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Supplementary Material for
The importance of structural complexity in coral reef
ecosystems
N. A. J. Graham and K. L. Nash
File includes:
Tables S1-S4
References
Table S1 Correlation coefficients of percent algal cover (turf & macroalgae) against structural
complexity for individual source studies. Significant correlations are displayed in bold.
Study
n*
Location
Dulvy et al. 2002
Garpe & Ohman 2003
Howard et al. 2009
Lawson et al. 1999
McClanahan & Shafir 1990
McClanahan 1999
5
5
3
3
6
3
Fiji
Tanzania
Hawaii
Barbados
Kenya
Belize
Spearman Rank
Correlation (rs)
0.60
-0.10
n/a
n/a
-0.60
n/a
Footnote: *Number of sites used to calculate correlation coefficient.
P
NS
NS
n/a
n/a
NS
n/a
Table S2 Correlation coefficients of percent live coral cover and branching coral cover against
structural complexity for individual source studies. Significant correlations are displayed in bold.
Study
Coral Cover
Bergman et al. 2000
Dulvy et al. 2002
Friedlander et al. 2003
Garpe & Ohman 2003
Grigg 1994
Idjadi & Edmunds 2006
Kamukuru et al. 2004
Mangi & Roberts 2007
McClanahan & Shafir 1990
McClanahan 1999
Miller & Gerstner 2002
Mumby & Wabnitz 2002
Wolff et al. 1999
Branching Cover
Bergman et al. 2000
Friedlander et al. 2003
Garpe & Ohman 2003
n*
Location
Spearman
Rank
Correlation
(rs)
P
11
5
4
11
8
14
3
10
5
3
1
3
2
Zanzibar
Fiji
Hawaii
Tanzania
Hawaii
US Virgin Islands
Tanzania
Kenya
Kenya
Belize
Navassa (USA)
Belize
US Virgin Islands
0.75
-0.20
n/a
0.28
0.32
0.39
n/a
0.79
0.90¥
n/a
n/a
n/a
n/a
0.008
NS
n/a
NS
NS
NS
n/a
0.007
0.037
n/a
n/a
n/a
n/a
11
4
11
Zanzibar
Hawaii
Tanzania
0.69
0.40
0.16
0.019
NS
NS
Footnote: *Number of sites used to calculate correlation coefficient. ¥ Relationship between
structural complexity and fish variables calculated using data incorporated in our analysis.
Relationship between variables also presented in source publication. Correlation in
McClanahan & Shafir (1990) was slightly weaker than the relationship calculated in our study
and presented here. Our analysis is based on fewer sites to prevent overlap with data from
Mangi & Roberts (2007), and untransformed coral cover data were used.
Table S3 Correlation coefficients of urchin density (10m-2) against structural complexity for
individual source studies. Significant correlations are displayed in bold.
Study
n*
Location
Dulvy et al. 2002
Mangi & Roberts 2007
McClanahan & Shafir 1990
5
10
5
Fiji
Kenya
Kenya
Spearman Rank
Correlation (rs)
0.15
0.00
-0.70¥
P
NS
NS
NS
Footnote: *Number of sites used to calculate correlation coefficient. ¥ Relationship between structural
complexity and fish variables calculated using data incorporated in our analysis. Relationship
between variables also presented in source publication. Correlation in McClanahan & Shafir (1990)
was significant; the relationship calculated in our study and presented here, is based on fewer sites to
prevent overlap with data from Mangi & Roberts (2007).
Table S4 Correlation coefficients of fish density (no. m-2) and fish biomass (kg/ha) against structural
complexity within individual studies. Significant correlations are displayed in bold.
Study
Fish Density
Friedlander et al. 2003†
Garpe & Ohman 2003‡
Grigg 1994†?
Luckhurst & Luckhurst 1978•
Mangi & Roberts 2007†?
McClanahan & Shafir 1990†?
Miller & Gerstner 2002†?
Risk 1972•
Fish Biomass
Cinner et al. 2009†#
Dulvy et al. 2002†§
Freidlander et al. 2007†?
Grigg 1994†?
Miller & Gerstner 2002†?
n*
Location
Spearman
Rank
Correlation
(rs)
P
4
11
12
8
10
5
1
1
Hawaii
Tanzania
Hawaii
Bonaire & Curacao
Kenya
Kenya
Navassa (USA)
US Virgin Islands
n/a
0.25
0.89
0.90¥
-0.02
1
n/a
n/a
n/a
NS
<0.001
0.002
NS
<0.001
n/a
n/a
16
5
22
12
1
Indian Ocean
Fiji
Hawaii
Hawaii
Navassa (USA)
0.59¥
0.3
0.71¥
0.81¥
n/a
0.016
NS
<0.001
0.001
n/a
Footnote: *Number of sites used to calculate correlation coefficient. †Diurnally active, non-cryptic
species. ‡Including some cryptic species. •Cryptic and non-cryptic site attached species. #Fish
greater than 10cm in length. §Fish greater than 8cm in length. ¥Relationship between structural
complexity and fish variables calculated using data incorporated in our analysis. Relationship
between variables also presented in source publication. Data sourced from Luckhurst & Luckhurst
(1978) was analysed in a different manner to our study where we averaged within depths, therefore
the magnitude of the significant positive correlation between structural complexity and fish density is
greater to that presented in source publication. Significant positive correlation between fish biomass
and structural complexity presented in Grigg (1994) is slightly weaker than the relationship calculated
in our study and presented here. Our analysis was based on fewer sites to prevent overlap with data
from Friedlander et al. (2007).
References
Literature examining the role of structural complexity in coral reef ecosystems, categorised
into the classifications used in the qualitative analysis according to the focus of the original
paper. Note that the number of papers in the categories below may vary compared to the
number reported in the qualitative and quantitative analyses in the main paper for two
reasons: 1) Some papers assessed multiple aspects of the reef community or multiple
ecosystem services, and are thus in the ‘other’ category below and 2) In some of the papers
the relationship we extracted (e.g., structural complexity against algal cover) was not the
focus of the original paper, however we were able to extract the data to analyse the data for
this purpose. Articles in bold were used in the quantitative analyses.
Algae
Adey WH, Steneck RS (1985) Highly productive eastern caribbean reefs: synergystic effects
of biological, chemical, physical, and geological factors. NOAA Undersea Research
Program Symposium Series 3
Coral
Aronson RB, Precht WF (1995) Landscape patterns of reef coral diversity: A test of the
intermediate disturbance hypothesis. J Exp Mar Biol Ecol 192:1-14
Carleton JH, Sammarco PW (1987) Effects of substratum irregularity on success of coral
settlement: quantification by comparative geomorphological techniques. Bull Mar Sci
40:85-98
Crabbe MJC (2010) Topography and spatial arrangement of reef-building corals on the
fringing reefs of North Jamaica may influence their response to disturbance from
bleaching. Mar Environ Res 69:158-162
Epstein N, Rinkevich B (2001) From isolated ramets to coral colonies:The significance of
colony pattern formation in reef restoration practices. Basic and Applied Ecology 2:219222
Jokiel PL, Brown EK, Friedlander A, Rodgers SK, Smith WR (2004) Hawaii Coral Reef
Assessment and Monitoring Program: Spatial patterns and temporal dynamics in reef
coral communities. Pac Sci 58:159-174
Vermeij MJA, Bak RPM (2002) How are coral populations structured by light? Marine light
regimes and the distribution of Madracis. Mar Ecol-Prog Ser 233:105-116
Zilberberg C, Edmunds PJ (2001) Competition among small colonies of Agaricia: the
importance of size asymmetry in determining competitive outcome. Mar Ecol-Prog Ser
221:125-133
Coral-Algae Interactions – Reviews & Hypotheses
McManus JW, Polsenberg JF (2004) Coral-algal phase shifts on coral reefs: Ecological and
environmental aspects. Prog Oceanogr 60:263-279
Nystrom M, Folke C (2001) Spatial resilience of coral reefs. Ecosystems 4:406-417
Szmant AM (1997) Nutrient effects on coral reefs: A hypothesis on the importance of
topographic and trophic complexity to reef nutrient dynamics. 8th Int Coral Reef Symp
2:1527-1532
Fishes
Almany GR (2004) Differential effects of habitat complexity, predators and competitors on
abundance of juvenile and adult coral reef fishes. Oecologia 141:105-113
Almany GR (2004) Does increased habitat complexity reduce predation and competition in
coral reef fish assemblages? Oikos 106:275-284
Arias-Gonzalez JE, Done TJ, Page CA, Cheal AJ, Kininmonth S, Garza-Perez JR (2006)
Towards a reefscape ecology: Relating biomass and trophic structure of fish assemblages
to habitat at Davies Reef, Australia. Mar Ecol Prog Ser 320:29-41
Bell JD, Galzin R (1984) Influence of live coral cover on coral-reef fish communities. Mar
Ecol Prog Ser 15:265-274
Benfield S, Baxter L, Guzman HM, Mair JM (2008) A comparison of coral reef and coral
community fish assemblages in Pacific Panama and environmental factors governing
their structure. J Mar Biol Assoc U K 88:1331-1341
Bergman KC, Ohman MC, Svensson S (2000) Influence of habitat structure on
Pomacentrus sulfureus, a western Indian Ocean reef fish. Environ Biol Fish 59:243252
Beukers JS, Jones GP (1998) Habitat complexity modifies the impact of piscivores on a coral
reef fish population. Oecologia 114:50-59
Bonin MC, Srinivasan M, Almany GR, Jones GP (2009) Interactive effects of interspecific
competition and microhabitat on early post-settlement survival in a coral reef fish. Coral
Reefs 28:265-274
Bozec YM, Doledec S, Kulbicki M (2005) An analysis of fish-habitat associations on
disturbed coral reefs: chaetodontid fishes in New Caledonia. J Fish Biol 66:966-982
Brokovich E, Baranes A, Goren M (2006) Habitat structure determines coral reef fish
assemblages at the northern tip of the Red Sea. Ecol Indicators 6:494-507
Brooks AJ, Holbrook SJ, Schmitt RJ (2007) Patterns of microhabitat use by fishes in the
patch-forming coral Porites rus. Raffles B Zool 14:245-254
Cabaitan PC, Gomez ED, Alino PM (2008) Effects of coral transplantation and giant clam
restocking on the structure of fish communities on degraded patch reefs. J Exp Mar Biol
Ecol 357:85-98
Cadoret L, Adjeroud M, Tsuchiya M (1999) Spatial distribution of chaetodontid fish in coral
reefs of the Ryukyu Islands, southern Japan. J Mar Biol Assoc U K 79:725-735
Caley MJ, St John J (1996) Refuge availability structures assemblages of tropical reef fishes.
J Anim Ecol 65:414-428
Carpenter KE, Miclat RI, Albaladejo VD, Corpuz VT (1982) The influence of substrate
structure on the local abundance and diversity of Philippine reef fishes. 4th Int Coral
Reef Symp 2:497-502
Carr MH, Hixon MA (1997) Artificial reefs: The importance of comparisons with natural
reefs. Fisheries 22:28-33
Chapman MR, Kramer DL (1999) Gradients in coral reef fish density and size across the
Barbados Marine Reserve boundary: effects of reserve protection and habitat
characteristics. Mar Ecol Prog Ser 181:81-96
Chittaro PM (2004) Fish-habitat associations across multiple spatial scales. Coral Reefs
23:235-244
Cinner JE, McClanahan TR, Daw TM, Graham NAJ, Maina J, Wilson SK, Hughes TP
(2009) Linking social and ecological systems to sustain coral reef fisheries. Curr
Biol 19:206-212
Clark S, Edwards AJ (1994) Use of artificial reef structures to rehabilitate reef flats degraded
by coral mining in the Maldives. Bull Mar Sci 55:724-744
Crook AC (1997) Colour patterns in a coral reef fish - is background complexity important? J
Exp Mar Biol Ecol 217:237-252
DeMartini EE, Anderson TW (2007) Habitat associations and aggregation of recruit fishes on
Hawaiian coral reefs. Bull Mar Sci 81:139-152
DeMartini EE, Zgliczynski BJ, Boland RC, Friedlander AM (2009) Influences of wind-wave
exposure on the distribution and density of recruit reef fishes at Kure and Pearl and
Hermes Atolls, Northwestern Hawaiian Islands. Environ Biol Fish 85:319-332
Dominici-Arosemena A, Wolff M (2005) Reef fish community structure in Bocas del Toro
(Caribbean, Panama): Gradients in habitat complexity and exposure. Caribb J Sci
41:613-637
Dominici-Arosemena A, Wolff M (2006) Reef fish community structure in the Tropical
Eastern Pacific (Panama):Living on a relatively stable rocky reef environment.
Helgoland Mar Res 60:287-305
Emslie MJ, Cheal AJ, Sweatman H, Delean S (2008) Recovery from disturbance of coral and
reef fish communities on the Great Barrier Reef, Australia. Mar Ecol Prog Ser 371:177190
Espinoza M, Salas E (2005) Structure of reef fish communities in Catalinas Islands and
Ocotal beach, north Pacific of Costa Rica. Rev Biol Trop 53:523-536
Figueira WF, Lyman SJ, Crowder LB, Rilov G (2008) Small-scale demographic variability of
the biocolor damselfish, Stegastes partitus, in the Florida Keys USA. Environ Biol Fish
81:297-311
Friedlander AM, Parrish JD (1998) Habitat characteristics affecting fish assemblages on a
Hawaiian coral reef. J Exp Mar Biol Ecol 224:1-30
Friedlander AM, Parrish JD (1998) Temporal dynamics of fish communities on an exposed
shoreline in Hawaii. Environ Biol Fish 53:1-18
Friedlander AM, Brown EK, Monaco ME (2007) Defining reef fish habitat utilization
patterns in Hawaii: comparisons between marine protected areas and areas open to
fishing. Mar Ecol Prog Ser 351:221-233
Friedlander AM, Brown EK, Jokiel PL, Smith WR, Rodgers KS (2003) Effects of
habitat, wave exposure, and marine protected area status on coral reef fish
assemblages in the Hawaiian archipelago. Coral Reefs 22:291-305
Garpe KC, Ohman MC (2003) Coral and fish distribution patterns in Mafia Island
Marine Park, Tanzania: Fish-habitat interactions. Hydrobiologia 498:191-211
Garpe KC, Yahya SAS, Lindahl U, Ohman MC (2006) Long-term effects of the 1998 coral
bleaching event on reef fish assemblages. Mar Ecol Prog Ser 315:237-247
Giraldo A, Gomez C, Ospina F (2001) Abundance and spatial distribution of Thalassoma
lucasanum (Gill, 1863) in a coral reef of the eastern tropical Pacific. Bull Mar Sci
68:147-152
Gladstone W (2007) Selection of a spawning aggregation site by Chromis hypsilepis (Pisces :
Pomacentridae): habitat structure, transport potential, and food availability. Mar Ecol
Prog Ser 351:235-247
Graham NAJ, Evans RD, Russ GR (2003) The effects of marine reserve protection on the
trophic relationships of reef fishes on the Great Barrier Reef. Environ Conserv 30:200208
Graham NAJ, Wilson SK, Pratchett MS, Polunin NVC, Spalding MD (2009) Coral mortality
versus structural collapse as drivers of corallivorous butterflyfish decline. Biodivers
Conserv 18:3325-3336
Graham NAJ, Wilson SK, Jennings S, Polunin NVC, Bijoux JP, Robinson J (2006) Dynamic
fragility of oceanic coral reef ecosystems. Proc Natl Acad Sci U S A 103:8425-8429
Graham NAJ, Wilson SK, Jennings S, Polunin NVC, Robinson J, Bijoux JP, Daw TM (2007)
Lag effects in the impacts of mass coral bleaching on coral reef fish, fisheries, and
ecosystems. Conserv Biol 21:1291-1300
Gratwicke B, Speight MR (2005) The relationship between fish species richness, abundance
and habitat complexity in a range of shallow tropical marine habitats. J Fish Biol 66:650667
Gratwicke B, Speight MR (2005) Effects of habitat complexity on Caribbean marine fish
assemblages. Mar Ecol Prog Ser 292:301-310
Green AL (1996) Spatial, temporal and ontogenetic patterns of habitat use by coral reef fishes
(Family Labridae). Mar Ecol Prog Ser 133:1-11
Grigg RW (1994) Effects of sewage discharge, fishing pressure and habitat complexity
on coral ecosystems and reef fishes in Hawaii. Mar Ecol Prog Ser 103:25-34
Hawkins JP, Roberts CM, Dytham C, Schelten C, Nugues MM (2006) Effects of habitat
characteristics and sedimentation on performance of marine reserves in St. Lucia. Biol
Conserv 127:487-499
Holbrook SJ, Brooks AJ, Schmitt RJ (2002) Variation in structural attributes of patchforming corals and in patterns of abundance of associated fishes. Mar Freshw Res
53:1045-1053
Howard KG, Schumacher BD, Parrish JD (2009) Community structure and habitat
associations of parrotfishes on Oahu, Hawaii. Environ Biol Fish 85:175-186
Jennings S, Boulle DP, Polunin NVC (1996) Habitat correlates of the distribution and
biomass of Seychelles' reef fishes. Environ Biol Fish 46:15-25
Johnson C, Klumpp D, Field J, Bradbury R (1995) Carbon flux on coral reefs: effects of large
shifts in community structure. Mar Ecol Prog Ser 126:123-143
Kamukuru AT, Mgaya YD, Ohman MC (2004) Evaluating a marine protected area in a
developing country: Mafia Island Marine Park, Tanzania. Ocean Coastal Manage
47:321-337
Kawasaki H, Sano M, Shibuno T (2003) The relationship between habitat physical
complexity and recruitment of the coral reef damselfish, Pomacentrus amboinensis: an
experimental study using small-scale artificial reefs. Ichthyol Res 50:73-77
Kuffner IB, Brock JC, Grober-Dunsmore R, Bonito VE, Hickey TD, Wright CW (2007)
Relationships between reef fish communities and remotely sensed rugosity
measurements in Biscayne National Park, Florida, USA. Environ Biol Fish 78:71-82
Lavett Smith C, Tyler JC (1975) Succession and stability in fish communities of domeshaped patch reefs in the West Indies. American Museum Novitates 2572:1-18
Lawson GL, Kramer DL, Hunte W (1999) Size-related habitat use and schooling
behavior in two species of surgeonfish (Acanthurus bahianus and A. coeruleus) on a
fringing reef in Barbados, West Indies. Environ Biol Fish 54:19-33
Lindahl U, Ohman MC, Schelten CK (2001) The 1997/1998 mass mortality of corals: Effects
on fish communities on a Tanzanian coral reef. Mar Pollut Bull 42:127-131
Lingo ME, Szedlmayer ST (2006) The influence of habitat complexity on reef fish
communities in the northeastern Gulf of Mexico. Environ Biol Fish 76:71-80
Lirman D (1999) Reef fish communities associated with Acropora palmata: Relationships to
benthic attributes. Bull Mar Sci 65:235-252
Luckhurst BE, Luckhurst K (1978) Analysis of influence of substrate variables on coralreef fish communities. Mar Biol 49:317-323
McClanahan TR (1994) Kenyan coral-reef lagoon fish: effects of fishing, substrate
complexity, and sea-urchins. Coral Reefs 13:231-241
McCormick MI (1994) Comparison of field methods for measuring surface-topography and
their associations with a tropical reef fish assemblage. Mar Ecol Prog Ser 112:87-96
Mellin C, Andrefouet S, Ponton D (2007) Spatial predictability of juvenile fish species
richness and abundance in a coral reef environment. Coral Reefs 26:895-907
Menard A, Turgeon K, Kramer DL (2008) Selection of diurnal refuges by the nocturnal
squirrelfish, Holocentrus rufus. Environ Biol Fish 82:59-70
Monaco ME, Friedlander AM, Caldow C, Christensen JD, Rogers C, Beets J, Miller J,
Boulon R (2007) Characterising reef fish populations and habitats within and outside the
US Virgin Islands Coral Reef National Monument: A lesson in marine protected area
design. Fisheries Manag Ecol 14:33-40
Mumby PJ, Wabnitz CCC (2002) Spatial patterns of aggression, territory size, and
harem size in five sympatric Caribbean parrotfish species. Environ Biol Fish
63:265-279
Nagelkerken I, Vermonden K, Moraes OCC, Debrot AO, Nagelkerken WP (2005) Changes
in coral reef communities and an associated reef fish species, Cephalopholis cruentata
(Lacepede), after 30 years on Curacao (Netherlands Antilles). Hydrobiologia 549:145154
Nanami A, Yamada H (2009) Seasonality, lunar periodicity of settlement and microhabitat
association of juvenile humpback red snapper Lutjanus gibbus (Lutjanidae) in an
Okinawan coral reef. Mar Biol 156:407-414
Nanami A, Nishihira M, Suzuki T, Yokochi H (2005) Species-specific habitat distribution of
coral reef fish assemblages in relation to habitat characteristics in an Okinawan coral
reef. Environ Biol Fish 72:55-65
Nemeth RS (1998) The effect of natural variation in substrate architecture on the survival of
juvenile bicolor damselfish. Environ Biol Fish 53:129-141
Nuñez-Lara E, Arias-Gonzales JE (1998) Composición, biomasa y estructura de la
comunidad de peces arrecifales en tres áreas del sur del Caribe mexicano. 50th Gulf
Caribbean Fisheries Institute. 1003-1021
Ohman MC, Rajasuriya A (1998) Relationships between habitat structure and fish
communities on coral and sandstone reefs. Environ Biol Fish 53:19-31
Ohman MC, Rajasuriya A, Svensson S (1998) The use of butterflyfishes (Chaetodontidae) as
bio-indicators of habitat structure and human disturbance. Ambio 27:708-716
Piko AA, Szedlmayer ST (2007) Effects of habitat complexity and predator exclusion on the
abundance of juvenile red snapper. J Fish Biol 70:758-769
Pittman SJ, Christensen JD, Caldow C, Menza C, Monaco ME (2007) Predictive mapping of
fish species richness across shallow-water seascapes in the Caribbean. Ecol Model
204:9-21
Purkis SJ, Graham NAJ, Riegl BM (2008) Predictability of reef fish diversity and abundance
using remote sensing data in Diego Garcia (Chagos Archipelago). Coral Reefs 27:167178
Retzel A, Hansen AD, Gronkjaer P (2007) Otolith growth of Springer's demoiselle,
Chrysiptera springeri (Pomacentridae, Allen & Lubbock), on a protected and nonprotected coral reef. J Appl Ichthyol 23:568-572
Riegl B (2002) Effects of the 1996 and 1998 positive sea-surface temperature anomalies on
corals, coral diseases and fish in the Arabian Gulf (Dubai, UAE). Mar Biol 140:29-40
Rilov G, Figueira WF, Lyman SJ, Crowder LB (2007) Complex habitats may not always
benefit prey: linking visual field with reef fish behavior and distribution. Mar Ecol Prog
Ser 329:225-238
Risk MJ (1972) Fish diversity on a coral reef in the Virgin Islands. Atoll Res Bull 153:17
Roberts CM, Ormond RFG (1987) Habitat complexity and coral-reef fish diversity and
abundance on red-sea fringing reefs. Mar Ecol Prog Ser 41:1-8
Sale PF, Douglas WA, Doherty PJ (1984) Choice of microhabitats by coral reef fishes at
settlement. Coral Reefs 3:91-99
Sano M (2004) Short-term effects of a mass coral bleaching event on a reef fish assemblage
at Iriomote Island, Japan. Fish Sci 70:41-46
Sano M, Shimizu M, Nose Y (1984) Changes in structure of coral-reef fish communities by
destruction of hermatypic corals- observational and experimental views. Pac Sci 38:5179
Sherman RL, Gillian DS, Spieler RE (2002) Artificial reef design: void space, complexity,
and attractants. ICES J Mar Sci 59:S196-S200
Syms C, Jones GP (2000) Disturbance, habitat structure, and the dynamics of a coral-reef fish
community. Ecology 81:2714-2729
Walker BK, Jordan LKB, Spieler RE (2009) Relationship of reef fish assemblages and
topographic complexity on southeastern Florida coral reef habitats. J Coastal Res 53:3948
Wedding LM, Friedlander AM, McGranaghan M, Yost RS, Monaco ME (2008) Using
bathymetric lidar to define nearshore benthic habitat complexity: Implications for
management of reef fish assemblages in Hawaii. Remote Sens Environ 112:4159-4165
White AT (1988) Chaetodon occurrence relative to coral reef habitats in the Philippines with
implications for reef assessment. 6th Int Coral Reef Symp 2:427-432
Wilson SK, Dolman AM, Cheal AJ, Emslie MJ, Pratchett MS, Sweatman HPA (2009)
Maintenance of fish diversity on disturbed coral reefs. Coral Reefs 28:3-14
Wilson SK, Fisher R, Pratchett MS, Graham NAJ, Dulvy NK, Turner RA, Cakacaka A,
Polunin NVC, Rushton SP (2008) Exploitation and habitat degradation as agents of
change within coral reef fish communities. Global Change Biol 14:2796-2809
Wolff N, Grober-Dunsmore R, Rogers CS, Beets J (1999) Management implications of
fish trap effectiveness in adjacent coral reef and gorgonian habitats. Environ Biol
Fish 55:81-90
Fishes – Reviews & Models
Garcia-Charton JA, Perez-Ruzafa A (1999) Ecological heterogeneity and the evaluation of
the effects of marine reserves. Fish Res 42:1-20
Jones GP, Syms C (1998) Disturbance, habitat structure and the ecology of fishes on coral
reefs. Aust J Ecol 23:287-297
McClanahan TR (1995) A coral-reef ecosystem-fisheries model - impacts of fishing intensity
and catch selection on reef structure and processes. Ecol Model 80:1-19
Sale PF (1991) Habitat structure and recruitment in coral reef fishes. In: Bell SS, McCoy ED,
Mushinsky HR (eds) Habitat structure: the physical arrangement of objects in space,
pp197-210
Wilson SK, Graham NAJ, Pratchett MS, Jones GP, Polunin NVC (2006) Multiple
disturbances and the global degradation of coral reefs: are reef fishes at risk or resilient?
Global Change Biol 12:2220-2234
Invertebrates
Bartholomew A, Shine RL (2008) Space size relative to prey width (Sp/Py) influences
macrofaunal colonization of artificial structures. Mar Ecol Prog Ser 358:95-102
Briones-Fourzán P, Lozano-Álvarez E (2001) Effects of artificial shelters (Casitas) on the
abundance and biomass of juvenile spiny lobsters Panulirus argus in a habitat-limited
tropical reef lagoon. Mar Ecol Prog Ser 221:221-232
De Troch M, Raes M, Muthumbi A, Gheerardyn H, Vanreusel A (2008) Spatial diversity of
nematode and copepod genera of the coral degradation zone along the Kenyan coast,
including a test for the use of higher-taxon surrogacy. Afr J Mar Sci 30:25-33
Dulvy NK, Mitchell RE, Watson D, Sweeting CJ, Polunin NVC (2002) Scale-dependant
control of motile epifaunal community structure along a coral reef fishing gradient.
J Exp Mar Biol Ecol 278:1-29
Dumas P, Kulbicki M, Chifflet S, Fichez R, Ferraris J (2007) Environmental factors
influencing urchin spatial distributions on disturbed coral reefs (New Caledonia, South
Pacific). J Exp Mar Biol Ecol 344:88-100
Gheerardyn H, De Troch M, Ndaro SGM, Raes M, Vincx M, Vanreusel A (2008)
Community structure and microhabitat preferences of harpacticoid copepods in a tropical
reef lagoon (Zanzibar Island, Tanzania). J Mar Biol Assoc U K 88:747-758
Idjadi JA, Edmunds PJ (2006) Scleractinian corals as facilitators for other invertebrates
on a Caribbean reef. Mar Ecol Prog Ser 319:117-127
Kohn AJ (1967) Environmental complexity and species diversity in the gastropod genus
Conus on Indo-West Pacific reef platforms. Am Nat 101:251-259
McClanahan TR (1998) Predation and the distribution and abundance of tropical sea urchin
populations. J Exp Mar Biol Ecol 221:231-255
Moran DP, Reaka ML (1988) Bioerosion and availability of shelter for benthic reef
organisms. Mar Ecol Prog Ser 44:249-263
Rios-Lara V, Salas S, Javier BP, Irene-Ayora P (2007) Distribution patterns of spiny lobster
(Panulirus argus) at Alacranes reef, Yucatan: Spatial analysis and inference of
preferential habitat. Fish Res 87:35-45
Weil E, Torres JL, Ashton M (2005) Population characteristics of the sea urchin Diadema
antillarum in La Parguera, Puerto Rico, 17 years after the mass mortality event. Rev Biol
Trop 53:219-231
Shoreline Protection
Aubanel A, Marquet N, Colombani JM, Salvat B (1999) Modifications of the shore line in the
Society islands (French Polynesia). Ocean Coastal Manag 42:419-438
Baird AH, Campbell SJ, Anggoro AW, Ardiwijaya RL, Fadli N, Herdiana Y, Kartawijaya T,
Mahyiddin D, Mukminin A, Pardede ST, Pratchett MS, Rudi E, Siregar AM (2005)
Acehnese Reefs in the wake of the asian tsunami. Curr Biol 15:1926-1930
Brander RW, Kench PS, Hart D (2004) Spatial and temporal variations in wave
characteristics across a reef platform, Warraber Island, Torres Strait, Australia. Mar Geol
207:169-184
Chandramohan P, Anand NM, Nayak BU (1993) Shoreline dynamics of the Lakshadweep
Islands. Indian J Mar Sci 22:198-202
Chatenoux B, Peduzzi P (2007) Impacts from the 2004 Indian Ocean Tsunami: Analysing the
potential protecting role of environmental features. Natural Hazards 40:289-304
Frihy OE, El Ganaini MA, El Sayed WR, Iskander MM (2004) The role of fringing coral reef
in beach protection of Hurghada, Gulf of Suez, Red Sea of Egypt. Ecol Engin 22:17-25
Hardy TA, Young IR (1996) Field study of wave attenuation on an offshore coral reef. J
Geophys Res 101:14311-14326
Kench PS, Brander RW (2006) Wave processes on coral reef flats: Implications for reef
geomorphology using australian case studies. J Coastal Res 22:209-223
Mimura N, Nunn PD (1998) Trends of beach erosion and shoreline protection in rural Fiji. J
Coastal Res 14:37-46
Nunn PD (2000) Coastal changes over the past 200 years around Ovalau and Moturiki
Islands, Fiji: implications for coastal zone management. Aust Geogr 31:21-39
Ramanujam N, Sudarsan R (2003) A study of coastal transformation at Tuticorin as a result
of emerged and submerged natural breakwaters of Van Island, Gulf of Mannar. Environ
Geol 43:521-525
Young IR, Hardy TA (1993) Measurement and modelling of tropical cyclone waves in the
Great Barrier Reef. Coral Reefs 12:85-95
Shoreline Protection – Reviews & Models
Cesar H (1996) Economic analysis of Indonesian coral reefs. Environment Department,
World Bank 97
Cochard R, Ranamukhaarachchi SL, Shivakoti GP, Shipin OV, Edwards PJ, Seeland KT
(2008) The 2004 tsunami in Aceh and Southern Thailand: A review on coastal
ecosystems, wave hazards and vulnerability. Perspect Plant Ecol Evol Syst10:3-40
Costanza R, d'Arge R, de Groot R, Farber S, Grasso M, Hannon B, Limburg K, Naeem S,
O'Neill RV, Paruelo J, Raskin RG, Sutton P, van den Belt M (1997) The value of the
world's ecosystem services and natural capital. Nature 387:253-260
Frihy OE, Hassan AN, El Sayed WR, Iskander MM, Sherif MY (2006) A review of methods
for constructing coastal recreational facilities in Egypt (Red Sea). Ecol Engin 27:1-12
Kunkel M, Hallberg RW, M. O (2006) Coral reefs reduce tsunami impact in model
simulations. Geophys Res Lett 33:L23612
Reaser JK, Pomerance R, Thomas PO (2000) Coral bleaching and global climate change:
Scientitic findings and policy recommendations. Conserv Biol 14:1500-1511
Tourism
Uyarra M, Watkinson A, Cote IM (2009) Managing Dive Tourism for the Sustainable Use of
Coral Reefs: Validating Diver Perceptions of Attractive Site Features. Environ Manag
43:1-16
Williams ID, Polunin NVC (2000) Differences between protected and unprotected reefs of
the western Caribbean in attributes preferred by dive tourists. Environ Conserv 27:382391
Other (Papers covering multiple response variables)
Abelson A, Shlesinger Y (2002) Comparison of the development of coral and fish
communities on rock-aggregated artificial reefs in Eilat, Red Sea. ICES J Mar Sci
59:S122-S126
Atkinson MJ (1999) Topographical relief as a proxy for the friction factors of reefs: estimates
of nutrient uptake into coral reef benthos. Hawaii Coral Reef Monitoring Workshop,
pp99–103
Brock RE (1979) An experimental study on the effects of grazing by parrotfishes and role of
refuges in benthic community structure. Mar Biol 51:381-388
Fraser SB, Sedberry GR (2008) Reef morphology and invertebrate distribution at continental
shelf edge reefs in the South Atlantic Bight. Southeastern Naturalist 7:191-206
Lee SC (2006) Habitat complexity and consumer-mediated positive feedbacks on a
Caribbean coral reef. Oikos 112:442-447
Lowe RJ, Falter JL, Bandet MD, Pawlak G, Atkinson MJ, Monismith SG, Koseff JR (2005)
Spectral wave dissipation over a barrier reef. J Geophy Res 110: C04001
Mangi SC, Roberts CM (2007) Factors influencing fish catch levels on Kenya's coral
reefs. Fish Manag Ecol 14:245-253
McClanahan TR (1999) Predation and the control of the sea urchin Echinometra viridis
and fleshy algae in the patch reefs of Glovers Reef, Belize. Ecosystems 2:511-523
McClanahan TR, Shafir SH (1990) Causes and consequences of sea urchin abundance
and diversity in Kenyan coral reef lagoons. Oecologia 83:362-370
McClanahan TR, Kurtis JD (1991) Population regulation of the rock-boring sea-urchin
Echinometra mathaei (Deblainville). J Exp Mar Biol Ecol 147:121-146
Medeiros P, Grempel R, Souza A, Ilarri M, Rosa R (2010) Non-random reef use by fishes at
two dominant zones in a tropical, algal-dominated coastal reef. Environ Biol Fish
87:237-246
Menge BA, Lubchenco J (1981) Community organization in temperate and tropical rocky
intertidal habitats: Prey refuges in relation to consumer pressure gradients. Ecol Monogr
51:429-450
Miller MW, Gerstner CL (2002) Reefs of an uninhabited Caribbean island: fishes,
benthic habitat, and opportunities to discern reef fishery impact. Biol Conserv
106:37-44
Pittman SJ, Costa BM, Battista TA (2009) Using LIDAR bathymetry and boosted regression
trees to predict the diversity and abundance of fish and corals. J Coastal Res SI(53):2738
Sheppard C, Dixon DJ, Gourlay M, Sheppard A, Payet R (2005) Coral mortality increases
wave energy reaching shores protected by reef flats: Examples from the Seychelles.
Estuar Coast Shelf Sci 64:223-234
Vytopil E, Willis BL (2001) Epifaunal community structure in Acropora spp. (Scleractinia)
on the Great Barrier Reef: implications of coral morphology and habitat complexity.
Coral Reefs 20:281-288
Walter RP, Haynes JM (2006) Fish and coral community structure are related on shallow
water patch reefs near San Salvador, Bahamas. Bull Mar Sci 79:365-374
Wilson SK, Graham NAJ, Polunin NVC (2007) Appraisal of visual assessments of habitat
complexity and benthic composition on coral reefs. Mar Biol 151:1069-1076
Other – Reviews
Caddy JF (2008) The importance of "Cover" in the life histories of demersal and benthic
marine resources: A neglected issue in fisheries assessment and management. Bull Mar
Sci 83:7-52
Monismith SG (2007) Hydrodynamics of coral reefs. Annu Rev Fluid Mech 39:37-55
Munday PL, Jones GP, Pratchett MS, Williams AJ (2008) Climate change and the future for
coral reef fishes. Fish Fish 9:261-285
Sebens KP (1991) Habitat structure and community dynamics in marine benthic systems. In:
Bell SS, McCoy ED, Mushinsky HR (eds) Habitat structure: the physical arrangement of
objects in space, Springer, pp211-234
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