National Research Program of Genomic Medicine Microarray & Gene Expression Analysis Core Facility Affymetrix Chips Sample Submission Form By NRPGM Microarray & Gene Expression Core Facility Version 1.2 June /2004 Project Code: ___________ Sample Submission Form (please fill the areas below) PI’s Name: _________________ Name: ________________ Department: ______________Institute: _______________ Phone: ________________ Fax: ________________ Email: ____________________ Address: ________________________________________________________________ Name of the sample(s): ___________________________________________________ Sample type: □Total RNA □ mRNA □ cRNA Service ID/Array type: ____________________________________________________ Date of sample submission: _______________________________________________ (http://genmed.sinica.edu.tw/microarray/servicelist) RNA quantification and quality control performed by the customer: The criteria of RNA integrity and quantity was shown on http://genmed.sinica.edu.tw/ microarray/RNA_QC.html RNA Integrity Test: □ Electrophoresis gel result of the RNA sample(s) □ Agilent 2100 Bioanalyzer graphic result 1 2 3 4 5 Please paste your image here For Electrophoresis: Please refer to the image at the left for the layout of the gel Lane 1:100 bp DNA ladder Lane 2: acceptable quality Lane 3: heavily degraded total RNA Lane 4: slightly degraded and DNA- contaminated sample Lane 5: 1 Kb DNA ladder For Bioanalyzer: Please paste the graphic result to show there is no degradation. ** The 28S and 18S eukaryotic ribosomal RNAs should exhibit a near 2:1 ratio. In RNA samples that have been degraded, this ratio will be reversed since the 28S rRNA. For electrophoresis, the O.D. A260 /A280 ratio should be close to 2.0 for pure RNA (ratios between 1.9 and 2.1 are acceptable). For 2100 Bioanalyzer, the ratio of 28S/18S rRNA should be more than 2* w/o degradation. (*By case) 2 Project Code: ___________ RNA quantity and purity test At least 20μg total RNA or 2μg mRNA is required for each chip. Total RNA concentration should be over 1 μg/μl Sample ID Concentration OD260/OD280 Ratio 28S/18S rRNA ratio (μg/μl) (for spectrometer) (for Agilent system) P.I. Signature: Comment: (official only) ___ Approval □YES □NO Signature: ___ Sample transportation: Deliver the sample in a dry iced-container, together with [Sample Submission Form] to 台北市北投區 112 石牌立農街二段 101 號 2F(陽明大學致和新村 101 號) 「微陣列與基因表現分析核心設施」收 Please inform us the delivery by phone (02) 2826-7337 (02) 2826-7000 ext 5125 by fax (02) 2826 1444, or by e-mail to nrpgm_ec@ym.edu.tw 3