Cats and You: DNA Doubles? Background: Students will discover the history of the mapping of the human genome and the feline genome and will compare the number of chromosomes and the DNA for each. Goal: Students will discover that feline DNA has many similarities to human DNA. Objectives: Students will Compare and contrast human and cat characteristics Read articles explaining the history of the human and feline genome mapping and view charts comparing chromosomes numbers. Answer questions based on initial understanding and persuasive comprehension Materials (for a class of 30): Large Venn diagram (on white board or easel paper) Markers 15 Copies of Chromosome Numbers Student Sheet 15 Copies of Chromosome Numbers Chart Overhead transparency of Human and Cat Chromosome Comparison 15 Copies of Human and Feline Genome Decoding Packet 15 Copies of Cats and You data table and question Optional- Internet Access to view Human Chromosome Map and Chromosome Comparison http://www.ornl.gov/sci/techresources/Human_Genome/posters/chromosome/chooser.shtml http://www.sciencemag.org/feature/data/genome99/text/cat.dtl Time Required: 45 – 60 minute class period Standards Met: Life Science Standards: Structure & function in living systems Life Science Standards: Diversity & adaptations of organisms Science and Technology Standards: Understanding about science & technology Procedure: Begin by telling the students that you saw a cute cat mentioned in the classifieds and you thought that it was a great tie in to yesterday’s lesson. Read them the ad. Tell them that you called the number and that you received information about the cat, Sparky and the shelter said they would fax it to you by tomorrow. Copyright © 2009 Pfizer Inc. All rights reserved. 2.1 Pondering Sparky got you to wondering what the genetic similarities might be between humans and cats. Initiation: Ask the class if any students have cats as pets. Have them share stories about these feline pets. Discuss if cats make good pets. (34% of the American population has a pet cat) Ask the class to compare humans and cats. What are their similarities and differences? As a class, create a Venn diagram comparing human and cat characteristics. (if preferred, each student or student group could do this on their own and then one large diagram could be created from their ideas) Pass out the Chromosome Number Student Sheet and give students time to answer questions Give students Chromosome Number Chart. Have them complete and discuss their answers to questions #6 and 7. Put transparency of Cat and Human Chromosome Comparisons on overhead. Have students compare their answers to questions 1 and 2 to actuals. DAY 2 Pass out the History of Human and Cat Genome mapping sheets. Each student reads the Genome information and fills in their data table and answers a persuasive question. Collect the papers to correct later (use rubric to score persuasive question) Review the answers with the class. If time permits, conduct a class debate involving the final question. *If you have access to computers, simply have student complete the research on-line, instead of making copies! http://www.sciencemag.org/feature/data/genome99/text/cat.dtl (to see genome map of cat and human) http://www.ornl.gov/sci/techresources/Human_Genome/posters/chromosome/choose r.shtml (to see human genome) Assessment: Participation in class discussion and completion of Venn diagram Completion of Chromosome Number Student Sheet Completion of Genome data table Scoring of persuasive question Copyright © 2009 Pfizer Inc. All rights reserved. 2.2 Cats and You: DNA Doubles? Chromosome Numbers Student Sheet Directions: Work with a partner to hypothesize answers to the following questions: 1. How many chromosomes do humans have? _____________________ 2. How many chromosomes do cats have? ______________________ 3. How many chromosomes do algae have? _____________________ 4. How many chromosomes do elephants have? __________________ 5. Describe the relationship between the number of chromosomes an organism has and its: Size _____________________________________________________________ Intelligence _______________________________________________________ Lifespan _________________________________________________________ 6. Looking at the Chromosome Numbers Chart, what surprises you about the numbers? Do you notice any patterns about the various species? 7. Evaluate if you need to change your answers to questions #1-2. Give a 2 sentence rationale explaining why you changed or kept your answers. Copyright © 2009 Pfizer Inc. All rights reserved. 2.3 Cats and You: DNA Doubles? Chromosome Numbers Teacher Key Directions: Work with a partner to hypothesize answers to the following questions: 1. How many chromosomes do humans have? 46 2. How many chromosomes do cats have? 38 3. How many chromosomes do algae have? 148 4. How many chromosomes do elephants have? 56 5. Describe the relationship between the number of chromosomes an organism has and its: (there is no relationship for the following factors) Size _____________________________________________________________ Intelligence _______________________________________________________ Lifespan _________________________________________________________ 6. Looking at the Chromosome Numbers Chart, what surprises you about the numbers? Do you notice any patterns about the various species? Answers will vary, but could include: A shrimp has 254 chromosomes and a wooly mammoth only has 58! Both insects on the chart have fewer than 10 chromosomes. There doesn’t seem to be a relationship between organism complexity and the number of chromosomes. 7. Evaluate if you need to change your answers to questions #1-2. Give a 2 sentence rationale explaining why you changed or kept your answers. Answers will vary, but could include: A rabbit seems similar to a cat so I think a cat will have around 44 chromosomes. A chimpanzee has 48, and my teacher tells me that chimps and humans are alike. Copyright © 2009 Pfizer Inc. All rights reserved. 2.4 Cats and You: DNA Doubles? Chromosome Numbers Chart Organism Number of Chromosomes Algae 148 Carp (fish) 104 Chicken 78 Chimpanzee 48 Cotton 26 Cow 60 Coyote 78 Drosophila melanogaster (fruit fly) 8 Duck-billed Platypus 52 Earthworm 36 Elephant 56 Giraffe 62 Gorilla 48 Horse 64 Kangaroo 12 Mango 40 Mosquito 6 Mouse 40 Orangutan 48 Pig 38 Pigeon 80 Potato 48 Rabbit 44 Raccoon 38 Rat 42 Sheep 54 Shrimp 254 Snail 24 Starfish 36 Tiger 38 Wheat 42 Copyright © 2009 Pfizer Inc. All rights reserved. 2.5 Cats and You: DNA Doubles? Cat and Human Chromosome Comparisons CAT CHROMOSOMES 19 Copyright © 2009 Pfizer Inc. All rights reserved. 2.6 Cats and You: DNA Doubles? The Human Genome Project Completion: On April 14, 2003 the National Human Genome Research Institute (NHGRI), the Department of Energy (DOE) and their partners in the International Human Genome Sequencing Consortium announced the successful completion of the Human Genome Project. What is a genome? A genome is an organism's complete set of deoxyribonucleic acid (DNA), a chemical compound that contains the genetic instructions needed to develop and direct the activities of every organism. DNA molecules are made of two twisting, paired strands. Each strand is made of four chemical units, called nucleotide bases. The bases are adenine (A), thymine (T), guanine (G) and cytosine (C). Bases on opposite strands pair specifically; an A always pairs with a T, and a C always with a G. The human genome contains approximately 3 billion of these base pairs, which reside in the 23 pairs of chromosomes within the nucleus of all our cells. Each chromosome contains hundreds to thousands of genes, which carry the instructions for making proteins. Each of the estimated 30,000 genes in the human genome makes an average of three proteins. What Does the Draft Human Genome Sequence Tell Us? By the Numbers The human genome contains 3.1647 billion bases The average gene consists of 3000 bases, but sizes vary greatly. The total number of genes is estimated at 30,000 Almost all (99.9%) bases are exactly the same in all people. The functions are unknown for over 50% of discovered genes. Copyright © 2009 Pfizer Inc. All rights reserved. 2.7 Is the human genome completely sequenced? Yes - within the limits of today's technology, the human genome is as complete as it can be. The gene-containing portion of the genome is complete in nearly every functional way for the purposes of scientific research and is freely and publicly available. Even though the Human Genome Project is now completed, scientists will continue to develop and apply new technologies. For its part, NHGRI will continue to support a wide range of research to develop new sequencing technologies, to interpret the human sequence and to use the newfound understanding of the human genome to improve human health. Whose DNA was sequenced for the Human Genome Project? This is intentionally not known to protect the volunteers who provided DNA samples for sequencing. The sequence is derived from the DNA of several volunteers. To ensure that the identities of the volunteers cannot be revealed, a careful process was developed to recruit the volunteers and to collect and maintain the blood samples that were the source of the DNA. Applications, Future Challenges Deriving meaningful knowledge from the DNA sequence will define research through the coming decades to inform our understanding of biological systems. This enormous task will require the expertise and creativity of tens of thousands of scientists from varied disciplines in both the public and private sectors worldwide. The draft sequence already is having an impact on finding genes associated with disease. A number of genes have been pinpointed and associated with breast cancer, muscle disease, deafness, and blindness. Additionally, finding the DNA sequences underlying such common diseases as cardiovascular disease, diabetes, arthritis, and cancers is being aided by the human variation maps (SNPs) generated in the HGP in cooperation with the private sector. These genes and SNPs provide focused targets for the development of effective new therapies. One of the greatest impacts of having the sequence may well be in enabling an entirely new approach to biological research. In the past, researchers studied one or a few genes at a time. With whole-genome sequences and new high-throughput technologies, they can approach questions systematically and on a grand scale. They can study all the genes in a genome, for example, or all the transcripts in a particular tissue or organ or tumor, or how tens of thousands of genes and proteins work together in interconnected networks to orchestrate the chemistry of life. Copyright © 2009 Pfizer Inc. All rights reserved. 2.8 Cats and You: DNA Doubles? Domestic Cat Genome Sequenced ScienceDaily (Nov. 1, 2007) — Of all of the cats in the world, Cinnamon was chosen to be the definitive genetic model for all cats in a project called the feline genome project. By donating a small vial of blood, Cinnamon provided scientists the wherewithal to map the feline genetic structure, eventually allowing for each gene's function to be noted and studied. (Credit: University of Missouri College of Veterinary Medicine) The DNA of a 4-year-old Abyssinian cat named Cinnamon, whose well-documented lineage can be traced back several generations to Sweden, has been sequenced. Cinnamon is one of several mammals that are currently being analyzed using "light" genome sequence coverage. The similarity between the cat genome and six recently completed mammalian genomes (human, chimpanzee, mouse, rat, dog, and cow) allowed the scientists to identify 20,285 genes in the cat genome. The comparison also revealed hundreds of chromosomal rearrangements that have occurred among the different lineages of mammals since they diverged from ancestors that roamed the earth among the dinosaurs some 100 million years ago. The genome sequence analysis is certainly expected to lead to health benefits for domestic cats, 90 million of which are owned by Americans alone, according to The Humane Society. But the domestic cat also serves as an excellent model for human disease, which is one reason why the National Human Genome Research Institute (NHGRI) initially authorized the cat genome sequencing project three years ago. Domestic cats possess over 250 naturally occurring hereditary disorders, many of which are similar to genetic pathologies in humans. For example, Cinnamon's pedigree carries a genetic mutation that causes retinitis pigmentosa, a degenerative eye disease that can lead to blindness. In humans, retinitis pigmentosa affects 1 in 3,500 Americans. The domestic cat also serves as an excellent model for human infectious diseases, including Copyright © 2009 Pfizer Inc. All rights reserved. 2.9 HIV/AIDS. Feline immunodeficiency virus (FIV) is a genetic relative of human immunodeficiency virus (HIV), which causes AIDS. Using the cat genome sequence data, the researchers identified several hundred thousand genomic variants which can be used to determine the genetic basis for common hereditary diseases. The scientists have already used these variants to identify the causative gene for Cinnamon's retinitis pigmentosa. These variants will also be useful for parentage testing, forensic analysis, and studies of evolution, including the reconstruction of domestication processes, fancy breed development, and ecological adaptation among the great roaring cats. About Cinnamon Cinnamon is a shy cat. While the other cats in Dr. Kristina Narfstrom's ophthalmology research center at the University of Missouri College of Veterinary Medicine vie for the attention of veterinary medical students and technicians, Cinnamon is more reticent, preferring to sit quietly and watch the other cats play and carouse. Future research Dr. Narfstrom predicts that the feline genome will rapidly shed new research light on a number of cat and human medical problems including virus-mediated diseases, respiratory problems, cancers, AIDS, immunity problems, muscular dystrophy, polycystic kidney disorder, and Dr. Narfstrom's research specialty, retinal eye diseases. Cats and humans share about 250 genetic diseases. The Cat Genome Project is based at the National Cancer Institute (Frederick, Md.). Cinnamon lives in a cat colony maintained at the University of Missouri-Columbia. The sequencing data were generated by Agencourt Bioscience Corporation (Beverly, Mass.). A report that appears in the scientific journal Genome Research details the first assembly, annotation, and comparative analysis of the domestic cat genome (Felis catus). Adapted from materials provided by Cold Spring Harbor Laboratory, via EurekAlert!, a service of AAAS. Copyright © 2009 Pfizer Inc. All rights reserved. 2.10 Cats and You: DNA Doubles? Question Human Cat How many chromosomes does each mammal have? How many genes does each mammal have? What year was the genome sequenced? Where did the DNA sample come from? What is a benefit to sequencing this animals DNA? Decoding the DNA sequence of domestic cats cost an estimated $2.4 million. Was the expense worth it? Do you think scientists should continue to research the cat DNA? Why or why not? Support your opinion with facts from the articles and your knowledge of genetics. Copyright © 2009 Pfizer Inc. All rights reserved. 2.11 Cats and You: DNA Doubles? Vocabulary Word Definition chromosome A DNA molecule which is curled around a protein molecule genome An organism’s complete set of DNA DNA (deoxyribonucleic acid) Drawing The chemical compounds that have the genetic codes for an organism (these chemicals make you a human and not a cat!) gene An inherited instruction for a particular characteristic; it’s a section of DNA bases A type of chemical found in genetic material; there are 4 bases that combine in millions of ways to make genes Copyright © 2009 Pfizer Inc. All rights reserved. 2.12