Supplementary Online Material Fig. S1 Map of the Sycamore Creek watershed, a 505 km2 catchment northeast of Phoenix, Arizona. Data from three climate stations were used in the SWAT model. The daily USGS gauge discharge data (USGS gauge #09510200) were used to calibrate the hydrologic process of model, and the field-observed nitrate data were used to calibrate model nitrate flux. The watershed areas of the field station and the USGS gauge site are 272 km2 and 426km2, respectively. Three weather stations used in the SWAT model are outside the watershed because there is no available climatic data within the Sycamore Creek watershed. Fig. S2 Sensitivity range of daily streamflow based on parameter distribution as generated with the Markov Chain Monte Carlo (MCMC) application during the 10-year calibration period (1977-1986); sd is the standard deviation of the model response. The light gray shade by Min-Max represents the manimum and maximum model response at each time step, whereas the dark gray shade by Mean±sd refers to the mean model response plus/minus one standard deviation. Narrower shade area represents lower uncertainty in the calibrated SWAT model. Fig. S3 Monthly mean minimum (A) and maximum (B) observed and downscaled air temperature, and deviations from the base period (1961–1990) predicted for the 2020s (2011–2040), 2050s (2041–2070), and 2080s (2071–2100). Fig. S4 Observed and downscaled average monthly precipitation for the base period (1961–1990), and projections of future precipitation for the 2020s (2011–2040), 2050s (2041–2070), and 2080s (2071–2100). Table S1. Distribution of changes in averaged annual temperatures (oC) and precipitation (% change) in 2041-2070 in the Southwest region for the high (A2) and low (B1) emissions scenarios based on 15 CMIP3 models, and for the statistically downscaled data from CGCM2 for the SWAT model. The reference period is 1971-2000. Comparing the averaged change from 15 CMIP3 models, we conclude that the statistically downscaled future climatic data used in this study are reasonable. The downscaled temperature falls within the range of projected temperature of 15 CMIP3 models (Garfin et al. 2013). The decrease in the statistically downscaled precipitation for the three selected climatic stations, however, is larger than the averaged precipitation change over the entire Southwest region. Projected precipitation in the Southwest is characterized by high spatial variability: CMIP3 models projected increased precipitation in the northern part of the region but decreased prediciptation in the southern portions. For the region as a whole, the decrease in averaged precipitation in the Southwest is therefore smaller than the statistically downscaled data for our research area (in the southern part of the Southwest region). Variables Temperature Precipitation 15 CMIP3 models A2 B1 o 1.1-3.3 C 0.4-2.2 oC -17–7% -10–3% Statistically downscaled data Station A Station B Station C 1.49 oC 1.52 oC 1.53 oC -28% -20% -23% *Data source: Garfin G, Jardine A, Merideth R, Black M, LeRoy S, eds. (2013). Assessment of Climate Change in the Southwest United States: A Report Prepared for the National Climate Assessment. A report by the Southwest Climate Alliance. Washington, DC: Island Press. Table S2. Variables selected for temperature and precipitation downscaling. The information for each variable is in the documents of the second version of Canadian Centre for Climate Modelling and Analysis Coupled Global Climate Model (CGCM2). Variables Description Max and min temperature 500 hPa airflow strength p5_f 500 hPa zonal velocity p5_u 500 hPa geopotential height p500 Mean temperature at 2m temp Precipitation 500 hPa meridional velocity p5_v 500 hPa vorticity p5_z 500 hPa geopotential height p500 500 hPa divergence p5zh Table S3. The data used in the SWAT model and their sources. Data Digital elevation model (DEM) Soil map Land cover Climate data Discharge data Water quality data Source USGS National Elevation Dataset (NED) (http://ned.usgs.gov/). U.S. General Soil Map (STATSGO2) from the Natural Resources Conservation Service (NRCS) (http://soils.usda.gov/survey/geography/statsgo/) 2001 National Land Cover Data (NLCD 2001) from U.S. EPA (http://www.epa.gov/mrlc/nlcd-2001.html) Daily data of three stations from National Climatic Data Center (http://www.ncdc.noaa.gov/oa/ncdc.html) Daily data of station (USGS # 09510200) from U.S. Geological Survey (http://waterdata.usgs.gov/az/nwis/rt) From field observation Table S4. List of parameters that are sensitive to stream discharge and nitrate flux and their final calibrated values. Further description of each parameter may be found in the SWAT user manual (Neitsch, Arnold et al. 2005). Sensitive Description imet Calibrated parameters value Parameters sensitive to both discharge and nitrate flux 1 0.0859 ALPHA_BF Baseflow alpha factor (days) Biological mixing effeciency 1 0.6948 BIOMIX Maximum potential leaf area index 1 0.3010 BLAI Maximum canopy storage (mm H2O) 1 8.3800 CANMX Effective hydraulic conductivity in main 1 9.4799 CH_K2 channel alluvium (mm/hr) Manning’s n value for main channel 1 0.1622 CH_N2 Initial SCS runoff curve number for 3 0.7469 CN2 moisture condition II Plant uptake compensation factor 1 1.0000 EPCO Soil evaporation compensation factor 1 0.7584 ESCO 2 6.8865 GW_DELAY Groundwater delay time (days) Average slope steepness (m/m) 3 -24.3570 SLOPE Average slope length (m) 3 -4.5246 SLSUBBSN Moist soil albedo 3 -6.9736 SOL_ALB Available water capacity for the soil layer 3 25.0000 SOL_AWC (mm H2O/mm soil) Saturated hydraulic conductivity (mm/hr) 3 -19.0760 SOL_K Depth from soil surface to bottom of layer 3 22.6520 SOL_Z (mm) Surface runoff lag coefficient 1 0.5604 SURLAG Parameter sensitive to discharge only 2 -0.0133 GW_REVAP Groundwater “revap” coefficient Threshold depth of water in the shallow 2 -574.3900 GWQMN aquifer required for return flow to occur (mm H2O) Threshold depth of water in the shallow 2 -36.7860 REVAPMN aquifer for “revap” or percolation to the deep aquifer to occur (mm H2O) Parameters sensitive to nitrate flux only Nitrogen percolation coefficient 1 0.3600 NPERCO Phosphorus soil partitioning coefficient 1 140.1200 PHOSKD Phosphorus percolation coefficient 1 16.0820 PPERCO 1 0.7357 RCHRG_DP Deep aquifer percolation fraction 1 0.4256 USLE_P imet: 1- replacement of initial parameter by value, 2 - adding value to initial parameter, 3 - multiplying initial parameter by value (in percentage)