2005 年与 2006 年上半年的一年半时间内, 生物信息中心发表 SCI 论文共 22 篇.
其中作为第一作者、单位发表 14 篇:
1.
Zhang Y, Liu XS, Liu QR, Wei L. Genome-wide in silico identification and analysis of cis natural
antisense transcripts (cis-NATs) in ten species. Nucleic Acids Res. 2006 Jul 18;34(12):3465-75.
（SCI impact factor IF = 7.55）
2.
Cai Z, Mao X, Li S, Wei L. Genome comparison using Gene Ontology (GO) with statistical testing,
BMC Bioinformatics 2006, 7:374.（SCI impact factor IF = 4.96）
3.
Shi X, Wang X, Li Z, Zhu Q, Tang W, Ge S, Luo J. Nucleotide substitution pattern in rice
paralogues: implication for negative correlation between the synonymous substitution rate and
codon usage bias. Gene. 2006 Jul 19;376(2):199-206. Epub 2006 Mar 18. (IF = 2.694)
4.
Wu J, Mao X, Cai T, Luo J, Wei L. KOBAS server: a web-based platform for automated
annotation and pathway identification. Nucleic Acids Research. 2006 Jul 1;34:W720-4. （IF =
7.55）
5.
Ji X, Li W, Song J, Wei L, Liu XS. CEAS: cis-regulatory element annotation system. Nucleic
Acids Research. 2006 Jul 1;34:W551-4. （IF = 7.55）
6.
Gao G, Zhong Y, Guo A, Zhu Q, Tang W, Zheng W, Gu X, Wei L, Luo J, “DRTF: Database of Rice
Transcription factors”, Bioinformatics, 2006 May 15;22(10):1286-7 （IF = 6.02）
7.
Mao, X., Cai, T., Olyarchuk, J.G., Wei, L, “Automated Genome Annotation and Pathway
Identification Using the KEGG Orthology (KO) As a Controlled Vocabulary”, Bioinformatics,
21(19): 3787–93, 2005 （IF = 6.02）
8.
Wu, X., Walker, M.G., Luo, J., Wei, L, “GBA server: EST-based digital gene expression profiling”,
Nucleic Acids Research, 33:W673-6, 2005 （IF = 7.55）
9.
Yin YB, Zhang Y, Yu P, Luo JC, Jiang Y, Li SG. Comparative study of apoptosis-related gene loci
in human, mouse and rat genomes. Acta Biochim Biophys Sin (Shanghai). 2005 May;37(5):341-8
(IF = 0.505)
10. Wang X, Shi X, Hao B, Ge S, Luo J. Duplication and DNA segmental loss in the rice genome:
implications for diploidization. New Phytol. 2005 Mar;165(3):937-46 (IF = 4.285)
11. Guo, A., He, K., Liu, D., Bai, S., Gu, X., Wei, L, Luo, J., “DATF: a Database of Arabidopsis
Transcription Factors”, Bioinformatics, 21(10):2568-9, 2005 （IF = 6.02）
12. Wang J, He X, Ruan J, Dai M, Chen J, Zhang Y, Hu Y, Ye C, Li S, Cong L, Fang L, Liu B, Li S,
Wang J, Burt DW, Wong GK, Yu J, Yang H, Wang J. ChickVD: a sequence variation database for
the chicken genome. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D438-41. （IF = 7.55）
13. Wang J, Xia Q, He X, Dai M, Ruan J, Chen J, Yu G, Yuan H, Hu Y, Li R, Feng T, Ye C, Lu C,
Wang J, Li S, Wong GK, Yang H, Wang J, Xiang Z, Zhou Z, Yu J. SilkDB: a knowledgebase for
silkworm biology and genomics. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D399-402.
（IF = 7.55）
14. Chen Y, Zhang Y, Yin Y, Gao G, Li S, Jiang Y, Gu X, Luo J. SPD--a web-based secreted protein
database. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D169-73. （IF = 7.55）
作为合作单位发表 8 篇:
1． Lu XC, Gong HQ, Huang ML, Bai SL, He YB, Mao X, Geng Z, Li SG, Wei L, Yuwen JS, Xu
ZH, Bai SN, Molecular analysis of early rice stamen development using organ-specific gene
expression profiling, Plant Molecular Biology, 2006, 61:845–861. (IF = 3.328)
2． Shi YH, Zhu SW, Feng JX, Mao X, Zhang L, Cheng J, Wei LP, Wang ZY, Zhu YX,
“Transcriptome Profiling, Molecular Biological and Physiological Studies Revealed a Major
Role of Ethylene in Cotton Fiber Cell Elongation”, Plant Cell, 2006 Mar;18(3):651-64. （IF =
11.09）
3． Zhou M, Xu H, Wei X, Ye Z, Wei L, Gong W, Wang Y, Zhu Z. Identification of a
glyphosate-resistant mutant of rice 5-enolpyruvylshikimate 3-phosphate synthase using a
directed evolution strategy. Plant Physiol. 2006 Jan;140(1):184-95. （IF = 6.11）
4． Li J, Li X, Guo L, Lu F, Feng X, He K, Wei L, Chen Z, Qu LJ, Gu H. A subgroup of MYB
transcription factor genes undergoes highly conserved alternative splicing in Arabidopsis and
rice. J Exp Bot. 2006;57(6):1263-73. （IF = 3.34）
5． Feng JX, Liu D, Pan Y, Gong W, Ma LG, Luo JC, Deng XW, Zhu YX. An annotation update
via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or
environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family.
Plant Mol Biol. 2005 Dec;59(6):853-68.
6． Cheng HP, Wei S, Wei LP, Verkhratsky A. Calcium signaling in physiology and
pathophysiology. Acta Pharmacol Sin. 2006 Jul;27(7):767-72. （IF = 1.12）
7． Dai X, Chen Q, Lian M, Zhou Y, Zhou M, Lu S, Chen Y, Luo J, Gu X, Jiang Y, Luo M, Zheng
X. Systematic high-yield production of human secreted proteins in Escherichia coli. Biochem
Biophys Res Commun. 2005 Jul 1;332(2):593-601
8． Zhong Y, Guo A, Li C, Zhuang B, Lai M, Wei C, Luo J, Li Y. Identification of a naturally
occurring recombinant isolate of Sugarcane mosaic virus causing maize dwarf mosaic disease.
Virus Genes. 2005 Jan;30(1):75-83.