Gel Protocols

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Wong Lab Agarose Gel Protocols

7x10cm Mini-Gel

- wear gloves, and rinse off if exposed to DNA staining reagents

- attach rubber blocks to casting tray

- place comb at one end of tray without touching the rubber blocks

- for a 0.5cm thick minigel of 0.7% agarose, mix:

• 0.21 g agarose powder

• 28 mL deionized water in a 125 mL flask.

Let powder hydrate for 1 minute

- microwave in 30-sec bursts, swirling in between until particles disappear

- swirl under cool water tap until flask just barely hand-holdable

- add 1.5 mL of 20x LB gel buffer with swirling

- slowly pour agarose into casting tray, avoiding bubbles

- let sit for ~30 minutes to solidify (quicker in refrigerator)

- gently lift comb straight up, and remove rubber blocks

- place in gel chamber, filling with 1x running buffer up to gel level (~

200 mL)

13x16 Midi-Gel

- wear gloves, and rinse off if exposed to DNA staining reagents

- place casting tray in gel chamber so rubber gaskets touch sides

- place comb at one end of tray without touching chamber side

- for a 0.5cm thick midigel of 0.7% agarose, mix:

• 0.73 g agarose powder

• 99 mL deionized water in a 250 mL flask.

Let powder hydrate for 1 minute

- microwave in 30-sec bursts, swirling in between until particles disappear

- swirl under cool water tap until flask just barely hand-holdable

- add 5 mL of 20x LB gel buffer with swirling

- slowly pour agarose into casting tray, avoiding bubbles

- let sit for ~30 minutes to solidify (quicker in refrigerator)

- gently lift lift up tray, and turn 90° so wells are near black electrode

- gently lift up comb to remove

- fill gel chamber with 1x running buffer up to gel level (~750 mL)

20x25 Maxi-Gel

- wear gloves, and rinse off if exposed to DNA staining reagents

- insert rubber-gasketed end pieces into casting tray

- place comb at one end of tray without touching end piece

- for a 0.5cm thick maxigel of 0.7% agarose, mix:

• 1.75 g agarose powder

• 245 mL deionized water in a 500 mL flask. Let powder hydrate for 1 minute

- if shorter gel desired, place flat comb in desired slot. Tape down. Make proportionally less agarose

- microwave in 30-sec bursts, swirling in between until particles disappear

- swirl under cool water tap until flask just barely hand-holdable

- add the following solutions with swirling:

• 5 mL 50x TAE buffer (or 12.5 mL of 20x LB buffer)

• 6 µL Ethidium Bromide stock

- slowly pour agarose into casting tray, avoiding bubbles

- let sit for ~30 minutes to solidify (quicker in refrigerator)

- gently lift up comb, and remove end pieces

- place in gel chamber, filling with 1x running buffer up to gel level

(~1700 mL)

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