Electronic supplementary material Indirect trophic interactions with an invasive species affect phenotypic divergence in a top consumer Hirsch P.E.* 1, Eklöv P. 2, Svanbäck R. 3 Department of Ecology and Genetics/Limnology Evolutionary Biology Centre, Uppsala University Norbyvägen 18 D SE-75236 Uppsala 1 email: philipp.hirsch@unibas.ch 2 email: peter.eklov@ebc.uu.se 3 email: richard.svanback@ebc.uu.se * current address corresponding author: University of Basel Program Man-Society-Environment Vesalgasse 1 CH-4051 Basel 1 Detailed description of the lakes We are aware of the fact that the studied lakes might potentially differ in other parameters than the presence of zebra mussels. To approach these differences we provide detailed background data on the lakes below. Overall, the lack of significant differences between the lakes with and without zebra mussels lends strong support to our conclusion from the main article, that morphological divergence between littoral and pelagic perch is an indirect effect of the zebra mussels. Limnological, geographical and geological properties of lakes We chose lakes located at maximum 80 km apart from each other and with a high degree of comparability in a large number of important abiotic factors (Tab. S3). All lakes lie on acid to intermediate intrusive bedrock (i.e. granite, granodiorite) (SGU 2010). No major directional differences in quantity or quality of aquatic vegetation exist and also the bottom structure and hence the bottom substrate does not show any directional differences between lakes with and without zebra mussels (Brunberg and Blomqvist 1998; personal observation). The lakes show some differences in lake area and lakes with zebra mussels are on average slightly, though not significantly, deeper and larger than lakes without zebra mussels. Lake area is a good proxy for a large range of biotic and abiotic features of lakes ranging from species richness to littoral production relative to whole-lake production (Post, et al. 2000; Vadeboncoeur, et al. 2008). Also maximum depth or mean depth might be indirectly related to the phenotypic divergence of perch. However, in a large lake survey whose data we used here for demonstration (lakes not containing zebra mussels, P. Eklöv unpublished data) there was no correlation or even trend found between lake area, mean or maximum depth, and morphological divergence of perch (n=9; maximum depths of lakes ranging from 1.9m to 21m; r =-0.29, 0.26, 0.17, respectively; all P>0.52). Moreover, the divergence between littoral and pelagic perch in all lakes without zebra mussels was in general substantially lower (Δ MI 2 = 2.0 ±0.4 SD) than in the lakes presented here with zebra mussels (Δ MI = 2.8 ±0.3SD). We therefore conclude that differences in lake area or depth did not influence the morphological divergence pattern we observed. To further assess the relative amount of littoral to pelagic habitat we calculated the shoreline development index (SDI) after Kent and Wong (1982). Based on detailed digitized lake maps with similar scales provided in Brunberg and Blomqvist (1998) or by the local municipalities we used the free software ImageJ to measure the lakes’ perimeters. Though only an indirect measure, the SDI can be used to differentiate between reticulate and circular lake shapes and serves as a proxy for the available littoral habitat relative to the pelagic habitat, in particular for fish populations (Dolson et al. 2009). While there was great variation in SDI among the lakes, we found no difference in SDI between lakes with and without zebra mussels (Table S3). Human influences To our knowledge no commercial fisheries are conducted in any of the lakes. Accordingly, no records of commercial fisheries exist. In all lakes the fishing rights belong to the local land owners except for approx. 2% of the lake Valloxen’s area and approximately one third of the lake Erken, which are owned by the local municipality. Hence, no detailed data on recreational fisheries exist. Private fishing rights however, do not allow for public recreational fishing. All lakes are situated in rural areas, which typically entail a rather low usage by recreational anglers (Arlinghaus, et al. 2008). In addition, there is very limited motorized boat access (no public boat launching sites which are accessible via ordinary roads). This led us to the conclusion that commercial or recreational fisheries are negligible in the studied lakes. Other human influences as water-level regulation and shoreline development can also be dismissed due to their rural location reflecting a pristine nature of lakes which are subject to 3 only a minimum of human influences. Merely Lake Valloxen’s shoreline contains a small strip of ca. 1 km rip-rap revetment. Zebra mussel presence, potential competitor biomass and predation threat Three of the lakes contain lake-wide occurrence of zebra mussels. Estimates of zebra mussel density were only available in two of the three zebra mussel lakes and were 323 and 342 individuals m-2, respectively. We assume zebra mussel density in the lake were we do not have density data to be similar. In one lake zebra mussels were first observed in the late 1970s (Naddafi et al. 2007). No first record exists for the other two lakes. However, since zebra mussels invaded the catchment area where the lakes are situated as early as 1923 (Grandin et al. 2006) we assume that all lakes contain zebra mussels since several decades. All lakes host a similar fish fauna which is dominated (> 95% of total biomass) by perch (Perca fluviatilis) and roach (Rutilus rutilus). We also assessed the abundance of non-piscivorous perch (intraspecific competitors) and roach (interspecific competitors) through CPUE (catch per unit effort). Since roach can efficiently feed on zooplankton through their ontogeny (Svanbäck et al. 2008) we assumed that all size-classes of roach could have an impact on zooplankton and hence constitute possible competitors of perch. In northern lakes as the ones studied here, perch switch from foraging on invertebrates or zooplankton to become more piscivorous from a total length of 120mm on (Persson 1988). We accordingly classified an individual’s biomass into non-piscivorous and hence a possible competitor. The data are presented in Table S3. Another potentially important factor to consider in the comparison of the study lakes is predation pressure. Previous studies on perch morphology that involved predation threat as an experimental factor found that, even in the face of predation threat, resource acquisition is the factor ultimately determining perch morphology (Eklöv and Svanbäck 2006). Moreover, the perch we sampled in our lakes were on average around 120 mm in total length (with no directional difference in size between mussel and non-mussel lakes see table S4). Previous 4 research suggests that predation threat is an important environmental factor for juvenile perch smaller than 100mm total length. With larger sizes however, the predator-induced mortality in perch decreases steeply (Svanbäck and Eklöv 2011). We are thus confident that, while in general an important factor to consider, predation threat in our study did not cofound the differences we observed in our study. Caveats and chances of current and future statistical testing of this study’s hypotheses. Clearly, despite the statistical models show significant effects there is some overlap in the means of some parameters between lakes with and without mussels. This is no surprise given the large number of parameters we considered on several trophic levels and the complexity of different lakes as replicate units. Yet, in our study we consider a wide range of parameters and possibly confounding factors that, in sum, allowed us to present the effect of zebra mussels as the one most plausible explanation for differences in perch divergence. A future experimental test for the effect of zebra mussels should ideally include artificial lakes or mesocosms that are large enough to allow for lake-like food webs to develop but small enough to be experimentally manipulated (i.e. addition or removal of species). 5 Table S1. Multiple analysis of covariance (MANCOVA) of body-shape of perch (Perca fluviatilis). Body-shape as response variable comprises all partial and uniform scores from the geometric morphometric analysis. Centroid size was used as a covariate accounting for the size of individuals. The significant interaction term of the two categorical predictor variables lake and form of perch (littoral or pelagic) suggests that differences in body-shape between forms varies across lakes. Wilks‘ λ F lake form (littoral/pelagic) centroid size 0.33 5.37 7 252 <0.000 0.92 2.9 1 36 <0.000 0.83 6.57 1 36 <0.000 lake*form 0.6 2.37 7 252 <0.000 df df Effect P 6 Table S2. Statistics of the lake-wise discriminant function analyses (DFA) and the DFA that combined all lakes in one analysis. As the a priori discriminant factor we used lake habitat (littoral vs. pelagic) and the uniform and partial warp scores from the multivariate geometric shape analysis were used as input data (see Materials and Methods section in the main article for more details). Discriminant success for each DFA is presented as the percentage of the individuals that the DFA correctly assigned into the habitat in which they were caught. zebra mussel lake Wilks' λ F P with with with without without without without without Erken Lang Funbo Vallox Fälaren St. Hall Hall Strand 0.27 0.23 0.27 0.41 0.34 0.55 0.33 0.55 15.35 10.46 6.23 3.99 2.42 2.50 2.72 3.98 <0.0000 <0.0000 <0.0000 <0.0000 0.0029 <0.0001 <0.0006 <0.0000 0.79 8.71 <0.0000 All lakes combined Dicriminant success (% correct) littoral pelagic total 95.65 99.00 98.38 97.22 90.91 95.39 97.92 95.83 96.67 83.58 89.19 86.52 80.77 98.15 92.50 70.59 90.72 83.78 92.59 87.10 90.59 79.27 87.40 84.21 43.54 87.51 73.01 7 Table S3. Background data on the studied lakes with (grey shaded) and without zebra mussels. Intraspecific (intraspec.) and interspecific (interspec.) competitor density is given in catch per unit effort (CPUE). SDI stands for shoreline development index after Kent and Wong (1982). For orientation purposes the data for the phenotypic divergence are also given as Δ MI. Δ MI refers to the difference in means of all morphological indices (MI) from all individuals in the littoral and pelagic zone in each lake. We also provide the P-values of T-tests testing for differences between lakes with and without zebra mussels with the different background parameters as dependent variable. Lake Funbo Lang Erken Vallox Falar Hall St.Hall Strand T-tests lakes with vs lakes without zebra mussels Secchi depth (m) Total P (µg mL-1) Chl a content (µ L-1) SDI mean max surface retention depth depth area (ha) time (days) (m) (m) 2.6 5.6 5.4 1.1 2.5 3.5 1.6 1.5 66.25 20.34 35.31 70.44 22.22 29.98 16.14 46.96 6.5 4.89 5.78 81.83 5.88 13.35 21.29 12.86 15.70 10.75 23.76 16.17 13.58 12.25 13.96 16.52 0.055 0.845 0.057 0.617 0.296 1.7 6.3 9.0 3.8 1.5 5.0 1.5 1.7 Intraspec. Intraspec. Intraspec. Interspec. Interspec. Interspec. competitor competitor competitor competitor competitor competitor (perch) (perch) CPUE (perch) (roach) (roach) (roach) CPUE(g net-1) (g net-1) CPUE(g net-1) CPUE(g net-1) CPUE(g net-1) CPUE(g net-1) pelagic littoral total pelagial littoral total 5.5 12.5 21.0 9.0 2.6 10.0 4.4 4.0 207 250 2370 270 205 20 19 13 114 1059 2409 620 249 730 300 180 2105.0 509.1 1834.7 301.8 1801.8 4695.6 1082.4 6091.7 4543.0 443.1 139.5 3189.6 452.4 1674.4 669.5 3159.9 6648.1 952.2 1974.2 3491.4 2254.2 6370.0 1751.9 9251.6 651.6 1040.0 1180.4 219.4 111.2 3933.4 883.9 713.1 1649.7 131.7 613.0 2981.8 161.9 1289.1 472.7 1700.3 2301.3 1171.7 1793.4 3201.3 273.1 5222.4 1356.6 2413.5 0.254 0.362 0.363 0.326 0.943 0.555 0.780 0.466 0.451 8 Table S4. Habitat-specific means of all analyzed variables for all the lakes. The bold P-value indicates significant differences after correcting the alpha-level by applying the FDR (False Discovery Rate)-add-in “QVALUE” in R (Storey 2004) zebra mussel lake with with with without without without without without with with with without without without without without Erken Funbo Lang Hall St.Hall Strand Vallox Falar Erken Funbo Lang Hall St.Hall Strand Vallox Falar infaunal habitat taxa as mean % of diet littoral littoral littoral littoral littoral littoral littoral littoral pelagic pelagic pelagic pelagic pelagic pelagic pelagic pelagic epifaunal cladocera as taxa as mean % of mean % of diet diet copepods and fish as other mean % zooplanton as of diet mean % of diet density large cladocera [>0.46mm] -1 (mg L ) density small density cladocera cyclopoid [<0.46mm] (mg copepods -1 -1 L ) (mg L ) density calanoid copepods -1 (mg L ) indiv zoopl epi -faunal infaunal biomass taxa (mg taxa (mg -2 -2 (mm) m ) m ) indiv benthic biomass (mg) total length (mm) age (years) growth 1. year (mm) 8.54 1.32 45.79 42.50 15.03 12.82 11.63 30.39 1.24 8.17 7.21 9.03 5.50 6.70 13.02 5.29 18.98 12.97 17.73 21.08 5.72 29.67 8.68 17.16 2.38 18.56 4.76 2.94 2.29 6.53 7.88 0.34 59.18 66.98 27.94 1.79 37.23 30.80 6.53 26.22 65.29 48.80 80.12 24.12 9.78 29.54 22.34 36.03 13.30 16.04 5.21 30.08 42.02 20.95 7.20 21.34 29.31 20.16 3.14 60.96 64.49 12.96 11.98 58.34 0.00 2.69 3.33 4.55 0.00 4.26 65.96 4.88 1.82 4.31 4.76 2.94 17.94 44.26 44.78 0.00 79.31 70.23 199.12 79.45 2.95 12.44 6.49 16.86 223.82 70.46 130.80 68.74 17.92 24.80 14.12 23.46 2.38 5.42 6.79 67.38 0.05 5.96 1.08 1.95 1.21 0.00 1.70 0.74 0.04 2.17 12.24 0.76 41.15 1.68 13.76 17.95 1.50 6.05 6.78 10.88 51.62 37.53 58.53 99.39 0.93 10.52 50.75 99.89 97.83 2.89 0.17 0.09 0.00 1.18 0.78 0.00 150.48 77.72 12.88 104.60 0.43 41.57 42.28 0.00 0.63 0.51 0.55 0.45 0.50 0.60 0.46 0.52 0.87 0.71 0.80 0.57 0.54 0.63 0.47 0.58 6.15 9.58 4.26 1.87 0.79 0.64 0.24 1.71 0.21 2.02 0.00 0.00 0.06 0.50 4.03 0.00 1.95 0.60 0.16 6.30 1.08 1.40 0.59 3.29 6.60 1.62 0.03 0.02 0.10 0.88 1.93 1.02 0.34 0.46 0.85 0.04 0.24 0.61 0.22 0.24 2.52 1.31 0.10 0.23 0.54 0.14 0.11 0.30 120.77 84.71 74.48 100.16 90.21 99.21 170.71 115.59 117.20 103.10 136.58 80.18 106.70 144.90 161.71 131.55 1.82 1.33 0.55 2.22 1.60 2.03 4.90 3.13 1.67 2.03 2.97 0.94 2.69 3.62 4.76 3.90 87.97 58.54 69.59 59.32 61.22 60.02 51.60 72.49 92.42 61.24 71.84 61.83 65.46 63.18 49.92 73.69 T-tests lakes with vs. lakes without zebra mussels only littoral 0.812 0.984 0.101 0.102 0.330 0.144 0.471 0.475 0.410 0.289 0.064 0.219 0.203 0.324 0.067 0.325 T-tests lakes with vs. lakes without zebra mussels only pelagial 0.417 0.464 0.028 0.140 0.131 0.123 0.392 0.895 0.407 0.017 0.867 0.428 0.271 0.739 0.253 0.310 T-tests difference littoral-pelagic with vs. difference littoral-pelagic without zebra mussels 0.923 0.896 0.702 0.293 0.695 0.788 0.588 0.556 0.736 0.000 0.007 0.123 0.460 0.526 0.553 0.347 9 Figure S1: Box-plots of individuals’ morphological scores in the littoral and the pelagic habitats of lakes with and without zebra mussels. (Boxes :2575% quartiles, medians:heavy horizontal line in center, range:vertical lines, outliers: asterisks). Morphological scores are taken from a combined DFA analysis comprising all lakes. To improve clarity the body morphology visualizations depict a three-fold exaggeration of both the littoral and pelagic ends of the morphology spectrum. Visualizations showing the observed littoral and pelagic ends in each lake are given in figure S2. Littoral end of the morphology space Morphological index (MI) 4 +5 3 2 1 0 -1 -2 -3 -5 -4 Funbo Lang Vallox Falar St.Hall Hall Pelagial Littoral Pelagial Littoral Pelagial Littoral Pelagial Littoral Pelagial Littoral Pelagial Littoral Erken Pelagial Lake Littoral Habitat Littoral Pelagial Pelagic end of the morphology space Strand 10 Figure S2. Visualizations of morphological divergence between littoral and pelagic in all studied lakes. 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