Supplementary Table 1. List of some representative publications that have used resistance surfaces to illustrate different parameterization methods. Not all studies used resistance surfaces in conjunction with genetic data, but created resistance surfaces that potentially could be useful for landscape genetic studies.
For studies that used expert opinion, we noted whether resistance values were arbitrarily given categorical values or were continuous.
Study Authors
Balkenhol
Broquet et al.
Chardon et al.
Chietkiewicz &
Boyce
Year
2009
2006
2003
Clark et al.
Coulon et al.
Cushman
Driezen
Epps et al.
Gonzales et al.
Janin
Lada et al.
Laiola & Tella
LaRue & Nielsen
O’Brien et al.
et al.
Koscinski
Lee-Yaw et al.
et al.
Ovaskainen et al.
et al.
Michels et al.
McRae & Beier et al.
2009
2008
2004
2006
2007
2007
2007
2009
2009
2008
2006
2008
2009
2007
2001
2006
2008
Perez-Espona et al.
2008
Radespiel et al.
2008
Schweiger et al.
Spear & Storfer
Spear et al.
Stevens et al.
2004
2008
2005
2006
Verbeylen et al.
Vignieri
Vos et al.
Wang et al.
Wang et al.
Zalewski et al.
2003
2005
2001
2008
2009
2009
Genetic data used? Parameterization Method(s)
Y
Y
N expert opinion (continuous), optimization expert opinion (categorical) expert opinion (categorical), optimization
N
Y
Y
Y
N
Y
N
N
Y
Y
N
N
Y
Y
Y
N
N
Y
Y
Y
Y
Y
Y
N
Y
Y
Y
Y
Y radio telemetry expert opinion (categorical) expert opinion (continuous) expert opinion (continuous, categorical), optimization radio telemetry radio telemetry, optimization expert opinion, presence-absence optimization expert opinion (categorical) expert opinion (categorical), optimization distribution model expert opinion expert opinion (categorical, continuous), optimization expert opinion (binary) movement rate
Radio telemetry, logistic regression mark-recapture data expert opinion (categorical, continuous), optimization expert opinion (categorical) expert opinion (categorical), optimization expert opinion (categorical, continuous), optimization expert opinion (continuous) experimental movement expert opinion (categorical), optimization expert opinion (categorical) expert opinion (continuous) distribution model, optimization optimization expert opinion (categorical), optimization
Supplementary Table References Cited
Balkenhol N (2009) Evaluating and improving analytical approaches through simulations and wildlife case studies . PhD Thesis, University of Idaho.
Broquet T, Ray N, Petit E, Fryzell JM, Burel F (2006) Genetic isolation by distance and landscape connectivity in the American marten ( Martes americana ). Landscape Ecology
21 , 877-889.
Chardon JP, Ariaensen F, Matthysen E (2003) Incorporating landscape elements into a connectivity measure: a case study of the Speckled wood butterfly ( Parage aegeria L.).
Landscape Ecology 18 , 561-573.
Chietkiewicz CB, Boyce, MS (2009) Use of resource selection functions to identify conservation corridors. Journal of Applied Ecology , 46 , 1036-1047.
Clark RW, Brown WS, Stechert R, Zamudio KR (2008) Integrating individual behavior and landscape genetics: the population structure of timber rattlesnake hibernacula. Molecular
Ecology , 17 , 719-730.
Coulon A, Cosson JF, Angibault JM, Cargnelutti B, Galan M, Morellet N, Petit E, Aulagnier S,
Hewison AJ (2004) Landscape connectivity influences gene flow in a roe deer population inhabiting a fragmented landscape: an individual-based approach. Molecular Ecology , 13 ,
2841-2850.
Cushman SA, McKelvey KS, Hayden J, Schwartz MK (2006) Gene flow in complex landscapes:
Testing multiple hypotheses with causal modeling. American Naturalist , 168 , 486-499.
Driezen K, Adriaensen F, Rondinini C, Doncaster CP, Matthysen E (2007) Evaluating least-cost model predictions with empirical dispersal data: A case-study using radiotracking data of hedgehogs ( Erinaceus europaeus ). Ecological Modelling , 209, 314-322.
Epps CW, Wehausen JD, Bleich VC, Torres SG, Brashares JS (2007) Optimizing dispersal and corridor models using landscape genetics. Journal of Applied Ecology 44 , 714-724.
Gonzales EK, Gergel SE (2007) Testing assumptions of cost surface analysis—a tool for invasive species management. Landscape Ecology , 22 , 1155 – 1168.
Janin A, Léna JP, Ray N, Delacourt C, Allemand P, Joly P (2009) Assessing landscape connectivity with calibrated cost-distance modeling: predicting common toad distribution in a context of spreading agriculture. Journal of Applied Ecology , 46 , 833-841.
Koscinski D, Yates AG, Handford P, Lougheed SC (2009) Effects on landscape and history on diversification on a montane, stream-breeding amphibian. Journal of Biogeography , 36 ,
255-265.
Lada H, Thomson JR, MacNally R, Taylor AC (2008) Impacts of massive landscape change on a carnivorous marsupial in south-eastern Australia: inferences from landscape genetic analysis. Journal of Applied Ecology , 45 , 1732-1741.
Laiola P, Tella JL (2006) Landscape bioacoustics allow detection of the effects of habitat patchiness on population structure. Ecology , 87 , 1203-1214.
LaRue MA, Nielsen CK (2008) Modelling potential dispersal corridors for cougars in midwestern North America using least-cost path methods. Ecological Modelling , 212 ,
372-381.
Lee-Yaw JA, Davidson A, McRae BH, Green DM (2009) Do landscape processes predict phylogeographic patterns in the wood frog? Molecular Ecology , 18 , 1863-1874.
McRae BH, Beier P (2007) Circuit theory predicts gene flow in plant and animal populations.
Proceedings of the National Academy of Sciences , 104, 19885-19890.
Michels E, Cottenie K, Neys L, De Gelas K, Coppin P, De Meester L (2001) Geographical and genetic distances among zooplankton populations in a set of interconnected ponds: a plea for using GIS modeling of the effective geographical distance. Molecular Ecology 10 ,
1929-1938.
O'Brien D, Manseau M, Fall A, Fortin M-J (2006) Testing the importance of spatial configuration of winter habitat for woodland caribou: An application of graph theory.
Biological Conservation , 130 , 70-83.
Ovaskainen O, Luoto M, Ikonen I, Rekola H, Meyke E, Kuussaari M (2008) Am empirical test of a diffusion model: predicting clouded apollo movements in a novel environment.
American Naturalist , 171 , 610-619.
Perez-Espona S, Perez-Barberia FJ, McLeod JE, Jiggins CD, Gordon IJ, Pemberton JM (2008)
Landscape features affect gene flow of Scottish Highland red deer ( Cervus elaphus ).
Molecular Ecology , 17 , 981-996.
Radespiel U, Rakotondravony R, Chikhi L (2008) Natural and anthropogenic determinants of genetic structure in the largest remaining population of the endangered golden-brown mouse lemur, Microcebus ravelobensis . American Journal of Primatology , 70 , 860-870.
Schweiger O, Frenzel M, Durka W (2004) Spatial genetic structure in a metapopulation of the land snail Cepaea nemoralis (Gastropoda: Helicidae). Molecular Ecology , 13 , 3645-
3655.
Spear SF, Storfer A (2008) Landscape genetic structure of tailed frogs in protected versus managed forests. Molecular Ecology , 17 , 4642-4656.
Spear SF, Peterson CR, Matocq MD, Storfer A (2005) Landscape genetics of the blotched tiger salamander. Molecular Ecology , 14 , 2553-2564.
Stevens VM, Verkenne C, Vandewoestijne S, Wesselingh RA, Baguette M (2006) Gene flow and functional connectivity in the natterjack toad. Molecular Ecology , 15 , 2333-2344.
Verbeylen G, De Bruyn L, Adriaensen F, Matthysen E (2003) Does matrix resistance influence red squirrel ( Sciurus vulgaris L. 1758) distribution in an urban landscape? Landscape
Ecology , 18 , 791-805.
Vignieri SN (2005) Streams over mountains: influence of riparian connectivity on gene flow in the Pacific jumping mouse ( Zapus trinotatus ). Molecular Ecology , 14 , 1925-1937.
Vos CC, Antonisse-de Jong AG, Goedhart PW, Smulders MJM (2001) Genetic similarity as a measure for connectivity between fragmented populations of the moor frog ( Rana arvalis ). Heredity , 86 , 598-608.
Wang IJ, Savage WK, Shaffer HB (2009) Landscape genetics and least-cost path analysis reveal unexpected dispersal routes in the California tiger salamander ( Ambystoma californiense ).
Molecular Ecology , 18 , 1365-1374.
Wang Y-H, Yang K-C, Bridgman CL, Lin L-K (2008) Habitat suitability modeling to correlate gene flow with landscape connectivity. Landscape Ecology , 23 , 989-1000.
Zalewski A, Piertney SB, Zalewska H, Lambin X (2009) Landscape barriers reduce gene flow in an invasive carnivore: geographical and local genetic structure of American mink in
Scotland. Molecular Ecology , 18 , 1601-1615.