MEC_4657_sm_TableS1

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Supplementary Table 1. List of some representative publications that have used resistance surfaces to illustrate different parameterization methods. Not all studies used resistance surfaces in conjunction with genetic data, but created resistance surfaces that potentially could be useful for landscape genetic studies.

For studies that used expert opinion, we noted whether resistance values were arbitrarily given categorical values or were continuous.

Study Authors

Balkenhol

Broquet et al.

Chardon et al.

Chietkiewicz &

Boyce

Year

2009

2006

2003

Clark et al.

Coulon et al.

Cushman

Driezen

Epps et al.

Gonzales et al.

Janin

Lada et al.

Laiola & Tella

LaRue & Nielsen

O’Brien et al.

et al.

Koscinski

Lee-Yaw et al.

et al.

Ovaskainen et al.

et al.

Michels et al.

McRae & Beier et al.

2009

2008

2004

2006

2007

2007

2007

2009

2009

2008

2006

2008

2009

2007

2001

2006

2008

Perez-Espona et al.

2008

Radespiel et al.

2008

Schweiger et al.

Spear & Storfer

Spear et al.

Stevens et al.

2004

2008

2005

2006

Verbeylen et al.

Vignieri

Vos et al.

Wang et al.

Wang et al.

Zalewski et al.

2003

2005

2001

2008

2009

2009

Genetic data used? Parameterization Method(s)

Y

Y

N expert opinion (continuous), optimization expert opinion (categorical) expert opinion (categorical), optimization

N

Y

Y

Y

N

Y

N

N

Y

Y

N

N

Y

Y

Y

N

N

Y

Y

Y

Y

Y

Y

N

Y

Y

Y

Y

Y radio telemetry expert opinion (categorical) expert opinion (continuous) expert opinion (continuous, categorical), optimization radio telemetry radio telemetry, optimization expert opinion, presence-absence optimization expert opinion (categorical) expert opinion (categorical), optimization distribution model expert opinion expert opinion (categorical, continuous), optimization expert opinion (binary) movement rate

Radio telemetry, logistic regression mark-recapture data expert opinion (categorical, continuous), optimization expert opinion (categorical) expert opinion (categorical), optimization expert opinion (categorical, continuous), optimization expert opinion (continuous) experimental movement expert opinion (categorical), optimization expert opinion (categorical) expert opinion (continuous) distribution model, optimization optimization expert opinion (categorical), optimization

Supplementary Table References Cited

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Broquet T, Ray N, Petit E, Fryzell JM, Burel F (2006) Genetic isolation by distance and landscape connectivity in the American marten ( Martes americana ). Landscape Ecology

21 , 877-889.

Chardon JP, Ariaensen F, Matthysen E (2003) Incorporating landscape elements into a connectivity measure: a case study of the Speckled wood butterfly ( Parage aegeria L.).

Landscape Ecology 18 , 561-573.

Chietkiewicz CB, Boyce, MS (2009) Use of resource selection functions to identify conservation corridors. Journal of Applied Ecology , 46 , 1036-1047.

Clark RW, Brown WS, Stechert R, Zamudio KR (2008) Integrating individual behavior and landscape genetics: the population structure of timber rattlesnake hibernacula. Molecular

Ecology , 17 , 719-730.

Coulon A, Cosson JF, Angibault JM, Cargnelutti B, Galan M, Morellet N, Petit E, Aulagnier S,

Hewison AJ (2004) Landscape connectivity influences gene flow in a roe deer population inhabiting a fragmented landscape: an individual-based approach. Molecular Ecology , 13 ,

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Cushman SA, McKelvey KS, Hayden J, Schwartz MK (2006) Gene flow in complex landscapes:

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Driezen K, Adriaensen F, Rondinini C, Doncaster CP, Matthysen E (2007) Evaluating least-cost model predictions with empirical dispersal data: A case-study using radiotracking data of hedgehogs ( Erinaceus europaeus ). Ecological Modelling , 209, 314-322.

Epps CW, Wehausen JD, Bleich VC, Torres SG, Brashares JS (2007) Optimizing dispersal and corridor models using landscape genetics. Journal of Applied Ecology 44 , 714-724.

Gonzales EK, Gergel SE (2007) Testing assumptions of cost surface analysis—a tool for invasive species management. Landscape Ecology , 22 , 1155 – 1168.

Janin A, Léna JP, Ray N, Delacourt C, Allemand P, Joly P (2009) Assessing landscape connectivity with calibrated cost-distance modeling: predicting common toad distribution in a context of spreading agriculture. Journal of Applied Ecology , 46 , 833-841.

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Lada H, Thomson JR, MacNally R, Taylor AC (2008) Impacts of massive landscape change on a carnivorous marsupial in south-eastern Australia: inferences from landscape genetic analysis. Journal of Applied Ecology , 45 , 1732-1741.

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LaRue MA, Nielsen CK (2008) Modelling potential dispersal corridors for cougars in midwestern North America using least-cost path methods. Ecological Modelling , 212 ,

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Michels E, Cottenie K, Neys L, De Gelas K, Coppin P, De Meester L (2001) Geographical and genetic distances among zooplankton populations in a set of interconnected ponds: a plea for using GIS modeling of the effective geographical distance. Molecular Ecology 10 ,

1929-1938.

O'Brien D, Manseau M, Fall A, Fortin M-J (2006) Testing the importance of spatial configuration of winter habitat for woodland caribou: An application of graph theory.

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Ovaskainen O, Luoto M, Ikonen I, Rekola H, Meyke E, Kuussaari M (2008) Am empirical test of a diffusion model: predicting clouded apollo movements in a novel environment.

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Perez-Espona S, Perez-Barberia FJ, McLeod JE, Jiggins CD, Gordon IJ, Pemberton JM (2008)

Landscape features affect gene flow of Scottish Highland red deer ( Cervus elaphus ).

Molecular Ecology , 17 , 981-996.

Radespiel U, Rakotondravony R, Chikhi L (2008) Natural and anthropogenic determinants of genetic structure in the largest remaining population of the endangered golden-brown mouse lemur, Microcebus ravelobensis . American Journal of Primatology , 70 , 860-870.

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Spear SF, Storfer A (2008) Landscape genetic structure of tailed frogs in protected versus managed forests. Molecular Ecology , 17 , 4642-4656.

Spear SF, Peterson CR, Matocq MD, Storfer A (2005) Landscape genetics of the blotched tiger salamander. Molecular Ecology , 14 , 2553-2564.

Stevens VM, Verkenne C, Vandewoestijne S, Wesselingh RA, Baguette M (2006) Gene flow and functional connectivity in the natterjack toad. Molecular Ecology , 15 , 2333-2344.

Verbeylen G, De Bruyn L, Adriaensen F, Matthysen E (2003) Does matrix resistance influence red squirrel ( Sciurus vulgaris L. 1758) distribution in an urban landscape? Landscape

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Vignieri SN (2005) Streams over mountains: influence of riparian connectivity on gene flow in the Pacific jumping mouse ( Zapus trinotatus ). Molecular Ecology , 14 , 1925-1937.

Vos CC, Antonisse-de Jong AG, Goedhart PW, Smulders MJM (2001) Genetic similarity as a measure for connectivity between fragmented populations of the moor frog ( Rana arvalis ). Heredity , 86 , 598-608.

Wang IJ, Savage WK, Shaffer HB (2009) Landscape genetics and least-cost path analysis reveal unexpected dispersal routes in the California tiger salamander ( Ambystoma californiense ).

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Wang Y-H, Yang K-C, Bridgman CL, Lin L-K (2008) Habitat suitability modeling to correlate gene flow with landscape connectivity. Landscape Ecology , 23 , 989-1000.

Zalewski A, Piertney SB, Zalewska H, Lambin X (2009) Landscape barriers reduce gene flow in an invasive carnivore: geographical and local genetic structure of American mink in

Scotland. Molecular Ecology , 18 , 1601-1615.

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