, for the AIDS Clinical Trials Group Protocol 359 Team. Nonnucleoside phenotypic hypersusceptibility cut-point determination from ACTG 359. HIV Clin Trials 2007;8(2)63-67. Richard H. Haubrich, M.D. Curriculum Vitae Page 11 86. Madruga JV, Cahn P, Grinsztejn B, Haubrich R, Lalezari J, Mills A, Pialoux G, Wilkin T, Peeters M, Vingerhoets J, de Smedt G, Leopold L, Trefiglio R, Woodfall B, on behalf of the DUET-1 study group. Efficacy and safety of TMC125 (etravirine) in treatmentexperienced HIV-1-infected patients in DUET-1: 24-week results from a randomised, double-blind, placebo-controlled trial. Lancet 2007;370(9581):29-38. 87. Haubrich R. Defining HIV susceptibility to new antiretroviral agents–darunavir. J Infect Dis 2007;196(8):1125-1127. 88. Best BM, Goicoechea M, Witt MD, Miller L, Daar ES, Diamond C, Tilles JG, Kemper CA, Larsen R, Holland DT, Sun S, Jain S, Wagner G, Capparelli EV, McCutchan JA, Haubrich RH, and the California Collaborative Treatment Group 578 Study Team. A randomized controlled trial of therapeutic drug monitoring in treatment-naive and experienced HIV-1-infected patients. J Acquir Immune Defic Syndr 2007;46(4):433-442. 89. Goicoechea M, Haubrich R. Nelfinavir (Chapter 15). In: Dolin R, Masur H, Saag MS, eds., AIDS Therapy. 3rd Ed. St. Louis, MO: Elsevier Science; 2008:327-340. 90. Goicoechea M, Liu S, Best B, Sun S, Jain S, Kemper C, Witt M, Diamond C, Haubrich R, Louie S; California Collaborative Treatment Group 578 Team. Greater tenofovir-associated renal function decline with protease inhibitor-based versus nonnucleoside reversetranscriptase inhibitor-based therapy. J Infect Dis 2008;197(1):102-108. 91. Koelsch KK, Liu L, Haubrich R, May S, Havlir D, Günthard HF, Ignacio CC, CamposSoto P, Little SJ, Shafer R, Robbins GK, D’Aquila RT, Kawano Y, Young K, Dao P, Spina CA, Richman DD, Wong JK. Dynamics of total, linear nonintegrated, and integrated HIV-1 DNA in vivo and in vitro. J Infect Dis 2008;197(3):411-419. 92. Haubrich R, Gubernick S, Yasothan U, Kirkpatrick P. Etravirine. Nat Rev Drug Discov 2008;7(4):287-288. 93. Anderson JA, Jiang H, Ding X, Petch L, Journigan T, Fiscus SA, Haubrich R, Katzenstein D, Swanstrom R, Gulick RM and the AIDS Clinical Trials Group Study 359 Protocol Team. Genotypic susceptibility scores and HIV type 1 RNA responses in treatmentexperienced subjects with HIV type 1 infection. AIDS Res Hum Retroviruses 2008; 24(5):685-694. 94. Riddler SA, Haubrich R, DiRienzo AG, Peeples L, Powderly WG, Klingman KL, Garren KW, George T, Rooney JF, Brizz B, Lalloo UG, Murphy RL, Swindells S, Havlir D, Mellors JW and the AIDS Clinical Trials Group Study A5142 Team. Class-sparing regimens for initial treatment of HIV-1 infection. N Engl J Med 2008;358(20):2095-2106. (Drs. Riddler and Haubrich contributed equally to this article). 95. Milefchik E, Leal MA, Haubrich R, Bozzette SA, Tilles JG, Leedom JM, McCutchan JA, Larsen RA. Fluconazole alone or combined with flucytosine for the treatment of AIDSassociated cryptococcal meningitis. Med Mycol 2008;46(4):393-395. 96. Goicoechea M, Liu S, Best B, Sun S, Jain S, Kemper C, Witt M, Diamond C, Haubrich R, Louie S, and the CCTG 578 Team. Reply [to Letter from Crane et al.: Tenofovir-associated decline in renal function]. J Infect Dis 2008;198(6):937-938. Richard H. Haubrich, M.D. Curriculum Vitae Page 12 97. Haubrich R, Soriano V, Lafeuillade A. Statements from the 15th International Symposium on HIV and Emerging Infectious Diseases (ISHEID), Toulon, France, May 28-30, 2008. HIV Clin Trials 2008;9(5):348-365. 98. Kitahata MM, Rodriguez B, Haubrich R, Boswell S, Mathews WC, Lederman MM, Lober WB, Van Rompaey SE, Crane HM, Moore RD, Bertram M, Kahn JO, Saag MS. Cohort profile: the Centers for AIDS Research Network of Integrated Clinical Systems. Int J Epidemiol 2008;37(5):948-955. PMC2597168 99. Eron JJ Jr, Park JG, Haubrich R, Aweeka F, Bastow B, Pakes GE, Yu S, Wu H, Richman DD and the ACTG 5126 Study Team. Predictive value of pharmacokinetics-adjusted phenotypic susceptibility on response to ritonavir-enhanced protease inhibitors (PIs) in human immunodeficiency virus-infected subjects failing prior PI therapy. Antimicrob Agents Chemother 2009; 53(6):2335-2341. PMC2687257 100. Haubrich RH, Riddler SA, DiRienzo AG, Komarow L, Powderly WG, Klingman K, Garren KW, Butcher DL, Rooney JF, Haas DW, Mellors JW, Havlir DV; AIDS Clinical Trials Group (ACTG) A5142 Study Team. Metabolic outcomes in a randomized trial of nucleoside, nonnucleoside and protease inhibitor-sparing regimens for initial HIV treatment. AIDS 2009;23(9):1109-1118. 101. Brumme ZL, John M, Carlson JM, Brumme CJ, Chan D, Brockman MA, Swenson LC, Tao I, Szeto S, Rosato P, Sela J, Kadie CM, Frahm N, Brander C, Haas DW, Riddler SA, Haubrich R, Walker BD, Harrigan PR, Heckerman D, Mallal S. HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins. PLoS One 2009;4(8): e6687. PMC2723923 102. May S, Gamst A, Haubrich R, Benson C, Smith DM. Pooled nucleic acid testing to identify antiretroviral treatment failure during HIV infection. J Acquir Immune Defic Synd 2010;53(2): 194-201. 103. Smith DM, May SJ, Pérez-Santiago J, Strain MC, Ignacio CC, Haubrich RH, Richman DD, Benson CA, Little SJ. The use of pooled viral load testing to identify antiretroviral treatment failure. AIDS 2009;23(16):2151-2158. 104. Katlama C, Haubrich R, Lalezari J, Lazzarin A, Madruga JV, Molina JM, Schechter M, Peeters M, Picchio G, Vingerhoets J, Woodfall B, De Smedt G; and the DUET-1, DUET-2 study groups. Efficacy and safety of etravirine in treatment-experienced, HIV-1 patients: pooled 48 week analysis of two randomized, controlled trials. AIDS 2009;23(17):22892300. 105. Minuto JJ, Haubrich R. Etravirine: a second-generation NNRTI for treatment-experienced adults with resistant HIV-1 infection. Futur HIV Ther 2008;2(6):525-537. 106. Goicoechea M, Jain S, Bi L, Sun S, Smith G, Ha B, Richman D, Louie S, Haubrich R, Treatment Group CC. Interlaboratory Measurement Differences in Intracellular Carbovir Triphosphate Concentrations in HIV-Infected Patients: Sources of Variability in Processing, Shipping, and Quantitation. J Clin Pharmacol 2009; Dec 1. [Epub ahead of print]. Richard H. Haubrich, M.D. Curriculum Vitae Page 13 107. Asmuth DM, Goodrich J, Cooper DA, Haubrich R, Rajicic N, Hirschel B, Mayer H, Valdez H. CD4+ T-cell restoration after 48 weeks in the Maraviroc treatment-experienced Trials MOTIVATE 1 and 2. J Acquir Immune Defic Syndr [Epub ahead of print]. 108. Aldous J, Haubrich R. Defining treatment failure in resource-rich settings. Curr Opin HIV AIDS 2009;4(6):459-466. 109. Goicoechea M, Jain S, Bi L, Kemper C, Daar ES, Diamond C, Ha B, Flaherty J, Sun S, Richman D, Louie S, Haubrich R, and the California Collaborative Treatment Group. Abacavir and tenofovir disoproxil fumarate co-administration results in a nonadditive antiviral effect in HIV-1-infected patients. AIDS 2010;24(5):707-716. 110. John M, Heckerman D, James I, Park LP, Carlson JM, Chopra A, Gaudieri S, Nolan D, Haas DW, Riddler SA, Haubrich R, Mallal S. Adaptive interactions between HLA and HIV-1: highly divergent selection imposed by HLA class I molecules with common supertype motifs. J Immunol 2010;184(8):4368-4377. 111. Best BM, Koopmans PP, Letendre SL, Capparelli EV, Rossi SS, Clifford DB, Collier AC, Gelman BB, Mbeo G, McCutchan JA, Simpson DM, Haubrich R, Ellis R, Grant I; on behalf of the CHARTER Group. Efavirenz concentrations in CSF exceed IC50 for wildtype HIV. J Antimicrob Chemother. 2010 Nov 23. [Epub ahead of print] 112. van Zyl GU, Preiser W, Potschka S, Lundershausen AT, Haubrich R, Smith D. Pooling Strategies to Reduce the Cost of HIV-1 RNA Load Monitoring in a Resource-Limited Setting. Clin Infect Dis. 2011 Jan;52(2):264-70. PubMed PMID: 21288854. 113. International HIV Controllers Study, Pereyra F, ...Haubrich R, …, Zhao M. The major genetic determinants of HIV-1 control affect HLA class I peptide presentation. Science. 2010 Dec 10;330(6010):1551-7. Epub 2010 Nov 4. PubMed PMID: 21051598. 114. Katlama C, Clotet B, Mills A, Trottier B, Molina JM, Grinsztejn B, Towner W, Haubrich R, Nijs S, Vingerhoets J, Woodfall B, Witek J. Efficacy and safety of etravirine at week 96 in treatment-experienced HIV type-1-infected patients in the DUET-1 and DUET-2 trials. Antivir Ther. 2010;15(7):1045-52. PubMed PMID: 21041921. 115. Hulgan T, Haubrich R, Riddler SA, Tebas P, Ritchie MD, McComsey GA, Haas DW, Canter JA. European mitochondrial DNA haplogroups and metabolic changes during antiretroviral therapy in AIDS Clinical Trials Group Study A5142. AIDS. 2011 Jan 2;25(1):37-47. PubMed PMID: 20871389; PubMed Central PMCID: PMC2995830. 116. Brehm JH, Lalama CM, Hughes MD, Haubrich R, Riddler SA, Sluis-Cremer N, Mellors JW; for the AIDS Clinical Trials Group Study A5142 Protocol Team. Failure of Initial Therapy With Two Nucleosides and Efavirenz Is Not Associated With Early Emergence of Mutations in the C-Terminus of HIV-1 Reverse Transcriptase. J Acquir Immune Defic Syndr. 2011 Apr;56(4):344-348. PubMed PMID: 21350368. 117. Grady BJ, Torstenson ES, McLaren PJ, DE Bakker PI, Haas DW, Robbins GK, Gulick RM, Haubrich R, Ribaudo H, Ritchie MD. Use of biological knowledge to inform the analysis of gene-gene interactions involved in modulating virologic failure with efavirenz-containing treatment regimens in art-naïve actg clinical trials participants. Pac Symp Biocomput. 2011:253-64. PubMed PMID: 21121053. Richard H. Haubrich, M.D. Curriculum Vitae Page 14 118. Simpson KN, Dietz B, Baran RW, Garren KW, Riddler SA, Bhor M, Haubrich RH. Economic modeling of the combined effects of HIV-disease, cholesterol and lipoatrophy based on ACTG 5142 trial data. Cost Eff Resour Alloc. 2011 May 8;9:5. PubMed PMID: 21548986; PubMed Central PMCID: PMC3117802. 119. Yamamoto T, Price DA, Casazza JP, Ferrari G, Nason M, Chattopadhyay PK, Roederer M, Gostick E, Katsikis PD, Douek DC, Haubrich R, Petrovas C, Koup RA. Surface expression patterns of negative regulatory molecules identify determinants of virusspecific CD8+ T-cell exhaustion in HIV infection. Blood. 2011 May 5;117(18):4805-15. Epub 2011 Mar 11. PubMed PMID: 21398582; PubMed Central PMCID: PMC3100691. 120. Poon AF, Aldous JL, Mathews WC, Kitahata M, Kahn JS, Saag MS, Rodríguez B, Boswell SL, Frost SD, Haubrich RH. Transmitted drug resistance in the CFAR network of integrated clinical systems cohort: prevalence and effects on pre-therapy CD4 and viral load. PLoS One. 2011;6(6):e21189. Epub 2011 Jun 20. PubMed PMID: 21701595; PubMed Central PMCID: PMC3118815. 121. Taiwo B, Gallien S, Aga E, Ribaudo H, Haubrich R, Kuritzkes DR, Eron JJ Jr. Antiretroviral Drug Resistance in HIV-1-Infected Patients Experiencing Persistent LowLevel Viremia During First-Line Therapy. J Infect Dis. 2011 Aug;204(4):515-20. PubMed PMID: 21791652. 122. Almeida CA, Bronke C, Roberts SG, McKinnon E, Keane NM, Chopra A, Kadie C, Carlson J, Haas DW, Riddler SA, Haubrich R, Heckerman D, Mallal S, John M. Translation of HLA-HIV Associations to the Cellular Level: HIV Adapts To Inflate CD8 T Cell Responses against Nef and HLA-Adapted Variant Epitopes. J Immunol. 2011 Sep 1;187(5):2502-13. Epub 2011 Aug 5. PubMed PMID: 21821798. 123. Mugavero MJ, May M, Ribaudo HJ, Gulick RM, Riddler SA, Haubrich R, Napravnik S, Abgrall S, Phillips A, Harris R, Gill MJ, de Wolf F, Hogg R, Günthard HF, Chêne G, Dʼarminio Monforte A, Guest JL, Smith C, Murillas J, Berenguer J, Wyen C, Domingo P, Kitahata MM, Sterne JA, Saag MS; on behalf of the AIDS Clinical Trial Group DACS 241 team AIDS Clinical Trial Group Study 5095 team AIDS Clinical Trial Group Study 5142 team and the Antiretroviral Cohort Collaboration. Comparative Effectiveness of Initial Antiretroviral Therapy Regimens: ACTG 5095 and 5142 Clinical Trials Relative to ART-CC Cohort Study. J Acquir Immune Defic Syndr. 2011 Aug 18. [Epub ahead of print] PubMed PMID: 21857357. 124. Haubrich RH, Riddler SA, Ribaudo H, Dirienzo AG, Klingman KL, Garren KW, Butcher DL, Rooney JF, Havlir DV, Mellors JW; for the AIDS Clinical Trials Group (ACTG) A5160 and A5142 Study Teams. Initial Viral Decay to Assess the Relative Antiretroviral Potency of PI-, NNRTI- and NRTI-Sparing Regimens for First Line Therapy of HIV Infection. AIDS. 2011 Sep 21. [Epub ahead of print] PubMed PMID: 21941167. Richard H. Haubrich, M.D. Curriculum Vitae Page 15 125. Haas DW, Kuritzkes DR, Ritchie MD, Amur S, Gage BF, Maartens G, Masys D, Fellay J, Phillips E, Ribaudo HJ, Freedberg KA, Petropoulos C, Manolio TA, Gulick RM, Haubrich R, Kim P, Dehlinger M, Abebe R, Telenti A; Workshop Pharmacogenomics-A Path Towards Personalized HIV Care. Pharmacogenomics of HIV therapy: summary of a workshop sponsored by the National Institute of Allergy and Infectious Diseases. HIV Clin Trials. 2011 Sep-Oct;12(5):277-85. PubMed PMID: 22180526. 126. Aldous JL, Pond SK, Poon A, Jain S, Qin H, Kahn JS, Kitahata M, Rodriguez B, Dennis AM, Boswell SL, Haubrich R, Smith DM. Characterizing HIV Transmission Networks Across the United States. Clin Infect Dis. 2012 Oct;55(8):1135-43. Epub 2012 Jul 10. PubMed PMID: 22784872. 127. Krishnan S, Schouten JT, Atkinson B, Brown T, Wohl D, McComsey GA, Glesby MJ, Shikuma C, Haubrich R, Tebas P, Campbell TB, Jacobson DL. Metabolic Syndrome Before and After Initiation of Antiretroviral Therapy in Treatment-Naïve HIV-Infected Individuals. J Acquir Immune Defic Syndr. 2012 Nov 1;61(3):381-389. PubMed PMID: 22828718; PubMed Central PMCID: PMC3480980. 128. Carlson JM, Brumme CJ, Martin E, Listgarten J, Brockman MA, Le AQ, Chui C, Cotton LA, Knapp DJ, Riddler SA, Haubrich R, Nelson G, Pfeifer N, Deziel CE, Heckerman D, Apps R, Carrington M, Mallal S, Harrigan PR, John M, Brumme ZL; the International HIV Adaptation Collaborative. Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1. J Virol. 2012 Oct 10. [Epub ahead of print] PubMed PMID: 23055555. 129. Innes S, Schulte-Kemna E, Cotton MF, Zöllner EW, Haubrich R, Klinker H, Sun X, Jain S, Edson C, van Niekerk M, Innes ER, Rabie H, Browne SH. Biceps Skin-Fold Thickness May Detect and Predict Early Lipoatrophy in HIV-Infected Children. Pediatr Infect Dis J. 2012 Dec 17. [Epub ahead of print] PubMed PMID: 23249919. 130. Innes S, Cotton MF, Haubrich R, Conradie MM, van Niekerk M, Edson C, Rabie H, Jain S, Sun X, Zöllner EW, Hough S, Browne SH. High prevalence of lipoatrophy in prepubertal South African children on antiretroviral therapy: a cross-sectional study. BMC Pediatr. 2012 Nov 23;12:183. doi: 10.1186/1471-2431-12-183. PubMed PMID: 23176441; PubMed Central PMCID: PMC3584923. 131. Carlson JM, Brumme CJ, Martin E, Listgarten J, Brockman MA, Le AQ, Chui CK, Cotton LA, Knapp DJ, Riddler SA, Haubrich R, Nelson G, Pfeifer N, Deziel CE, Heckerman D, Apps R, Carrington M, Mallal S, Harrigan PR, John M, Brumme ZL; International HIV Adaptation Collaborative. Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1. J Virol. 2012 Dec;86(24):13202-16. doi: 10.1128/JVI.01998-12. Epub 2012 Oct 10. PubMed PMID: 23055555; PubMed Central PMCID: PMC3503140. 132. Gianella S, Smith DM, Vargas MV, Little SJ, Richman DD, Daar ES, Dube MP, Zhang F, Ginocchio CC, Haubrich RH, Morris SR; the CCTG 592 Team. Shedding of HIV and Human Herpesviruses in the Semen of Effectively Treated HIV-1-Infected Men Who Have Sex With Men. Clin Infect Dis. 2013 May 22. [Epub ahead of print] PubMed PMID: 23595831. Richard H. Haubrich, M.D. Curriculum Vitae Page 16 Published Abstracts 1. Haubrich RH, McCutchan JA, Caralli V, Spector SA, Jacobsen C, Kang C, Merritt J. Safety and immunogenicity of a monoclonal anti-idiotype antibody (3C9) plus SAF-m adjuvant for HIV-infected patients. J Cell Biochem 1993; Keystone Symposia, Suppl 17E:79. 2. Haubrich R, Burger HU, Beattie D, Donatacci L, Salgo MP, and the NV14256 Study Team. Saquinavir plus zalcitabine vs saquinavir or zalcitabine monotherapy in HIVinfected patients discontinuing or intolerant to zidovudine: results of a randomized, double blind trial. AIDS 1996;10(Suppl 1,2):S17. 3. Haubrich R, Kemper C, Witt M, Keiser P, Dubé M, Forthal D, Currier J, Seefried E, Rigby A, Richman D, Hellmann N, Heilek G, Lie Y, McCutchan JA, and the CCTG. Differences in protease inhibitor (PI) phenotypic susceptibility after failure of the first PIcontaining regimen. Antivir Ther 2000;4(Suppl 1):55. Abstract 80. 4. Haubrich R, Whitcomb J, Keiser P, Kemper C, Witt M, Dubé M, Forthal D, Leibowitz M, Hwang J, Rigby A, Hellmann N, McCutchan JA, Richman D, and the CCTG. Nonnucleoside reverse transcriptase inhibitor viral hypersensitivity is common and improves short-term virological response. Antivir Ther 2000;5(Suppl 3):69. Abstract 87. 5. Haubrich R, Keiser P, Kemper C, Witt M, Leedom J, Forthal D, Leibowitz M, Hwang J, Seefried E, McCutchan JA, Hellmann N, Richman D, and the CCTG Study Team. CCTG 575: a randomized, prospective study of phenotype testing versus standard of care for patients failing antiretroviral therapy. Antivir Ther 2001;6(Suppl 1):63. Abstract 80. 6. Hellmann NS, Wrin T, Bates M, Grant R, Hicks C, Haubrich R, Petropoulos CJ. Modelling the effect of HIV replication capacity on treatment outcomes. Antivir Ther 2002; 7(Suppl 1):S70. Abstract 63. 7. Haubrich R, Wrin T, Hellmann N, McCutchan JA, Keiser P, Kemper C, Witt M, Leedom J, Forthal D, Richman D, and the CCTG. Replication capacity as a predictor of immunological and virological benefit despite virological failure of an antiretroviral regimen. Antivir Ther 2002;7(Suppl 1):S133. Abstract 121. 8. Becker MI, Haubrich R, Wesselman CW, Garrett L, Lee SY, Millard D, Baxter JD. HIV-1 genotypic resistance in treatment-naive subjects enrolled in an observational trial (GAIN). Antivir Ther 2002;7(Suppl 1):S175. Abstract 161. 9. Miller L, McCutchan JA, Keiser P, Kemper C, Witt M, Leedom J, Forthal D, Hellmann N, Richman D, Seefried E, Rigby A, Haubrich R, and the California Collaborative Treatment Group. Accumulation of antiretroviral resistance in treatment-experienced patients: the impact of medication adherence. Antivir Ther 2003;8(Suppl 1):S167. Abstract 151. 10. Haubrich R, Hernandez J, Bates M, Thompson M, Margolis D, Pappa K, Yau L, Schooley R. Determinants of replication capacity (RC) in HIV-1 isolates from antiretroviral (ART)experienced adults failing a PI-based regimen, and relationship of RC with HIV-1 RNA and CD4 counts. Antivir Ther 2004;9(4):S162. Abstract 146. Richard H. Haubrich, M.D. Curriculum Vitae Page 17 11. Haubrich RH, Riddler SA, DiRienzo AG, Peeples L, Klingman KL, Garren KW, George T, Rooney JF, Brizz B, Havlir D, Mellors JW, and the AIDS Clinical Trials Group 5142 Study Team. Drug resistance at virological failure in a randomized, Phase III trial of NRTI-, PI- and NNRTI-sparing regimens for initial treatment of HIV-1 infection (ACTG 5142). Antivir Ther 2007;12(Suppl 1):S66. Abstract 57. 12. Jain S, Mathews C, Saag M, Kitahata M, Rodriguez B, Kahn J, Boswell S, Lober WB, Lederman M, Sun S, Frost S, Haubrich RH, and the CNICS Study Team. Increasing prevalence of triple-class-experienced patients at six US sites: data from the CNICS (CFAR Network of Integrated Clinical Systems) cohort. Antivir Ther 2007;12(Suppl 1):S71. Abstract 62. 13. Frost SDW, Mathews C, Saag M, Kitahata M, Rodriguez B, Kahn J, Boswell S, Lober WB, Lederman M, Sun S, Poon AFY, Jain S, Haubrich RH, and the CNICS Study Team. Representing complex regimen data in the CNICS (CFAR Network of Integrated Clinical Systems) cohort. Antivir Ther 2007;12(Suppl 1):S168. Abstract 153. 14. Brehm J, Sheen CW, Hughes M, Lalama C, Haubrich R, Riddler S, Sluis-Cremer N and Mellors J. Virologic failure of regimens containing two NRTIs plus efavirenz is not associated with the selection of mutations in the connection or RNase H domains of reverse transcriptase. Antivir Ther 2009; 14 (Suppl 1): A34. Abstract 32. 15. Aldous JL, Jain S, Sun S, Mathews C, Kitahata M, Kahn J, Saag M, Rodriguez B, Boswell S, Frost SD, Haubrich RH and the CNICS 002 Study Team. Increasing prevalence of triple-class antiretroviral experienced patients is not associated with virologic failure: data from the CFAR network of integrated clinical systems (CNICS) cohort. Antivir Ther 2009; 14 (Suppl 1): A84. Abstract 73. Recent Presented Abstracts 1. Aldous J, Jain S, Sun S, Mathews C, Kitahata M, Kahn J, Saag M, Rodriquez B, Boswell S, Haubrich R, and the CNICS 002 Study Group. Decreasing Prevalence of Drug Resistance Mutations over a 7 Year Period in the CFAR Network of Integrated Clinical Systems. 17th Conference on Retroviruses and Opportunistic Infections; February 16-19, 2010; San Francisco, CA. Abstract 585. 2. Poon A, Aldous J, Mathews C, Kitahata M, Kahn J, Saag M, Rodriquez B, Boswell S, Frost S, Haubrich R, and the CNICS 002 Study Group. Association with Transmission of M184V/I and a Reduced Viral Load in Therapy-Naïve Patients in the CFAR Network of Integrated Clinical Systems (CNICS) Cohort 17th Conference on Retroviruses and Opportunistic Infections; February 16-19, 2010; San Francisco, CA. Abstract 583 3. Goicoechea M, Rieg G, Dube M, Kerkar S, Schneider S, Kemper C, Diamond C, Jain S, Sun S, Hermes A, Daar E, Haubrich R, California Collaborative Treatment Group. Faster early viral decline with raltegravir (RAL) + lopinavir/ritonavir (LPV/r) vs. efavirenz (EFV)/ tenofovir disoproxil fumarate (TDF)/ emtricitabine (FTC) in antiretroviral-naive patients: CCTG 589. XVIII International AIDS Conference; July 18- 23, 2010; Vienna, Austria. Abstract THPE0068. Richard H. Haubrich, M.D. Curriculum Vitae Page 18 4. Rodriguez B, Lanzkron S, Haywood C, Kitahata M, Eron J, Moore R, Kahn J, Haubrich R, Matthews W, Kalayjian R, Saag M, Lederman M. Sickle cell disease is associated with a decreased probability of HIV infection among black patients in the United States. XVIII International AIDS Conference; July 18- 23, 2010; Vienna, Austria. Abstract TUPE0072. 5. Potschka S, Lundershausen A, Haubrich R, Smith D, Preiser W, van Zy G. Use of clinical criteria with HIV RNA viral load pooling reduces the cost of monitoring antiretroviral therapy (ART) in low- to middle- income countries. XVIII International AIDS Conference; July 18- 23, 2010; Vienna, Austria. Abstract TUPE0109. 6. Huang J, Hughes M, Riddler S, Haubrich R, AIDS Clinical Trials Group 5142 Study Team. Effects of randomized regimen and nucleoside reverse transcriptase inhibitor (NRTI) selection on 96 week bone mineral density (BMD): results from ACTG 5142. XVIII International AIDS Conference; July 18- 23, 2010; Vienna, Austria. Abstract WEAB0304. 7. Goicoechea M, Zheng Y, Hughes M, Riddler S, Neely M, Haas D, Louie S, Haubrich R. Antiretroviral regimen and pharmacogenetic determinants of tenofovir-associated change in creatinine clearance in ACTG protocol A5142. XVIII International AIDS Conference; July 18- 23, 2010; Vienna, Austria. Abstract WEAB0305. 8. Miller L, Minuto J, Jain S, Mai T, Diamond C, Larsen R, Kemper C, Sun S, Diep D, Haubrich R and California Cooperative Treatment Group (CCTG) 587 Investigators. A Multi-Center Prospective Investigation of Risk Factors for Community-Associated Methicillin Resistant Staphylococcus aureus (CA-MRSA) Infection in HIV-Infected Persons. 18th Conference on Retroviruses and Opportunistic Infections, Boston, February 27-March 2, 2011. Abstract 900. 9. Ribaudo H, Smith K, Robbins G, Flexner C, Haubrich R, Chen Y, Fischl M, Riddler S and Gulick R. Race Differences in the Efficacy of Initial ART on HIV Infection in Randomized Trials Undertaken by ACTG. 18th Conference on Retroviruses and Opportunistic Infections, Boston, February 27-March 2, 2011. Abstract 50. 10. Aldous J, Poon A, Kosakovsky Pond S, Jain S, Qin H, Kahn J, Kitahata M, Rodriguez B, Haubrich R, and Smith D. 18th Identifying HIV Transmission Networks in the CNICS: Implications for the Study of Transmission in Women and Minorities in a Large Clinical Cohort. 18th Conference on Retroviruses and Opportunistic Infections, Boston, February 27-March 2, 2011. Abstract 1045. 11. McLaren P, Ribaudo H, Daar E, Robbins G, Haubrich R, Acosta E, Morse G, de Bakker P, Haas D, and ACTG. Whole Genome Association Study of Viral Failure with EFV- and/or ABC-containing Regimens in ACTG Studies. 18th Conference on Retroviruses and Opportunistic Infections, Boston, February 27-March 2, 2011. Abstract 477. 12. Bowman V, Rieg G, Jain S, Goicoechea M, Dube M, Kerkar S, Schneider S, Kemper C, Diamond C, Sun S, Hermes A, Bailey K, Daar E, Haubrich R, California Collaborative Treatment Group. 48 week results of a pilot randomized study of an nucleoside reverse transcriptase inhibitor (NRTI)-sparing regimen of raltegravir (RAL) + lopinavir/ritonavir (LPV/r) versus efavirenz/tenofovir disoproxil fumarate /emtricitabine (EFV/TDF/FTC) in antiretroviral naïve subjects. 6th IAS Conference on HIV Pathogenesis, Treatment and Prevention, Rome, Italy, July 17-20, 2011. Abstract CDB336. Richard H. Haubrich, M.D. Curriculum Vitae Page 19 13. Innes S, van Niekerk M, Rabie H, Cotton M, Haubrich R, Browne S. Prevalence and risk factors for lipoatrophy among pre-pubertal African children on HAART. 6th IAS Conference on HIV Pathogenesis, Treatment and Prevention, Rome, Italy, July 17-20, 2011. Abstract CDB430. 14. Innes S, Cotton M, Haubrich R, Eagar R, Edson C, Jain S, Sun X, Zoellner E, and Browne S. High Prevalence of Objectively Verified Clinical Lipoatrophy in Pre-pubertal Children Is Associated with Stavudine—the Clock Is Ticking: Sub-Saharan Africa. 19th Conference on Retroviruses and Opportunistic Infections, Seattle, March 5-8, 2012. Abstract 972. 15. Achenbach C, Cole S, Kahn J, Mugavero M, Crane H, Eron J, Moore R, Haubrich R, Saag M, and Kitahata. Incidence and Predictors of NHL among HIV+ Patients on Suppressive ART. 19th Conference on Retroviruses and Opportunistic Infections, Seattle, March 5-8, 2012. Abstract 131. 16. Larsen R, Sanchez A, Haubrich R, and Daar E. A Phase I Safety Study of Angiotensin 1-7 (TXA127) in Persons with HIV Viral Control but Poor Immune Reconstitution. 19th Conference on Retroviruses and Opportunistic Infections, Seattle, March 5-8, 2012. Abstract 602. 17. Zheng L, Mellors J, Gulick R, Riddler S, Haubrich R, and Hughes M. Neither Pretreatment CD4+ Cell Count nor HIV-1 RNA Is Associated with Emergence of Drug Resistance at Virologic Failure on Efavirenz + NRTI: Randomized ACTG Studies. 19th Conference on Retroviruses and Opportunistic Infections, Seattle, March 5-8, 2012. Abstract 705. 18. Tashima K, Mollan K, Na L, Gandhi R, Klingman K, Fichtenbaum C, Andrade A, Johnson V, Eron J, Haubrich R. Baseline characteristics and acceptance of regimens recommended by an expert panel in ACTG A5241 OPTIONS, a randomized salvage HIV therapy trial. 20th Conference on Retroviruses and Opportunistic Infections, Atlanta, March 3-6, 2013. Abstract 557. 19. Tashima ., Smeaton L, Andrade A, Eron J, Fichtenbaum C. Gandhi R, Johnson V, Klingman K, Hollabaugh K, Haubrich R. Omitting NRTIs from ARV regimens is not inferior to adding NRTIs in treatment experienced HIV+ subjects failing a PI regimen: the ACTG OPTIONS study. 20th Conference on Retroviruses and Opportunistic Infections, Atlanta, March 3-6, 2013. Abstract 153LB (late breaker Oral presentation). 20. McKinnon J, Lalama C, Riddler S, Haubrich R, Hughes M, Vagratian D, Mellors J. Residual viremia detected by single copy plasma HIV-RNA assay as an early predictor of virologic failure. 20th Conference on Retroviruses and Opportunistic Infections, Atlanta, March 3-6, 2013. Abstract 603. 21. Grant P, Kitch D, McComsey G, Dube M, Haubrich R, Huang J, Riddler S, Tebas P, Zolopa A, Brown T. Lower baseline CD4 is associated with greater loss of bone mineral density (BMD) after antiretroviral therapy (ART) initiation. 20th Conference on Retroviruses and Opportunistic Infections, Atlanta, March 3-6, 2013. Abstract 823. Richard H. Haubrich, M.D. Curriculum Vitae Page 20 22. Ellis R, Vaida F, Letendre S, Haubrich R, Heaton R, McCutchan A, Cherner M, Umlauf A, Sacktor N, Clifford D. A Randomized Controlled Trial of a Central Nervous Systemtargeted Strategy for HIV-associated Neurocognitive Disorders. 20th Conference on Retroviruses and Opportunistic Infections, Atlanta, March 3-6, 2013. Abstract 20. 23. Haubrich R, Jain S, Perez-Heydrich, C, Hurt P, Morris S, Sun S, Napravnik S, Crane H, Emch M, Eron J. Geospatial and Individual Factors are Associated with High-risk Transmission Behavior among HIV+ Subjects in Care: Data from CNICS. 20th Conference on Retroviruses and Opportunistic Infections, Atlanta, March 3-6, 2013. Abstract 1076. 24. Weibel S, Smith D, Vargas M, Little, Richman D, Daar E, Dube M, Ginocchio C, Haubrich R, Morris S. Shedding of HIV and Human Herpesviruses in the Semen of Effectively Treated HIV+ Men. 20th Conference on Retroviruses and Opportunistic Infections, Atlanta, March 3-6, 2013. Abstract 1079.