Evolution and Diversity of Life (Biology 2010) Syllabus for Spring, 2008 Overview: Organisms are the result of their evolutionary history. This course teaches that history and how it is investigated. We trace the evolution of reproductive, metabolic, and morphologic diversity from the origin of life through the major lineages of extant organisms. The environmental and biological processes behind major milestones in evolution are discussed along with their basis in evidence and methodology. The diversity of major groups is explored in their evolutionary context. Instructors: Teaching Assistants: Lectures: Textbook/ Readings: Discussion Sections: Lynn Bohs – 228 BIOL, 585-0380, bohs@biology.utah.edu David Carrier -- 123 BIOL, 585-7967, carrier@biology.utah.edu Office hours by appointment Ryan Bixenmann: 540 ASB, 585-9853, bixenmann@biology.utah.edu Susan Bush: 502B ASB, 587-3405, sbush@biology.utah.edu Félix Guzmán-Díaz: 232 SB,585-0420, f.a.guzman@utah.edu Martin Moyano: 310 SB, 581-6893, martin.moyano@utah.edu Adam Nelson: 580 ASB, 585-9678, adam.nelson@utah.edu Office hours by appointment M, W, F, 11:50am – 12:40pm, ASB 220 Required Readings: 1. Campbell & Reese, Biology 8th edition (available at the U. bookstore and on 2 hour reserve in Marriott Library). Note: previous editions of this textbook may be adequate, but we cannot guarantee this. 2. Andrew Knoll, “Life on a Young Planet” (available at the U. bookstore and on 2 hour reserve in Marriot Library). 3. Journal articles as announced. On reserve in the Marriott Library. Go to the Reserve Desk or visit the Marriott Library home page (http://www.lib.utah.edu/) and select “course reserves.” Type the course number or instructor's last name to find a list of articles available for downloading. We strongly recommend that you attend a discussion section each week. Choose from the alternatives below to suit your schedule. These sessions, which are led by the teaching assistants (TAs), allow you to ask questions regarding the lectures or assigned readings. You may attend more than one discussion if you prefer. Discussion times and places are as follows: M T W W Th 9:40am—10:30am 10:45am—11:35am 8:35am — 9:25am 12:55pm— 1:45pm 10:45am — 11:35am Félix Guzmán-Díaz Ryan Bixenmann Adam Nelson Susan Bush Martin Moyano SW 137 LCB 225 ASB 230 ASB 230 LCB 219 TA office hours and places are as follows: M T W 10:35—11:25 AM 4:35—5:25 PM 2:00—2:50 PM Adam Nelson Féliz Guzmán-Díaz Susan Bush 580 ASB 232 SB 502B ASB Th Th 2:00 – 2:50 PM 12:55—1:45 PM Martin Moyano Ryan Bixenmann 310 SB 540 ASB There will be no Discussion sections the first week of class. During exam week there will be an additional review session(s). Attendance and lecture notes: You are expected to attend all lectures. You are responsible for taking your own notes during lecture. If unavoidable circumstances prevent you from attending a lecture, obtain lecture notes from someone else in the class. Lecture notes will not be provided by professors or teaching assistants. Handouts: Most lectures will have handouts, made available outside the lecture hall. Handouts will also be available for downloading from the library’s course reserves website (see next). Course Website and Reserve Materials: The syllabus, handouts, homework and exam keys, and other course related items will be posted on the WebCT site assigned to this course. You should be able to access this site by logging on with your uNID number and password to the University of Utah homepage. Lecture notes will not be posted, but the power points will be available. Journal articles are available on the Marriott e-Reserve linked to this site. Extra copies of the course textbooks are on 2-hour reserve in the Marriott Library. Grading: The final grade is based on a total of 500 points. There are four exams of 100 points each. There are four homework assignments of 25 points each. No grades are dropped. There are no extra credit exercises. Letter grades are assigned at the end of the class. The point breakdown will be no more strict than the following: 90-100% A/A-, 80-90% B+/B/B-, 70-80% C+/C/C-, 60-70% D+/D/D-, <60% E. In other words, if you get 85% of the total points, you are guaranteed of a grade of B or above. Exams will be based on lecture material. The best study guide for the exams are your own lecture and discussion notes. Review session(s) will be given out of class time for each exam. Exams will be graded as quickly as possible and returned in class. Keys will be posted on the website. Exams that are not picked up will be available in Building 44. There will be no makeup exams unless permission has been obtained before the exam from the instructor. The homework assignments are take home exercises that consist of study problems. You may discuss the exercises with other students but your written answers must be your own work. Late exercises will be subject to point deduction, and their safe handling cannot be guaranteed. Questions regarding grading other than arithmetic errors should be submitted in writing to a Teaching Assistant within one week of the day on which assignments are returned. Course Drop Policy: The drop and withdrawal policy is the same as the University of Utah policy described in the Class Schedule. Wednesday, January 16 is the last day to drop with no tuition and no notation on the transcript. Friday, February 29 is the last day students can withdraw, but tuition will be assessed. Consult the registrar or academic calendar for more information. Evolution and Diversity Lab, Biology 2015: A separate lab course, Biology 2015, runs concurrently with Biology 2010. It meets Tuesday and Wednesday from 2-5 PM. The topics follow the order of Biology 2010, but give you a chance to experience examples of the organisms that we cover in class. This course complements Biology 2010 and is highly recommended but not required. Contact instructor Ed King for more information. Americans with Disabilities Act (ADA): In accordance with University policy with respect to ADA matters and students with other identifiable disabilities, we will provide additional examination time as needed and appropriate. Students needing this service should identify themselves to the course instructor at least one week in advance of the first examination. In addition you must provide a written statement of how we can assist you in completing course requirements. Students requiring additional time with teaching assistants are encouraged to attend as many discussion sections as needed and also to arrange to meet with the teaching assistants or the faculty during their office hours. Lecture Schedule DATE TOPIC PROFESSOR Jan 7 Course intro. Scientific names and classification Bohs Jan 9 Phylogenies Bohs Jan 11 The tree of life Bohs Jan 14 Origin of life I Bohs Jan 16 Origin of life II Bohs Jan 18 Prokaryotic lineages. Homework 1 Assigned Bohs Jan 21 Martin Luther King Jr. Day – No class Jan 23 Prokaryotic metabolism. Bohs Jan 25 Evolution of eukaryotes. Homework 1 due Bohs Jan 28 Protozoans: heterotrophic protists Bohs Jan 30 Protist diversity Bohs Feb 1 EXAM 1 Bohs Feb 4 Origin of the algae Bohs Feb 6 Algal diversity Bohs Feb 8 Reproductive biology of algae Bohs Feb 11 Evolution of land plants Bohs Feb 13 Bryophytes: non-vascular plants Bohs Feb 15 Seedless vascular plants. Homework 2 assigned Bohs Feb 18 Presidents’ Day – No class Feb 20 Evolution of seed plants Bohs Feb 22 Gymnosperms. Homework 2 due Bohs Feb 25 Origin of angiosperms Bohs Feb 27 Angiosperms Bohs Feb 29 EXAM 2 Bohs Mar 3 Fungi I. Chitrids, zygomycetes, ascomycetes Carrier Mar 5 Fungi II. Basidiomycetes, deuteromycetes; symbioses Carrier Mar 7 Animal origins, body plans & phylogenetic hypotheses Carrier Mar 10 Rise of metazoans and the “Cambrian Explosion” Homework 3 assigned Carrier Mar 12 Placozoa; Sponges Carrier Mar 14 Radiate phyla Homework 3 due Carrier Mar 17-22 Spring break – No class Mar 24 Origins of Bilateria. Flatworms: Planarians, flukes & tapeworms Carrier Mar 26 Origins of body cavities; Rotifers & nematodes Carrier Mar 28 Protostomia I. Mollusca Carrier Mar 31 Protostomia I. Mollusca Carrier Apr 2 EXAM 3 Carrier Apr 4 Protostomia II. Annelida Apr 7 Protostomia III. Arthropoda Carrier Apr 9 Protostomia III. Arthropoda Carrier Apr 11 Protostomia III. Arthropoda Carrier Apr 14 Echinoderms Homework 4 assigned. Carrier Apr 16 Protochordates; Origin of vertebrates. Carrier Apr 18 Vertebrates I. Fishes. Homework 4 due. Carrier Apr 21 Vertebrates II. Tetrapods Carrier Apr 23 End of Diversity Carrier May 1 Carrier . (Thursday) EXAM 4. 10:30am--12:30 pm. ASB 220 Carrier