Novato Unified School District Course Description Principals of Biotechnology 1 Course Title Principles of Biotechnology I School San Marin HS, Novato HS and Marin Oaks HS District Novato Unified School District City Novato, California 94945 Contact Information Curriculum and Instruction Department or Discipline History/Social Studies English/Language Arts Mathematics Laboratory Science Language other than English Visual & Performing Arts (for 2003) College Preparatory Elective: Subject Area: __________________ Grade Level(s) for which course is intended 10/11/12 Contact Information Length of Course Semester Phone: 415-897-4269 Fax: 415-892-1622 Year Other Unit Value 0.5 (half year equivalent) 1.0 (one year equivalent) 2.0 (two year equivalent) Other: _____________________ Seeking “Honors” distinction? Yes No Email: courseoutline@nusd.org Date of School Board Approval: Course Number Assigned: Was this course previously approved by UC? Yes If so, in what year? Under what course title? Pre-Requisites Biology Chemistry or integrated Chemistry/Math short course (in development) Co-Requisites Chemistry 1 No Novato Unified School District Course Description Principals of Biotechnology 1 Brief Course Description for Academic Planning Guide (student friendly) This one-year Biotechnology course will cover relevant topics in the field of Biotechnology. Students will learn laboratory skills and techniques used in the field and study topics such as bioethics, careers in Biotechnology, uses of databases and other resources, scientific recordkeeping, communication of data and the process of product research and development. Students will develop laboratory skills, critical thinking and communication skills currently used in the fields of genetics, microbiology and biotechnology. The course will prepare students to work in the Biotechnology environment and pursue the study of Biotechnology at the college level. The course will include four components: lecture, lab, current research article discussion groups and a work-site based research project. The course is intended to be the first of an optional two year Career Technology Education (CTE) program that would lead to a certification to work in the Biotechnology industry. COURSE CONTENT A. Course goals and/or major student outcomes The course will prepare students to work in Biotechnology laboratory and to continue in further studies in Biotechnology. The course will cover the following topics: Basic concepts and techniques used in Biotechnology, basic laboratory skills including materials handling and safety, how to manage time in the laboratory environment, using and maintaining equipment, mathematical calculations used in the laboratory environment, including proper use of significant figures, scientific notation, calculating concentrations to make solutions, percent yield, statistical analysis of data, pH calculations to make buffers, appropriate use of lab ware for measurement, careers in Biotechnology, Bioethics, applications of the scientific method such as designing experiments, following and writing protocols, troubleshooting, analyzing and interpreting data, presenting data in written and oral form using graphs and figures and using data bases and resources and product research and development. Labs will include electrophoresis, DNA isolation, restriction digestion and plasmid mapping, bacterial transformation, protein purification, PCR, western blotting and ELISA, and DNA sequencing. Students will conduct a research project in collaboration with partners in industry and academia and analyze, present and discuss current Biotechnology research. The course is intended prepare students to pursue Biotechnology courses at the college level, work in a Biotechnology laboratory or to be the first of an optional two year Career Technology Education (CTE) program that would certify students to work in the biotechnology environment in entry level positions. 2 Novato Unified School District Course Description Principals of Biotechnology 1 B. Course Objectives-specific student learning objectives Objectives Students will Understand CTE Biotechnology Pathway Standards Basic concepts and techniques used in Biotechnology Basic laboratory skills -including materials handling and safety, how to manage time in the laboratory environment, using and maintaining equipment, mathematical calculations used in the laboratory environment, including proper use of significant figures, scientific notation, calculating concentrations to make solutions, percent yield, statistical analysis of data, and pH calculations to make buffers A1.0 Students know the role of the biotechnology industry and biotechnology product development in curing diseases A5.0 Students understand biotechnology product design and development, laboratory procedures, product licensure, and the regulatory process for product development and clinical trials A2.0 Students know the fundamentals of mathematical and scientific concepts related to biotechnology A3.1 Understand recombinant DNA, genetic engineering, monoclonal antibody production, separation and purification of biotechnology products, and bioprocessing. A4.0 Students understand the principles of solution preparation, contamination control, measurement and calibration, and emergency laboratory response Appropriate use of lab ware for measurement A2.0 Students know the fundamentals of mathematical and scientific concepts related to biotechnology Careers in Biotechnology A3.2 Understand how the fields of nanotechnology, bioinformatics, genomics, proteomics, and transcriptomics influence new and emerging career opportunities. A1.3 Understand the legal and ethical issues regarding the use of biotechnology to cure diseases A6.0 Students understand the ethical, moral, legal, and cultural issues related to the use of biotechnology research and Bioethics 3 Novato Unified School District Course Description Principals of Biotechnology 1 Objectives Students will Understand CTE Biotechnology Pathway Standards product development A6.3 Understand the necessity for accurate documentation and recordkeeping in biotechnology research and product development. Applications of the scientific method -such as designing experiments, following and writing protocols, troubleshooting, analyzing and interpreting data, presenting data in written and oral form using graphs and figures and using data bases and resources Laboratory skills: Electrophoresis, DNA isolation, Restriction digestion and plasmid mapping, Transformation, Protein purification, PCR, Western blotting and ELISA, and DNA sequencing. Objectives Students will Understand A2.0 Students know the fundamentals of mathematical and scientific concepts related to biotechnology A3.0 Students understand the role of recombinant DNA and genetic engineering, bioprocessing, monoclonal antibody production, separation and purification of biotechnology products, nanotechnology, bioinformatics, genomics, proteomics, and transcriptomics in biotechnical product development A4.0 Students understand the principles of solution preparation, contamination control, measurement and calibration, and emergency laboratory response California Science Content Standards B=Biology/Life Science, C=Chemistry, IE=Investigation and Experimentation Basic concepts and techniques used in Biotechnology B-5. The genetic composition of cells can be altered by incorporation of exogenous DNA into the cells. As a basis for understanding this concept: a. Students know the general structures and functions of DNA, RNA, and protein. 4 Novato Unified School District Course Description Principals of Biotechnology 1 Objectives Students will Understand California Science Content Standards B=Biology/Life Science, C=Chemistry, IE=Investigation and Experimentation b. Students know how to apply basepairing rules to explain precise copying of DNA during semi conservative replication and transcription of information from DNA into mRNA. c. Students know how genetic engineering (biotechnology) is used to produce novel biomedical and agricultural products. d. * Students know how basic DNA technology (restriction digestion by endonucleases, gel electrophoresis, ligation, and transformation) is used to construct recombinant DNA molecules. e. * Students know how exogenous DNA can be inserted into bacterial cells to alter their genetic makeup and support expression of new protein products. Basic laboratory skills -including materials handling and safety, how to manage time in the laboratory environment, using and maintaining equipment, mathematical calculations used in the laboratory environment, including proper use of significant figures, scientific notation, calculating concentrations to make solutions, percent yield, statistical analysis of data, and pH calculations to make buffers C-3. The conservation of atoms in chemical reactions leads to the principle of conservation of matter and the ability to calculate the mass of products and reactants. As a basis for understanding this concept: a. Students know the quantity one mole is set by defining one mole of carbon 12 atoms to have a mass of exactly 12 grams. b. Students know one mole equals 6.02x1023particles (atoms or 5 Novato Unified School District Course Description Principals of Biotechnology 1 Objectives Students will Understand California Science Content Standards B=Biology/Life Science, C=Chemistry, IE=Investigation and Experimentation molecules). c. Students know how to determine the molar mass of a molecule from its chemical formula and a table of atomic masses and how to convert the mass of a molecular substance to moles, number of particles, or volume of gas at standard temperature and pressure. d. Students know how to calculate the masses of reactants and products in a chemical reaction from the mass of one of the reactants or products and the relevant atomic masses. e. * Students know how to calculate percent yield in a chemical reaction. f. * Students know how to identify reactions that involve oxidation and reduction and how to balance oxidation-reduction reactions. C-5. Acids, bases, and salts are three classes of compounds that form ions in water solutions. As a basis for understanding this concept: a. Students know the observable properties of acids, bases, and salt solutions. b. Students know acids are hydrogenion-donating and bases are hydrogen-ion-accepting substances. c. Students know strong acids and bases fully dissociate and weak acids and bases partially dissociate. d. Students know how to use the pH 6 Novato Unified School District Course Description Principals of Biotechnology 1 Objectives Students will Understand California Science Content Standards B=Biology/Life Science, C=Chemistry, IE=Investigation and Experimentation scale to characterize acid and base solutions. e. * Students know the Arrhenius, Brønsted-Lowry, and Lewis acidbase definitions. f. * Students know how to calculate pH from the hydrogen-ion concentration. g. * Students know buffers stabilize pH in acid-base reactions. C-6. Solutions are homogeneous mixtures of two or more substances. As a basis for understanding this concept: a. Students know the definitions of solute and solvent. b. Students know how to describe the dissolving process at the molecular level by using the concept of random molecular motion. c. Students know temperature, pressure, and surface area affect the dissolving process. d. Students know how to calculate the concentration of a solute in terms of grams per liter, molarity, parts per million, and percent composition. e. Students know the relationship between the molality of a solute in a solution and the solution's depressed freezing point or elevated boiling point. f. Students know how molecules in a 7 Novato Unified School District Course Description Principals of Biotechnology 1 Objectives Students will Understand California Science Content Standards B=Biology/Life Science, C=Chemistry, IE=Investigation and Experimentation solution are separated or purified by the methods of chromatography and distillation. IE-1e-n. Scientific progress is made by asking meaningful questions and conducting careful investigations. As a basis for understanding this concept and addressing the content in the other four strands, students should develop their own questions and perform investigations. Students will: e. Solve scientific problems by using quadratic equations and simple trigonometric, exponential, and logarithmic functions. f. Distinguish between hypothesis and theory as scientific terms. g. Recognize the usefulness and limitations of models and theories as scientific representations of reality. j. Recognize the issues of statistical variability and the need for controlled tests. Appropriate use of lab ware for measurement IE-1a-c. Scientific progress is made by asking meaningful questions and conducting careful investigations. As a basis for understanding this concept and addressing the content in the other four strands, students should develop their own questions and perform investigations. Students will: a. Select and use appropriate tools and technology (such as computer-linked probes, spreadsheets, and graphing calculators) to perform tests, collect data, analyze relationships, and display data. b. Identify and communicate sources of 8 Novato Unified School District Course Description Principals of Biotechnology 1 Objectives Students will Understand California Science Content Standards B=Biology/Life Science, C=Chemistry, IE=Investigation and Experimentation unavoidable experimental error. c. Identify possible reasons for inconsistent results, such as sources of error or uncontrolled conditions. Careers in Biotechnology Bioethics Applications of the scientific method -such as designing experiments, following and writing protocols, troubleshooting, analyzing and interpreting data, presenting data in written and oral form using graphs and figures and using data bases and resources B-5c. Students know how genetic engineering (biotechnology) is used to produce novel biomedical and agricultural products. IE-1. Scientific progress is made by asking meaningful questions and conducting careful investigations. As a basis for understanding this concept and addressing the content in the other four strands, students should develop their own questions and perform investigations. Students will: a. Select and use appropriate tools and technology (such as computer-linked probes, spreadsheets, and graphing calculators) to perform tests, collect data, analyze relationships, and display data. b. Identify and communicate sources of unavoidable experimental error. c. Identify possible reasons for inconsistent results, such as sources of error or uncontrolled conditions. d. Formulate explanations by using logic and evidence. e. Solve scientific problems by using quadratic equations and simple trigonometric, exponential, and logarithmic functions. f. Distinguish between hypothesis and theory as scientific terms. g. Recognize the usefulness and limitations of models and theories as scientific representations of reality. 9 Novato Unified School District Course Description Principals of Biotechnology 1 Objectives Students will Understand California Science Content Standards B=Biology/Life Science, C=Chemistry, IE=Investigation and Experimentation h. Read and interpret topographic and geologic maps. i. Analyze the locations, sequences, or time intervals that are characteristic of natural phenomena (e.g., relative ages of rocks, locations of planets over time, and succession of species in an ecosystem). j. Recognize the issues of statistical variability and the need for controlled tests. k. Recognize the cumulative nature of scientific evidence. l. Analyze situations and solve problems that require combining and applying concepts from more than one area of science. m. Investigate a science-based societal issue by researching the literature, analyzing data, and communicating the findings. Examples of issues include irradiation of food, cloning of animals by somatic cell nuclear transfer, choice of energy sources, and land and water use decisions in California. n. Know that when an observation does not agree with an accepted scientific theory, the observation is sometimes mistaken or fraudulent (e.g., the Piltdown Man fossil or unidentified flying objects) and that the theory is sometimes wrong (e.g., the Ptolemaic model of the movement of the Sun, Moon, and planets). Laboratory skills: Electrophoresis, DNA isolation, Restriction digestion and plasmid mapping, Transformation, Protein purification, PCR, Western blotting and ELISA, and DNA sequencing. B-4. Genes are a set of instructions encoded in the DNA sequence of each organism that specify the sequence of amino acids in proteins characteristic of that organism. As a basis for understanding this concept: a. Students know the general pathway by which ribosomes synthesize 10 Novato Unified School District Course Description Principals of Biotechnology 1 Objectives Students will Understand California Science Content Standards B=Biology/Life Science, C=Chemistry, IE=Investigation and Experimentation proteins, using tRNAs to translate genetic information in mRNA. b. Students know how to apply the genetic coding rules to predict the sequence of amino acids from a sequence of codons in RNA. c. Students know how mutations in the DNA sequence of a gene may or may not affect the expression of the gene or the sequence of amino acids in an encoded protein. d. Students know specialization of cells in multi cellular organisms is usually due to different patterns of gene expression rather than to differences of the genes themselves. e. Students know proteins can differ from one another in the number and sequence of amino acids. f. * Students know why proteins having different amino acid sequences typically have different shapes and chemical properties. B-5. The genetic composition of cells can be altered by incorporation of exogenous DNA into the cells. As a basis for understanding this concept: f. Students know the general structures and functions of DNA, RNA, and protein. g. Students know how to apply basepairing rules to explain precise copying of DNA during semi 11 Novato Unified School District Course Description Principals of Biotechnology 1 Objectives Students will Understand California Science Content Standards B=Biology/Life Science, C=Chemistry, IE=Investigation and Experimentation conservative replication and transcription of information from DNA into mRNA. h. Students know how genetic engineering (biotechnology) is used to produce novel biomedical and agricultural products. i. Students know how basic DNA technology (restriction digestion by endonucleases, gel electrophoresis, ligation, and transformation) is used to construct recombinant DNA molecules. j. Students know how exogenous DNA can be inserted into bacterial cells to alter their genetic makeup and support expression of new protein products. C. Outline Topics/Units/Themes I. What is Biotechnology II. Basic Concepts and Techniques Used in Biotechnology 12 Key Activities/Assignments/ Standard(s) addressed in Key Activities Topic (Key activities) I. What is Biotechnology History of DNA Science, DNA Chemistry, recombinant DNA, genetic engineering, research, development and production of biotechnology product, testing of biotechnology products (Lecture) II. Basic Concepts and Techniques Used in Biotechnology Genetic diseases as models for the mechanisms of human inheritance Factors that complicate inheritance Novato Unified School District Course Description Principals of Biotechnology 1 Topics/Units/Themes Key Activities/Assignments/ Standard(s) addressed in Key Activities Topic (Key activities) Restriction Endonucleases, Gene expression-DNA replication, transcription, and translation, Protein structure, function, and purification (Lecture, Laboratories, Journal articles, Research project) III. Lab Basics III. Lab Basics Materials handling and safety of chemicals and microorganisms, MSDS, OSHA, Maintaining and using lab equipment, balances, centrifuges, sterile environment, other equipment Lab Math-calculating concentrations and making solutions, calculating and making buffers, statistical analysis of data, calculation of percent yield, metric system, scientific notation, significant figures in measurement and calculations of pH and use of buffers, Appropriate use of equipment and sample transfer techniques for measuring accurately Managing time in the laboratory (Lecture, Laboratories) IV. Practice of the Scientific Method IV. Practice of the Scientific Method Designing experiments, writing and testing protocols, conducting experiments, analyzing data, presenting data in the laboratory notebook and in an oral presentation, troubleshooting and developing an SOP (Lecture, Laboratories, Journal articles, Research project) V. Bioethics and Intellectual Property V. Bioethics and Intellectual Property Practicing Ethical Science What is plagiarism, how to protect your IP, contemporary issues in biotechnology-Stem cells, cloning 13 Novato Unified School District Course Description Principals of Biotechnology 1 Topics/Units/Themes Key Activities/Assignments/ Standard(s) addressed in Key Activities Topic (Key activities) (Lecture, Laboratories, Journal articles, Research project, Case studies) VI. Use of Databases and Other Resources VI. Use of Databases and Other Resources Online protein and DNA databases, Literature searches, Patent Searches Printed Resources Software to Manipulate and Design Proteins and DNA (Lecture, Laboratories, Research project) VII. Careers in Biotechnology VII. Careers in Biotechnology Nanotechnology, Bioinformatics, Genomics, Proteomics, Research and Development, Marketing, Sales, Intellectual Property Law (Lecture, Internship) VIII. Laboratory Procedures VIII. Laboratory Procedures Electrophoresis DNA Isolation Restriction Digests and Plasmid Mapping Bacterial Transformation Protein Expression and Purification PCR Western Blotting ELISA DNA Sequencing. (Laboratories) IX. Current Research in Biotechnology X. Research Project 14 IX. Current Research in Biotechnology Students will take turns presenting peer reviewed articles to students in the class X. Research Project The student will propose a question to research, design experiments, write protocols, conduct experiments, analyze data, trouble shoot and present the data Novato Unified School District Course Description Principals of Biotechnology 1 Topics/Units/Themes Key Activities/Assignments/ Standard(s) addressed in Key Activities Topic (Key activities) in a written and oral form to the class This project will be done in collaboration with the Buck Institute or Biomarin and will be conducted during the second semester of the class. D. Texts and supplemental instructional materials Biotechnology: Science for the New Millennium by Ellen Daugherty Biotechnology Laboratory Manual by Ellen Daugherty E. Instructional methods and strategies Lectures Laboratories Scientific Literature Analysis Research Project Guest Lecturers Field trips F. Assessment methods and/or tools Quizzes, tests and comprehensive exams Presentations of student research and scientific literature Laboratory Notebook Research project Evaluation G. Assessment criteria Rubric scores on assignments Standards based quizzes and tests Teachers’ professional judgment of quality based on assigned criteria Accumulated points from the above assessments will be evaluated as follows: 90-100% Exceptional 80-89% Above average 70-79% Average 60-70% Below average Below 60% Unacceptable 15