Supplementary Information Supplementary Table 1 Wt/Wt Wt/Wt Wt/CT Wt/CT CT/CT CT/CT Wt/p53– p53–/p53– Wt/p53– p53–/p53– Wt/p53– p53–/p53– normal (1) normal (2) normal (10) normal (3) abnormal (3) abnormal (3) Genetic ablation of p53 does not rescue embryonic lethality in Dido3CT-RFP mice. Intercrosses between heterozygous female Dido3CT-RFP mice lacking one copy of p53 (Wt/CT; Wt/p53–) and male p53 knockout mice heterozygous for Dido3CT-RFP (Wt/CT; p53–/p53–) yielded no viable pups homozygous for the Dido3 mutation (CT/CT). Embryos from three intercrosses were analyzed for morphological abnormalities at E8.5. Numbers in parentheses indicate the number of embryos analyzed. 1 Supplementary Figure 1 To generate a Dido3-specific loss-of-function mouse mutant, we constructed a targeting vector that replaced exon 16 of the Dido locus with a red fluorescence protein (RFP) cassette in-frame (top), which specifically disrupts expression of the Dido3 isoform after homologous recombination in murine ES cells (Dido3CT-RFP). The targeting construct was made by bacterial artificial chromosome (BAC) recombineering. Briefly, we used a 72-base primer with 51 bases identical to the sequence of Dido3 exon 16, into which we introduced the RFP cassette in-frame and 21 bases identical to the RFP cassette. The second primer was also 72 bases long, with 51 bases identical to the Dido3 3’-UTR and 21 identical to the neomycin/kanamycin cassette. We amplified the product by PCR with proofreading Taq and transfected the product into the DY380 E. coli strain containing the pBeloBac with the Dido gene and a thermosensitive phage. After thermoinduction and antibiotic selection, we obtained the recombined BAC clone. We repeated the method with different primers to obtain a targeting vector by gap repair. R1 ES cells were electroporated with the linearized vector; G418- and gancyclovir-resistant ES cell clones were isolated and analyzed. Genomic Southern blotting (bottom) confirmed correct and single insertion of the vector in the ES cell clone. 2 Supplementary Figure 2 Sections from Wt/Wt and CT/CT embryos at E7.5 were assayed for Dido3 expression (Dido3positive cells, red dots). Nuclei were DAPI-counterstained (blue). Dido3 is expressed in Wt/Wt embryos; CT/CT embryos do not stain for Dido3. Red dots outside the embryo are indicative of Dido3 expression in heterozygous maternal tissue. Arrowheads indicate presence (Wt/Wt) or absence (CT/CT) of Dido3 expression in the embryonic ectoderm. 3