Name:_____________________ Hardy-Weinberg Assignment Objective: This assignment will give you a chance to apply your knowledge of HardyWeinberg principle and allele frequencies to a real world dataset. Background: Rock pocket mice live in rocky habitats in the American southwest. Coat color in rock pocket mice is largely controlled by a single gene (melanocortin-1-receptor, Mc1r) that has two alleles. Two color morphs (Figure 1) are present within the species such that DD = dark morph Dd = dark morph dd = light morph Figure 1 – Dark (left) and light (right) morphs of the rock pocket mouse. Key Concept Questions 1. What is the Hardy-Weinberg (HW) principle? a. Describe it and give the formula, making sure to define each symbol. p2 + 2 pq + q2 = 1 p and q =allele frequencies for a population The HW principle serves as a null hypothesis model for evolution at a genetic locus. If observed genotype frequencies do not match expected genotype frequencies, then the population is evolving. b. What are the five assumptions of the Hardy-Weinberg principle? 1. 2. 3. 4. 5. no natural selection no genetic drift or random allele frequency changes no gene flow no mutation random mating c. What does the HW principle test? The HW principle tests if the observed genotype frequencies match expected genotype frequencies. d. What can you say about a population if observed genotype frequencies differ from expected genotype frequencies? The population in evolving. Application Questions 2. Sampling of the rock pocket mouse populations in Arizona produced 53 homozygous dark, 49 heterozygous dark, and 76 light mice. Fill in the table by calculating the genotype frequencies. Genotype Number of Mice Genotype Frequency DD 53 0.298 Dd 49 0.275 Dd 76 0.427 3. What are the allele frequencies for D and d given the information from Question 2? D = (53 x 2 + 49)/356 = 0.44 d = (76 x 2 + 49)/356 = 0.56 4. Given the answer to Question 3, what are the expected genotype frequencies in this rock pocket mouse population? p=D q=d p2 = 0.442 = 0.194 q2 = 0.562 = 0.313 2pq = 2 x 0.44 x 0.56 = 0.493 5. Fill in the table below using your answers from Questions 2 and 4. Genotype Expected Frequency Observed Frequency DD 0.194 0.298 Dd 0.313 0.275 dd 0.493 0.427 a. Are the observed and expected genotypic frequencies the same or different? What does this suggest about the population? The observed and expected frequencies are different. This means that the HW equilibrium is not upheld implying the population is evolving and that one of the assumptions of HW is being broken. b. Which frequencies appear to be the most different? The heterozygote frequency and homozygote dominant frequencies appear to be the most different 6. In Arizona, where this population occurs, there are areas that contain light rocks and those that contain dark rocks. Explain how this information and Figure 2 relate to your answer in Question 5. (hint: what assumption of HW might be violated in this population?) Could this information help explain why some frequencies are more different than others? Figure 2 shows that light mice and dark mice are not well camouflaged on dark and light rocks, respectively. Natural selection could be acting on the alleles by predation. Heterozygotes could be less abundant because emigration is selected against. Figure 2 – Dark and light morphs on light (left) and dark (right) rock types.