TABLE S5
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TABLE S5. Effects of quantitative trait loci for animal crosses. Species Acyrthosiphon pisum pisum Acyrthosiphon pisum pisum Acyrthosiphon pisum pisum Acyrthosiphon pisum pisum Acyrthosiphon pisum pisum Acyrthosiphon pisum pisum Acyrthosiphon pisum pisum Caenorhabditis elegans Caenorhabditis elegans Caenorhabditis elegans Caenorhabditis elegans Caenorhabditis elegans Caenorhabditis elegans Caenorhabditis elegans Caenorhabditis elegans Drosophila mauritiana X D. sechellia Drosophila mauritiana X D. simulans Drosophila mauritiana X D. simulans Drosophila mauritiana X D. simulans Drosophila mauritiana X D. simulans Drosophila mauritiana X D. simulans Drosophila mauritiana X D. simulans Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster cross intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra inter inter inter inter inter inter inter intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra Trait alfalfa race - fecundity on alfalfa alfalfa race - fecundity on clover alfalfa race - acceptance of alfalfa clover race - fecundity on alfalfa clover race - fecundity on clover clover race - acceptance of alfalfa clover race - acceptance of clover mean lifespan fertility early fertility fraction age of first reproduction population growth lifespan body length fertility female pheromones anal plate bristle number clasper bristle number sex comb tooth number fifth sternite bristle number anal plate area posterior lobe area lifespan - males lifespan - females sternopleural bristle number, 18°C, males sternopleural bristle number, 25°C, males sternopleural bristle number, 29°C, males sternopleural bristle number, 18°C, females sternopleural bristle number, 25°C, females sternopleural bristle number, 29°C, females abdominal bristle number, 18°C, males abdominal bristle number, 25°C, males abdominal bristle number, 29°C, males abdominal bristle number, 18°C, females abdominal bristle number, 25°C, females abdominal bristle number, 29°C, females male lifespan - low density male lifespan - high density female lifespan - low density female lifespan - high density sex comb tooth number Trait Type life history life history life history life history life history life history life history life history life history life history life history life history life history morphology life history physiology morphology morphology morphology morphology morphology morphology life history life history morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology life history life history life history life history morphology No. QTLs 4 4 5 1 3 3 1 1 2 1 4 3 8 1 3 6 6 1 2 1 3 8 4 1 5 5 4 5 4 6 4 6 6 6 5 6 3 2 3 1 2 Largest effect size 0.8 -1.46 0.78 1.46 -1.29 24 25 23 33 46.2 53.6 -29.2 50.2 -15.9 1.22 -1.52 31.26 32.24 18.23 35 30.49 13.11 23.32 26.57 13.95 16.2 15.21 20.58 4.79 6.18 -4.2 -5.24 0.34 Minor QTL2 Minor QTL3 Minor QTL4 Minor QTL5 Minor QTL6 Minor QTL7 Minor QTL8 -1.02 0.9 -0.87 0.045 0.85 -0.7 0.06 14 13 -3.5 0.61 0.11 0.06 0.12 -11.8 21.7 15 14.3 46.1 -6.9 -0.69 15.6 -14.8 -0.63 -6.9 -0.6 -4.9 -15.3 6.83 7.89 6.85 13.01 4.67 3.64 7.38 5.56 6.89 3.27 4.02 3.21 -2.89 3.45 -3.76 7.71 13.83 8.15 2.86 14.55 6.1 21.51 6.59 10.32 10.78 2.68 8.79 -1.48 9.96 9.66 8.37 16.82 11.06 7.73 2.47 19.65 3.28 12.12 3.81 6.31 7.87 12.35 0.1 0.15 -21.5 -0.23 3.88 4.56 7.67 10.84 8.04 13.5 12.48 15.21 19.84 4.79 4.57 10.83 5.52 -10.5 -11.2 Minor QTL9 Minor QTL10 Minor QTL11 Minor QTL12 Minor QTL13 Minor QTL14 Minor QTL15 Minor QTL16 Minor QTL17 Minor QTL18 Minor QTL19 Method of measurement SD SD SD SD SD PVE PVE PVE %D %D %D %D %D %D SD SD PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE absolute absolute absolute absolute absolute Reference (Hawthorne & Via 2001) (Hawthorne & Via 2001) (Hawthorne & Via 2001) (Hawthorne & Via 2001) (Hawthorne & Via 2001) (Hawthorne & Via 2001) (Hawthorne & Via 2001) (Shook & Johnson 1999) (Shook & Johnson 1999) (Shook & Johnson 1999) (Shook & Johnson 1999) (Shook & Johnson 1999) (Ayyadevara et al. 2001) (Knight et al. 2001) (Knight et al. 2001) (Coyne & Charlesworth 1997) (True et al. 1997) (True et al. 1997) (True et al. 1997) (True et al. 1997) (True et al. 1997) (True et al. 1997) (Nuzhdin et al. 1997) (Nuzhdin et al. 1997) (Gurganus et al. 1998) (Gurganus et al. 1998) (Gurganus et al. 1998) (Gurganus et al. 1998) (Gurganus et al. 1998) (Gurganus et al. 1998) (Gurganus et al. 1998) (Gurganus et al. 1998) (Gurganus et al. 1998) (Gurganus et al. 1998) (Gurganus et al. 1998) (Gurganus et al. 1998) (Leips & Mackay 2000) (Leips & Mackay 2000) (Leips & Mackay 2000) (Leips & Mackay 2000) (Nuzhdin & Reiwitch 2000) Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila melanogaster Drosophila pseudoobscura X D. persimilis Drosophila pseudoobscura X D. persimilis Drosophila simulans X D. mauritiana Drosophila simulans X D. mauritiana Drosophila simulans X D. melanogaster Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila simulans X D. sechellia Drosophila yakuba X D. santomea Gasterosteus aculeatus Gasterosteus aculeatus Gasterosteus aculeatus Gasterosteus aculeatus Gasterosteus aculeatus Laupala kohalensis X L. paranigra intra intra intra intra intra intra intra intra intra intra intra inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter inter male lifespan female lifespan hindgrooming (autonomic) quivering (autonomic) grasping (autonomic) self-righting (autonomic) cuticular hydrocarbon profile reproductive success ovariole number courtship song - interpulse interval sternopleural bristle number - line 2 courtship song - intrapulse frequency courtship song - interpulse interval posterior lobe size/shape shape of posterior lobe female pheromones male pheromone octanoic acid resistance - males octanoic acid resistance - females posterior lobe area - sim BC posterior lobe area - sec BC adj PC1 (posterior lobe shape) - sim BC adj PC1 (posterior lobe shape) - sec BC sex comb tooth number - sim BC sex comb tooth number - sec BC testes length - sim BC testes length - sec BC cyst length - sim BC cyst length - sec BC tibia length - sim BC tibia length - sec BC testicular atrophy - sim BC testicular atrophy - sec BC absence of cysts - sim BC absence of cysts - sec BC quantity of sperm - sim BC quantity of sperm - sec BC larval hairs larval toxin resistance abdominal pigmentation number of short gill rakers lateral plate number dorsal spine 1 dorsal spine 2 pelvic spine length singing pulse rate variation life history life history behavior behavior behavior behavior physiology life history life history behavior morphology behavior behavior morphology morphology physiology physiology physiology physiology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology life history life history life history life history life history life history morphology physiology morphology morphology morphology morphology morphology morphology behavior 23 23 2 2 2 2 1 2 2 3 1 2 3 9 19 5 5 4 5 11 11 9 9 4 4 7 7 3 3 5 5 3 3 4 4 3 3 1 3 3 2 2 2 2 1 3 -0.6 -0.58 -0.73 0.51 100 -0.016 -2.98 24.9 31 30 37.3 15.9 14.9 -0.3 0.2 0.55 0.44 -0.008 -2.71 19.4 9.7 6.8 34.1 13.6 4.4 24.4 14.7 4.5 21 25 -25.5 -36.9 63.6 27.9 53.2 -58.1 72.6 46.1 -37.3 34.1 44.5 -34.9 -0.285 -0.022 -0.453 -0.315 -1.165 -0.47 100 29 18 18 -3.5 -6.1 -1.6 -6 -13.5 -34.4 12 37 -35.8 23.8 -9.6 5.8 -2.79 -0.018 -0.401 -0.103 -0.943 0.255 5 9 -18.5 -19.7 -9.3 -7.1 15.9 -0.4 -5.3 35 -22.3 31.9 40.6 19.1 0.187 -0.007 -0.235 -0.306 -0.228 0.448 15.4 10 1.53 2.72 3.35 9 14.9 8.5 1.42 2.57 6.5 6.1 6.6 0.1 7 6 -7 -13.6 1.6 24.5 39.3 -16.5 35.4 -15.8 34.1 2.8 10 0.063 0.229 5.7 3.8 15.5 6.7 15.8 3.3 12 -6.5 -28.8 36.5 15.6 21.7 -19.2 34 -13.5 3.7 -3.6 38.4 -6.3 51.8 -15.3 44.7 -30.3 58.5 40.9 27.2 -33.3 10.4 2.5 -15.7 -22.1 43.1 5.5 11.8 -0.7 -14.89 -30.7 30 19.1 3.2 -9.5 -36.3 4.5 -6.7 -23.3 7.7 12.7 0.7 2.6 4.3 4.2 1.3 4.4 absolute absolute SD SD SD SD %D SD SD PVE PVE PVE PVE %D PVE %D %D %D %D %D %D %D %D %D %D %D %D %D %D SD SD SD SD SD SD %D %D PVE PVE PVE PVE PVE %D (Vieira et al. 2000) (Vieira et al. 2000) (Ashton et al. 2001) (Ashton et al. 2001) (Ashton et al. 2001) (Ashton et al. 2001) (Takahashi et al. 2001) (Wayne et al. 2001) (Wayne et al. 2001) (Gleason et al. 2002) (Robin et al. 2002) (Williams et al. 2001) (Williams et al. 2001) (Liu et al. 1996) (Zeng et al. 2000) (Coyne 1996b) (Coyne 1996a) (Jones 1998) (Jones 1998) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Macdonald & Goldstein 1999) (Sucena & Stern 2000) (Jones 2001) (Llopart et al. 2002) (Peichel et al. 2001) (Peichel et al. 2001) (Peichel et al. 2001) (Peichel et al. 2001) (Peichel et al. 2001) (Shaw & Parsons 2002) Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra intra weight at 1 week weight at 2 weeks weight at 3 weeks weight at 4 weeks weight at 5 weeks weight at 6 weeks weight at 7 weeks weight at 8 weeks weight at 9 weeks weight at 10 weeks early growth middle growth six-week growth late growth body size coronoid height superior condylar length condylar width inferior condylar length condylar base length posterior angular height posterior angular length anterior angular length superior angular length posterior corpus height coronoid base length posterior-inferior basal length anterior-inferior basal length inferior incisor alveolus length incisor alveolus width superior incisor alveolus length anterior corpus height molar alveolus height superior molar alveolus length inferior molar alveolus length superior coronoid length body weight abdominal fat weight abdominal fat percentage liver weight kidney weight spleen weight growth rate left-right centroid size (mandibular) assymetry of centroid size (mandibular) unsigned assymetry of centroid size morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology physiology physiology physiology physiology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology morphology life history morphology morphology morphology 7 10 16 13 16 15 14 14 16 17 11 12 14 12 11 12 8 5 9 11 8 8 5 4 8 12 5 11 5 5 4 8 11 7 8 9 10 8 4 5 5 4 20 11 2 1 9.6 8.8 15.6 18.3 18 18 16.3 12.7 18.4 15.2 11.3 8.5 11.1 8.4 -0.28 16.5 4.1 10.5 9.3 4.9 16.4 6.6 3.6 3.9 5.9 14.1 3.8 6.1 4.4 13.3 7.6 14.5 6.5 7 7.4 9.9 23.1 18.1 10.2 24.7 13.4 23 11 8.78 2.24 2.38 5.4 4.5 6.5 1.9 2 2.7 5.2 5.1 6.3 5.3 5.3 4.8 4.1 1.9 -0.17 3.4 3.1 2.7 2.8 3.8 2 2.8 1.9 1.6 1.8 3.9 2.7 3.3 2.4 3.6 1.7 2.9 3.7 3.5 5.5 4.6 7.1 4 8.3 4.4 8.2 7.3 2.3 3.2 5.8 5.3 4 6.3 2.3 6.7 3 7.2 2.8 7.7 6.8 2.6 0.18 3.2 3.8 2.6 5.1 1.9 7 2.5 3.5 1.9 2.8 1.5 3.5 2.9 4.4 3.2 6.5 3.2 3.2 1.9 3.4 5.2 5.1 13.4 4.7 6.6 7.3 8.5 7.6 2.5 2.7 2.3 2.4 8.2 5.1 3 6.2 3.1 3.5 3.4 1.8 2.4 0.18 2.5 2.1 9.6 2.5 2 2.6 2 2.6 3.8 4.9 6.7 2.1 3.9 1.8 2.4 1.8 2.3 2.9 2.8 2.4 3.4 7 3.9 5.3 9.7 6.2 10.7 9.2 2.1 2.2 7.8 5.9 2.5 12.4 6.4 9 2.6 4.5 3.6 5.4 3.4 -0.21 9.2 3.8 2.5 4.4 2.5 3.2 3.8 2.3 3.8 8.6 10.2 8 3.1 4.7 12 10.1 16.2 12.4 2.4 3.9 6 2 -0.19 2.5 2.8 1.3 1.9 2.9 6.6 9.1 11.5 16.3 8.7 13.6 6.3 2 4.9 8.2 2.4 -0.21 5.7 1.8 2.8 4.4 13.7 8.2 12.6 3.5 10.2 1.5 10.4 1.8 2.3 10.6 2.4 0.24 2.3 1.7 1.5 12.7 1.6 12.3 17.8 3.4 3.3 4 11.7 2.9 2.4 3.4 2.4 -0.2 2 2.1 1.4 2.3 17.7 3 3.6 3.4 3.2 15 1.3 2.1 2.6 4.4 0.17 2.8 2.2 4.4 1.9 2.4 2.1 2.7 2.1 1.8 1.6 1.9 3.5 2.9 0.22 1.5 6.5 4.4 3.4 2.3 3.1 4 5.2 2.1 2.2 1.8 2.2 3.1 6.7 4.8 5 2.8 3.3 2.9 1.6 2.6 2.4 1.5 2.7 2.6 3.2 2.8 1.9 10.6 2.8 6.1 2.2 4.7 4.9 2.9 3.5 3.7 2.5 6.8 2.7 2.4 2.8 7.3 3 4.1 5.6 3.1 3.1 6.6 3.2 4.3 8.3 3.6 3.2 2.5 2.5 3.3 10.1 7.7 2.7 2.3 3.3 2.9 3.5 1.6 2.6 4.2 2.9 2.5 0.2 3.3 2.9 2.11 3.76 3.38 3.58 2.15 6.57 3.93 4.66 3.86 6.8 4.9 3.17 3.4 6.4 4.4 3.7 2.1 1.8 2 3.6 2.3 2.6 4.4 3.4 4.3 2.2 4.3 2.9 1.5 1.3 1.9 2.1 1.7 2.8 4 1.8 2.6 2.5 3.4 2.2 3.2 5.1 1.9 3.4 4.3 3.3 3 1.5 3.4 6.6 3.3 2.1 PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE SD PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE PVE (Cheverud et al. 1996) (Cheverud et al. 1996) (Cheverud et al. 1996) (Cheverud et al. 1996) (Cheverud et al. 1996) (Cheverud et al. 1996) (Cheverud et al. 1996) (Cheverud et al. 1996) (Cheverud et al. 1996) (Cheverud et al. 1996) (Cheverud et al. 1996) (Cheverud et al. 1996) (Cheverud et al. 1996) (Cheverud et al. 1996) (Keightley et al. 1996) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Cheverud et al. 1997) (Brockmann et al. 1998) (Brockmann et al. 1998) (Brockmann et al. 1998) (Brockmann et al. 1998) (Brockmann et al. 1998) (Brockmann et al. 1998) (Vaughn et al. 1999) (Klingenberg et al. 2001) (Klingenberg et al. 2001) (Klingenberg et al. 2001) Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Mus musculus Nasonia giraulti X N. vitripennis Oncorhynchus mykiss Oncorhynchus mykiss Oncorhynchus mykiss intra intra intra intra intra intra intra inter intra intra intra testis weight seminal vesicle weight aggression maternal performance early growth early growth (maternal effect) molar centroid size wing size time to hatch - pooled embryonic length - pooled weight at swim-up - pooled morphology morphology behavior behavior physiology physiology morphology morphology life history morphology morphology 5 1 2 2 5 4 3 2 3 2 2 20.7 24.2 17.5 11.9 13.5 9.2 6.18 3.02 9.53 6.57 44 14.7 13.1 15.3 4.61 2.49 9.07 5.46 1.88 9.13 2.14 3 5.21 1.82 4.6 9.5 10.9 5.3 PVE PVE PVE PVE PVE PVE %D PVE PVE PVE (Le Roy et al. 2001) (Le Roy et al. 2001) (Brodkin et al. 2002) (Peripato et al. 2002) (Wolf et al. 2002) (Wolf et al. 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