Supplementary Information, Table S2 (doc 529K)

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Table S2. Reported hERG inhibitors were validated by automated patch clamp-IonWorks QuattroTM
No.
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
Compound name
Ajmaline
Apomorphine
Astemizole
Atomoxetine
Bepridil
Benperidol
Buspirone
Carvedilol
Cetirizine
(±)-Chlorpheniramine
maleate
Chlorpheniramine
Chlorpromazine
Cisapride
Citalopram
Clofilium tosylate
Clomipramine
Clotrimazole
Clozapine
Cocaine
Desipramine
Diazepam
23760133
11957529
2247
54840
50088
16363
36431
2585
1549000
5281068
56463108
46500370
855746
49681605
56322751
56463215
11533010
49681735
49681558
49681628
1μM
(%)
-33.4
-24.6
-103.4
-29.7
-55.4
-101.1
-30.8
-35.0
-8.5
-11.4
5281068
6240
5311047
146571
175533
68539
2812
2818
517282
65327
1688
56422503
56422870
56463519
49681820
56463363
855785
11532882
56422144
24824088
26732610
855615
-25.8
-14.8
-104.6
-25.3
-105.2
-15.2
-10.9
-8.4
-23.8
-10.0
-21.2
CID
SID
10μM
(%)
-73.8
-88.8
-106.2
-66.6
-102.7
-103.0
-65.9
-95.6
-26.2
-57.2
IC50(μM )
5.47
3.11
0.05
8.19
1.04
0.17
6.25
1.14
37.20
9.77
log10(IC50)
-5.3
-5.5
-7.3
-5.1
-6.0
-5.2
-5.9
-4.4
-5.0
Reported
IC50(μM)
1.00
2.40
0.02
6.30
0.55
0.004
3.98
10.4
30.2
19.0
-61.1
-72.2
-106.7
-79.9
-106.7
-58.3
-40.4
-40.3
-55.9
-32.7
-63.8
8.13
5.15
0.02
3.73
0.02
9.04
18.77
19.63
16.70
28.05
7.40
-5.1
-5.3
-7.7
-5.4
-7.7
-5.0
-4.7
-4.7
-4.8
-4.6
-5.1
19.0
1.56
0.018
3.97
0.15
3.98
3.60
2.50
7.24
28.5
31.6
-6.8
LOG10
(Reported IC50)
-6.0
-5.6
-7.6
-5.2
-6.3
-8.4
-5.4
-4.9
-4.5
-4.7
References
-4.7
-5.8
-7.7
-5.4
-6.8
-5.4
-5.4
-5.6
-5.1
-4.6
-4.5
[12, 13]
[6]
[7]
[1]
[8]
[2]
[9]
[10]
[11]
[11]
[12, 13]
[14]
[3]
[15]
[16]
[10]
[17]
[18]
[19]
[20]
[10]
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
Diphenhydramine
Dofetilide
Donepezil
Doxazosin mesylate
Droperidol
Duloxetine
Flecainide
Flunarizine
Fluoxetine
Fluphenazine
Fluspirilene
Granisetron
Haloperidol
Haloperidol
hydrochloride
Hydroxyzine
Imipramine
Ketanserin
Ketoconazole
Lidoflazine
Loratadine
Mexiletene
Mesoridazine besylate
Mibefradil
Nefazodone
hydrochloride
8980
71329
5741
62978
3168
60835
41022
6365505
62857
56422455
49681772
49732006
56422468
855921
49681583
855927
56320643
56422172
11532937
49731982
56422397
49681790
-22.6
-105.7
-74.6
-21.1
-95.5
-17.65
-50.1
-16.8
-41.3
-12.08
-56.5
-17.0
-98.6
-97.9
-48.8
-106.0
-96.1
-68.9
-103.1
-67.79
-79.4
-39.2
-86.2
-72.45
-105.8
-37.6
-104.3
-105.7
11.43
0.03
0.70
6.01
0.20
7.71
2.57
10.28
2.75
5.09
0.95
21.28
0.11
0.08
-4.9
-7.5
-6.2
-5.2
-6.7
-5.1
-5.6
4.9
-5.6
-5.3
-6.0
-4.7
-6.9
-7.1
18.5
0.01
1.3
18.2
0.03
25.0
3.91
1.95
1.50
0.10
2.34
3.73
0.17
0.17
-4.7
-8
-5.9
-4.7
-7.5
-4.6
-5.4
-5.7
-5.8
-7.0
-5.6
-5.4
-6.8
-6.8
56422208
6602611
3396
6918003
3559
11495267
71612
8228
135348
456201
3926
3957
21467
36207
16746591
54911
855928
56422890
56422778
56422892
56463026
56424146
26732616
49681702
26732644
49681554
-54.3
-37.8
-29.9
-20.5
-93.2
-12.8
-60.45
-45.7
-30.0
-33.5
-93.5
-75.4
-81.8
-72.0
-113.6
-43.6
-107.97
-86.0
-99.4
-95.0
1.14
5.06
3.15
5.95
0.18
17.32
1.01
1.90
0.73
1.23
-5.9
-5.3
-5.5
-5.2
-6.8
-4.8
-6.0
-5.7
-6.1
-5.9
0.62
3.40
0.11
1.7
0.02
4.00
3.70
0.55
1.43
0.045
-6.2
-5.5
-7.0
-5.8
-7.8
-5.4
-5.4
-6.3
-5.8
-6.6
[11]
[21]
[22]
[23]
[24]
[25]
[26]
[1]
[15]
[27]
[11]
[11]
[3]
[3]
[28]
[29]
[30]
[11]
[31]
[13]
[32]
[33]
[2]
[34]
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
Nefazodone
Nifekalant
hydrochloride
Olanzapine
Ondansetron
Orphenadrine
Pergolide
Perhexiline
Perhexiline
Perphenazine
Pimozide
Prazocin
Prochlorperazine
Propafenone
Pyrilamine
Quetiapine fumarate
Quetiapine
Quinidine
Risperidone
Saquinavir
Sertraline
Sildenafil
Spironolactone
Tamoxifen
Terazosin
Terfenadine
4449
122188
49666410
49681608
-35.4
-48.8
-93.2
-92.5
2.01
1.80
-5.7
-5.7
0.045
7.90
-6.6
-5.1
[34]
4585
68647
83823
47812
5284439
5284439
4748
16362
68546
4917
36708
5284451
6918224
5002
441074
5073
60934
68617
5212
5833
2733525
44383
5405
49666419
49681594
11532864
11533039
56422147
855892
56422427
56422165
56462999
855827
855997
56422415
49681551
49666758
56320931
49666400
49681831
49665783
50085897
47193741
49816809
861987
56422373
-27.8
-26.2
-19.7
-27.9
-11.6
-2.8
-12.3
-96.9
-25.6
-24.4
-76.7
-41.7
-13.6
-18.0
-40.8
-57.6
-33.02
-9.0
-12.5
-1.6
-7.2
-8.8
-40.3
-43.2
-58.4
-74.4
-65.3
-52.6
-46.6
-79.3
-107.6
-65.9
-83.1
-103.2
-71.4
-44.6
-37.9
-98.1
-98.0
-102.09
-43.9
-39.7
-39.5
-64.3
-28.4
-108.4
21.00
12.14
4.99
9.41
12.64
11.79
4.13
0.11
6.55
3.73
0.43
4.95
21.00
21.87
1.59
0.93
0.54
16.14
19.32
19.50
7.12
32.81
1.45
-4.7
-4.9
-5.3
-5.0
-4.9
-4.9
-5.4
-7.0
-5.2
-5.4
-6.4
-5.3
-4.7
-4.7
-5.8
-6.0
-6.3
-4.8
-4.7
-4.7
-5.1
-4.5
-5.8
6.01
0.81
0.85
0.12
7.80
7.80
1.00
0.02
1.57
22.6
2.00
6.00
5.77
5.77
2.5
0.17
15.3
0.7
100
23.01
45.30
17.70
0.43
-5.2
-6.1
-6.1
-6.9
-5.1
-5.1
-6.0
-7.7
-5.8
-4.7
-5.7
-5.2
-5.2
-5.2
-5.6
-6.8
-4.8
-6.1
-4.0
-4.6
-4.3
-4.8
-6.4
[36]
[35]
[37]
[38]
[7]
[39]
[39]
[14]
[40]
[23]
[41]
[13]
[13]
[36]
[36]
[4]
[36]
[42]
[43]
[11]
[11]
[11]
[11]
[5]
71
72
73
74
Thioridazine
Trifluoperazine
Verapamil
Vinpocetine
66062
2913535
62969
443955
855568
56424129
856000
855619
-18.7
-12.2
-73.9
-115.8
-87.2
-60.4
-96.7
-121.8
4.05
8.65
0.70
0.05
-5.4
-5.1
-6.2
-7.3
0.22
1.41
0.83
0.13
-6.7
-5.9
-6.1
-6.9
[14]
[14]
[2]
[44]
Note: CID: compound ID; SID: Substance ID.
References.
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2 Chouabe C, Drici MD, Romey G, Barhanin J, Lazdunski M. HERG and KvLQT1/IsK, the cardiac K+ channels involved in long QT syndromes, are targets for calcium
channel blockers. Molecular pharmacology 1998; 54 (4): 695-703.
3 Martin RL, McDermott JS, Salmen HJ, Palmatier J, Cox BF, Gintant GA. The utility of hERG and repolarization assays in evaluating delayed cardiac repolarization:
influence of multi-channel block. Journal of cardiovascular pharmacology 2004; 43 (3): 369-79.
4 Tsujimae K, Suzuki S, Yamada M, Kurachi Y. Comparison of kinetic properties of quinidine and dofetilide block of HERG channels. European journal of
pharmacology 2004; 493 (1-3): 29-40.
5 Chachin M, Katayama Y, Yamada M, Horio Y, Ohmura T, Kitagawa H, et al. Epinastine, a nonsedating histamine H1 receptor antagonist, has a negligible effect on
HERG channel. European journal of pharmacology 1999; 374 (3): 457-60.
6 Kiesecker C, Zitron E, Luck S, Bloehs R, Scholz EP, Kathofer S, et al. Class Ia anti-arrhythmic drug ajmaline blocks HERG potassium channels: mode of action.
Naunyn-Schmiedeberg's archives of pharmacology 2004; 370 (6): 423-35.
7 Hurst RS, Higdon NR, Lawson JA, Clark MA, Rutherford-Root KL, McDonald WG, et al. Dopamine receptor agonists differ in their actions on cardiac ion channels.
European journal of pharmacology 2003; 482 (1-3): 31-7.
8 Scherer D, Hassel D, Bloehs R, Zitron E, von Lowenstern K, Seyler C, et al. Selective noradrenaline reuptake inhibitor atomoxetine directly blocks hERG currents.
British journal of pharmacology 2009; 156 (2): 226-36.
9 Silvestre JS, Prous JR. Comparative evaluation of hERG potassium channel blockade by antipsychotics. Methods and findings in experimental and clinical
pharmacology 2007; 29 (7): 457-65.
10 Gavaghan CL, Arnby CH, Blomberg N, Strandlund G, Boyer S. Development, interpretation and temporal evaluation of a global QSAR of hERG electrophysiology
screening data. Journal of computer-aided molecular design 2007; 21 (4): 189-206.
11 Polak S, Wisniowska B, Brandys J. Collation, assessment and analysis of literature in vitro data on hERG receptor blocking potency for subsequent modeling of
drugs' cardiotoxic properties . Journal of applied toxicology : JAT 2009; 29 (3): 183-206.
12 Hong HK, Jo SH. Block of HERG k channel by classic histamine h(1) receptor antagonist chlorpheniramine. The Korean journal of physiology & pharmacology :
official journal of the Korean Physiological Society and the Korean Society of Pharmacology 2009; 13 (3): 215-20.
13 Katchman AN, Koerner J, Tosaka T, Woosley RL, Ebert SN. Comparative evaluation of HERG currents and QT intervals following challenge with suspected
torsadogenic and nontorsadogenic drugs. The Journal of pharmacology and experimental therapeutics 2006; 316 (3): 1098-106.
14 Kim KS, Kim EJ. The phenothiazine drugs inhibit hERG potassium channels. Drug and chemical toxicology 2005; 28 (3): 303-13.
15 Witchel HJ, Pabbathi VK, Hofmann G, Paul AA, Hancox JC. Inhibitory actions of the selective serotonin re-uptake inhibitor citalopram on HERG and ventricular
L-type calcium currents. FEBS letters 2002; 512 (1-3): 59-66.
16 Suessbrich H, Schonherr R, Heinemann SH, Lang F, Busch AE. Specific block of cloned Herg channels by clofilium and its tertiary analog LY97241. FEBS letters
1997; 414 (2): 435-8.
17 Tian M, Dong MQ, Chiu SW, Lau CP, Li GR. Effects of the antifungal antibiotic clotrimazole on human cardiac repolarization potassium currents. British journal
of pharmacology 2006; 147 (3): 289-97.
18 Lee SY, Kim YJ, Kim KT, Choe H, Jo SH. Blockade of HERG human K+ channels and IKr of guinea-pig cardiomyocytes by the antipsychotic drug clozapine. British
journal of pharmacology 2006; 148 (4): 499-509.
19 Zhang S, Rajamani S, Chen Y, Gong Q, Rong Y, Zhou Z, et al. Cocaine blocks HERG, but not KvLQT1+minK, potassium channels. Molecular pharmacology 2001; 59
(5): 1069-76.
20 Hong HK, Park MH, Lee BH, Jo SH. Block of the human ether-a-go-go-related gene (hERG) K+ channel by the antidepressant desipramine. Biochemical and
biophysical research communications 2010; 394 (3): 536-41.
21 Pearlstein RA, Vaz RJ, Kang J, Chen XL, Preobrazhenskaya M, Shchekotikhin AE, et al. Characterization of HERG potassium channel inhibition using CoMSiA 3D
QSAR and homology modeling approaches. Bioorganic & medicinal chemistry letters 2003; 13 (10): 1829-35.
22 Chae YJ, Lee HJ, Jeon JH, Kim IB, Choi JS, Sung KW, et al. Effects of donepezil on hERG potassium channels . Brain research 2015; 1597: 77-85.
23 Thomas D, Wimmer AB, Wu K, Hammerling BC, Ficker EK, Kuryshev YA, et al. Inhibition of human ether-a-go-go-related gene potassium channels by alpha
1-adrenoceptor antagonists prazosin, doxazosin, and terazosin. Naunyn-Schmiedeberg's archives of pharmacology 2004; 369 (5): 462-72.
24 Drolet B, Zhang S, Deschenes D, Rail J, Nadeau S, Zhou Z, et al. Droperidol lengthens cardiac repolarization due to block of the rapid component of the delayed
rectifier potassium current. Journal of cardiovascular electrophysiology 1999; 10 (12): 1597-604.
25 Fischer F, Vonderlin N, Seyler C, Zitron E, Schernus B, Katus H, et al. Acute and subacute effects of the selective serotonin-noradrenaline reuptake inhibitor
duloxetine on cardiac hERG channels. Naunyn-Schmiedeberg's archives of pharmacology 2013; 386 (9): 795-804.
26 Paul AA, Witchel HJ, Hancox JC. Inhibition of the current of heterologously expressed HERG potassium channels by flecainide and comparison with quinidine,
propafenone and lignocaine. British journal of pharmacology 2002; 136 (5): 717-29.
27 Hong HK, Lee BH, Park MH, Lee SH, Chu D, Kim WJ, et al. Block of hERG K+ channel and prolongation of action potential duration by fluphenazine at
submicromolar concentration . European journal of pharmacology 2013; 702 (1-3): 165-73.
28 Sakaguchi T, Itoh H, Ding WG, Tsuji K, Nagaoka I, Oka Y, et al. Hydroxyzine, a first generation H(1)-receptor antagonist, inhibits human ether-a-go-go-related gene
(HERG) current and causes syncope in a patient with the HERG mutation. Journal of pharmacological sciences 2008; 108 (4): 462-71.
29 Teschemacher AG, Seward EP, Hancox JC, Witchel HJ. Inhibition of the current of heterologously expressed HERG potassium channels by imipramine and
amitriptyline. British journal of pharmacology 1999; 128 (2): 479-85.
30 Tang Q, Li ZQ, Li W, Guo J, Sun HY, Zhang XH, et al. The 5-HT2 antagonist ketanserin is an open channel blocker of human cardiac ether-a-go-go-related gene
(hERG) potassium channels . British journal of pharmacology 2008; 155 (3): 365-73.
31 Ridley JM, Dooley PC, Milnes JT, Witchel HJ, Hancox JC. Lidoflazine is a high affinity blocker of the HERG K(+)channel. Journal of molecular and cellular
cardiology 2004; 36 (5): 701-5.
32 Gualdani R, Tadini-Buoninsegni F, Roselli M, Defrenza I, Contino M, Colabufo NA, et al. Inhibition of hERG potassium channel by the antiarrhythmic agent
mexiletine and its metabolite m-hydroxymexiletine. Pharmacology research & perspectives 2015; 3 (5): e00160.
33 Su Z, Martin R, Cox BF, Gintant G. Mesoridazine: an open-channel blocker of human ether-a-go-go-related gene K+ channel. Journal of molecular and cellular
cardiology 2004; 36 (1): 151-60.
34 Shin DS, Park MJ, Lee HA, Lee JY, Chung HC, Yoo DS, et al. A novel assessment of nefazodone-induced hERG inhibition by electrophysiological and stereochemical
method . Toxicology and applied pharmacology 2014; 274 (3): 361-71.
35 Kushida S, Ogura T, Komuro I, Nakaya H. Inhibitory effect of the class III antiarrhythmic drug nifekalant on HERG channels: mode of action. European journal of
pharmacology 2002; 457 (1): 19-27.
36 Kongsamut S, Kang J, Chen XL, Roehr J, Rampe D. A comparison of the receptor binding and HERG channel affinities for a series of antipsychotic drugs. European
journal of pharmacology 2002; 450 (1): 37-41.
37 Kuryshev YA, Brown AM, Wang L, Benedict CR, Rampe D. Interactions of the 5-hydroxytryptamine 3 antagonist class of antiemetic drugs with human cardiac ion
channels. The Journal of pharmacology and experimental therapeutics 2000; 295 (2): 614-20.
38 Scholz EP, Konrad FM, Weiss DL, Zitron E, Kiesecker C, Bloehs R, et al. Anticholinergic antiparkinson drug orphenadrine inhibits HERG channels: block
attenuation by mutations of the pore residues Y652 or F656. Naunyn-Schmiedeberg's archives of pharmacology 2007; 376 (4): 275-84.
39 Walker BD, Valenzuela SM, Singleton CB, Tie H, Bursill JA, Wyse KR, et al. Inhibition of HERG channels stably expressed in a mammalian cell line by the
antianginal agent perhexiline maleate. British journal of pharmacology 1999; 127 (1): 243-51.
40 Kang J, Wang L, Cai F, Rampe D. High affinity blockade of the HERG cardiac K(+) channel by the neuroleptic pimozide. European journal of pharmacology 2000;
392 (3): 137-40.
41 Kim MD, Eun SY, Jo SH. Blockade of HERG human K+ channel and IKr of guinea pig cardiomyocytes by prochlorperazine . European journal of pharmacology 2006;
544 (1-3): 82-90.
42 Anson BD, Weaver JG, Ackerman MJ, Akinsete O, Henry K, January CT, et al. Blockade of HERG channels by HIV protease inhibitors. Lancet 2005; 365 (9460):
682-6.
43 Lee HA, Kim KS, Hyun SA, Park SG, Kim SJ. Wide spectrum of inhibitory effects of sertraline on cardiac ion channels. The Korean journal of physiology &
pharmacology : official journal of the Korean Physiological Society and the Korean Society of Pharmacology 2012; 16 (5): 327-32.
44 Yunomae K, Ichisaki S, Matsuo J, Nagayama S, Fukuzaki K, Nagata R, et al. Effects of phosphodiesterase (PDE) inhibitors on human ether-a-go-go related gene
(hERG) channel activity. Journal of applied toxicology : JAT 2007; 27 (1): 78-85.
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