1 Large Biological Molecules Large Bio Molecules / Macromolecules Class Work 1. What is organic chemistry? 2. How many valence electrons does carbon have? 3. Carbon-Hydrogen bonds are polar or non-polar? 4. Define saturated and unsaturated hydrocarbons. 5. If a hydrocarbon has a double bond is it saturated or unsaturated? 6. What is a macromolecule? 7. Carbohydrates are made from which monomer? 8. Which polymer are nucleotides the monomer for? Homework 9. What is the maximum number of atoms a carbon atom can bond to? 10. What kind of bonds do carbon atoms form with other atoms? 11. What two kinds of atoms are all hydrocarbons made of? 12. Are hydrocarbons soluble in water? Explain. 13. To what type of hydrocarbon can additional atoms be added? How? 14. What process allows monomers to join together to form polymers? 15. Proteins are made from which monomer? Amino Acids / Proteins Class Work 16. What component of an amino acid differs between each type of amino acid? 17. When a few amino acids bond together they form what? 18. How many levels of structure can a protein have? 19. What is the primary structure of a protein? 20. How does a protein get its secondary structure? 21. A protein with a 3D structure is characteristic of what structural level? 22. List the seven classes of proteins. 23. Hair is an example of what class of protein? Homework 24. How many amino acids are used to construct most proteins? 25. What three components compose an amino acid? 26. When is a peptide chain considered a protein? 27. What determines the function or the job of a specific protein? 28. When a protein loses its shape and therefore its function, this is referred to as what? 29. What two shapes are seen in the secondary structure of a protein? 30. How does the tertiary structure of a protein differ from the secondary structure? 31. What is the quaternary structure of a protein? 32. Antibodies are an example of what class of protein? njctl.org Biology Large Biological Molecules 2 Carbohydrates / Polysaccharides Class Work 33. What is another name for a simple carbohydrate? 34. Name two common simple sugars. 35. What is a polysaccharide? 36. How can cells obtain energy from a polysaccharide? 37. Where can you find cellulose? Homework 38. What is a carbohydrate? 39. What characteristic of sugars makes them soluble in water? 40. What jobs can simple sugars do? 41. What is sucrose and how is it made? 42. Compare and contrast starch and glycogen. Nucleotides / DNA / RNA Class Work 43. What monomers make nucleic acid? 44. What is different about the sugars and bases of RNA and DNA? 45. What shape(s) do DNA form? 46. What bases bond together in DNA? 47. Why is RNA essential to DNA? Homework 48. What are the three components of a nucleotide? 49. What determines the shape of RNA? 50. What bases in RNA bond together? 51. Give two reasons why DNA is better for storing genetic information than RNA? Lipids Class Work 52. How can a molecule be amphiphilic? 53. What functions do lipids have? 54. How are trans fats made? 55. Phopholipds, waxes, and steroids are all types of which biological molecule? 56. Explain how detergent is able to remove a stain from your clothes. Homework 57. How do lipids differ from other large biological molecules? 58. Define a phospholipid. 59. Explain what makes a phospholipid amphiphilic. 60. What process allows the glycerol to bond with the fatty acid chain? 61. What are the differences between saturated and unsaturated lipids? 62. Why are trans fats a health hazard? njctl.org Biology Large Biological Molecules 3 Free Response 1. Organic chemistry is the study of compounds that contain carbon. a. Describe the properties of a carbon atom that make it ideally suited to produce varied carbon skeletons. b. Identify the four major biological monomers that carbon is able to form and corresponding polymers if any. 2. There are seven classes of proteins that all serve different functions, and surprisingly all proteins are made of only 20 amino acids. a. Describe and distinguish between the four structural levels of proteins. b. Describe the effects that an increase in temperature would have on a protein. njctl.org Biology Large Biological Molecules 4 3. The process of linking monomers to make polymers is essential to the formation of many of life’s larger molecules. a. Identify a major carbohydrate monomer that is used to form polymers and describe the process that allows these monomers to form polymers. b. Identify three polysaccharides, tell where they can be found, and the function of each. 4. Nucleic acids are one of the major biological molecules found in all living things a. Identify the monomer form of nucleic acids and describe the three components of that monomer. b. Compare and contrast the structure and basic function of RNA and DNA. Include which is more stable and why. njctl.org Biology Large Biological Molecules 5 5. Food labels sometimes list “partially hydrogenated vegetable oil” as an ingredient. a. What does this mean? b. Would this food be considered more or less healthful? Explain. 6. Although all four classes of biological molecules are composed of carbon, each class has its own specific properties. a. Describe a simple experiment that would allow you to distinguish if a simple white substance was a lipid or a carbohydrate. b. Describe a simple experiment that would allow you to determine if a warm beaker of yellow liquid is a saturated or unsaturated fatty acid. njctl.org Biology Large Biological Molecules 6 Large Biological Molecules Answers 1. The study of organic compounds 2. Four 3. Non-polar 4. In saturated hydrocarbons each carbon is bonded to four other atoms with single bonds. In unsaturated hydrocarbons some of the carbons are double or triple bonded to other atoms. 5. Unsaturated 6. Large molecules with complex structures that are composed of smaller molecules or monomers 7. Monosaccharides 8. Nucleic Acids 9. 4 10. Covalent Bonds 11. Carbon & Hydrogen 12. Hydrocarbons are hydrophobic or non-polar so they are not soluble in water 13. Unsaturated hydrocarbons. By breaking the double or triple bonds and bonding to another atom with only a single bond. 14. Dehydration Synthesis 15. Amino Acids 16. The side chain or the R-group 17. Peptide chains 18. 4 19. A peptide chain of 50 or more amino acids 20. Hydrogen bonding between the amino and carboxyl groups of amino acids along the polypeptide chain 21. Tertiary Structure 22. Structural, contractile, storage, defense, transport, signaling, enzymatic 23. Structural njctl.org Biology 24. 20 25. amine group, carboxyl group, side chain 26. when it has 50 or more amino acids 27. the shape of the protein 28. denaturation 29. alpha helix and pleated sheet 30. The tertiary structure is the overall 3D shape that is created by bonds between R-groups, whereas the secondary structure does not involve any bonding of the R-groups only bonds between the amino and carboxyl groups. 31. The quaternary structure consists of more than one polypeptide chain. 32. Defense 33. Sugar or saccharide 34. Glucose & Fructose 35. A chain of monosaccharides 36. Break the polysaccharide apart into monosaccharides through hydrolysis. 37. Plant cell walls 38. Compounds consisting of carbon, hydrogen, and oxygen 39. Their hydroxyl groups 40. Provide energy for work, create carbon backbones, comprise larger carbohydrates 41. Sucrose is a disaccharide made through dehydration synthesis of glucose and fructose. 42. Starch can be branched or unbranched and is used for energy storage in plants whereas glycogen is highly branched and is used for energy storage in animals. 43. Nucleotides Large Biological Molecules 7 44. RNA has an extra hydroxyl group 45. DNA only forms a double helix 46. Guanine bonds with cytosine and adenine bonds with thymine 47. DNA is not capable of bringing the information it stores to where it can be used in the cell, but RNA is capable of taking the information from DNA and bringing it to where it can be used in the cell 48. A 5-carbon sugar, a nitrogenous base, and a phosphate group 49. The sequence of the nucleotide bases determines the shape because the hydrogen bonding between the bases create the shape. Changing the order of the bases would change the shape. 50. Adenine bonds with uracil and guanine bonds with cytosine 51. The double helix shape keeps the bases protected on the inside of the molecule. Also, thymine is a more stable nucleotide than uracil. 52. An amphiphilic molecule has one end that is attracted to water and one end that is repelled by water. 53. Energy storage, composing cell membranes, and being involved in metabolic activities 54. Trans fats are made through a chemical process that takes unsaturated fatty acids and makes them saturated. 55. Lipids 56. The hydrophobic end of the detergent is attracted to the stain and the hydrophilic end is attracted to the water. As the njctl.org Biology water bonds and pulls at the hydrophilic end, the hydrophobic end bonds and pulls the stain up out of the fabric until it is all released into the water. 57. Lipids do not form polymers 58. A phospholipid is an amphiphilic molecule composed of one glycerol and two fatty acids. 59. The glycerol end of the phospholipid is hydrophilic and the fatty acid end is hydrophobic. 60. Dehydration Synthesis 61. Saturated lipids have the maximum number of hydrogen bonds possible and only have single bonds. They are solid at room temperature. Unsaturated lipids have one or more double bonds and are liquid at room temperature. 62. Trans fats stay in our bloodstream longer and more likely to cause plaque formation, which leads to things like heart attacks. Large Biological Molecules 8 Free Response 1. a. Carbon has four valence electrons and is able to bond with up to four other atoms. Carbon can also form double and triple bonds with other atoms. b. The monomers are amino acids, monosaccharides, nucleotides, and lipids. The polymers are: amino acids- proteins, monosaccharides to carbohydrates, nucleotides to nucleic acids, lipids have no polymer form. 2. 3. 4. a. The primary structure of proteins is a polypeptide chain consisting of 50 or more amino acids. Alpha helices and pleated sheets that are formed by hydrogen bonding between the amino and carboxyl groups of amino acids in the peptide chain characterize the secondary structure. The tertiary structure is the overall 3D structure of a protein formed by bonds between the R-groups; it is at this level that proteins get their function. The quaternary structure of a protein is formed when two or more polypeptide chains bond together, not every protein has a quaternary structure. b. If a protein was heated it would experience denaturation which is the loss of shape and function of a protein. a. A major carbohydrate monomer that is used to form polymers is glucose. Glucose monomers are able to bond together through dehydration synthesis in which a hydroxyl group is removed from one glucose molecule and a hydrogen atom is removed from the other to allow these two monomers to join together and create a water molecule in the process. b. Three polysaccharides are starch, glycogen, and cellulose. Starch and cellulose are both found in plants and glycogen is found in animals. Starch is used for energy storage in plants, glycogen is used for energy storage in animals, and cellulose is used for structural support in plants. a. Nucleic acids are made of nucleotide monomers. Each nucleotide consists of a 5-carbon sugar, a phosphate group, and a nitrogenous base. b. RNA is made with the sugar ribose and the bases adenine, guanine, cytosine, and uracil. RNA is single stranded and can form many different shapes. DNA is made with the sugar deoxyribose and the bases adenine, guanine, cytosine, and thymine. DNA can only form a double helix shape. DNA is more stable than RNA because of its double helix and having thymine which is more stable than uracil, for this reason DNA is used to store the genetic code however RNA is njctl.org Biology Large Biological Molecules 9 5. 6. essential for bringing that genetic code to parts of the cell where it can be processed and used. a. Partially hydrogenated vegetable oil is an example of an unsaturated lipid that has had more hydrogen atoms added to it to make it more saturated. When this happens this actually creates trans fats. b. This food would be considered less healthful because when adding hydrogen to an unsaturated lipid you create trans fats which stay in the blood stream for a long time and can lead to health complications such as plaque buildup which can lead to heart attacks. a. A simple experiment that would allow me to distinguish whether the substance was a lipid or carbohydrate would be to add the white substance to a glass of water and stir to see if it dissolves. If the substance dissolves in the water than it is a carbohydrate (think adding sugar to iced tea), if it does not dissolve than it is a lipid because lipids are hydrophobic or amphiphilic and are not easily soluble in water. b. A simple experiment that would allow me to determine if the warm yellow liquid was a saturated or unsaturated fatty acid would be to allow the beaker to cool to room temperature and see if the substance changed to a solid or remained a liquid. If the substance solidified it would be a saturated fatty acid and if it remained a liquid it would be an unsaturated fatty acid as the state of the substance at room temperature is a characteristic feature njctl.org Biology Large Biological Molecules 10 njctl.org Biology Large Biological Molecules