12 Journal of Jazan University - Applied Sciences Branch Vol.3 No.1 Jan. 2014 (Safar 1435 H) Isolation and Identification of Protease Producing ………. Isolation and Identification of Protease Producing Bacterial Strain From Jazan Province, KSA M. A. Al Abboud Biology Department, Faculty of Science, Jazan Uninersity, KSA Abstract Ten bacterial strains were isolated from hot and salted soil of Jazan region, Kingdom of Saudi Arabia; the one that had the highest proteolytic activity and growth at high temperature (45 and 50°C respectively) was selected. The potent strain was identified and determined as Bacillus cereus according to morphological, biochemical tests and 16 S rRNA gene sequencing. The present study recorded that environmental conditions played a vital role in a protease production by bacterial isolate. B. cereus was able to produce of protease at 25, 35 and 45°C. Proteolytic activity was not recorded when the temperature was the highest at 50°C. The present study revealed that enzyme activity was enhanced in the presence of NaCl at different concentrations of 2.5 and 5 %. Also, the strain gave proteolytic activity at pH 7 and 9 more than at pH 3. Keywords: Bacillus cereus, proteolytic activity, evaluation, optimal conditions 1.INTRODUCTION Proteases are essential constituents of all forms of life on earth, including prokaryotes, fungi, plants and animals. Microbial proteases are among the most important hydrolytic enzymes and have been considered extensively since the advent of enzymology (Gupta et al., 2002). Variant of microorganisms were used to produce protease, but genera of Bacillus were so far the major important group of enzymes produced commercially (Ferrero et al., 1996). The genus Bacillus contains a number of industrially important species and an approximately half of the present commercial production of bulk enzymes derives from the strains of Bacillus spp. The Bacillus cereus group is the most source of commercial alkaline protease production worldwide (Joo et al., 2002 and Małgorzata et al., 2010). Its several important applications in routine life affairs like detergent industries, alcohol and beer production industries, wastewater treatment, leathering, food industries, biotransformation, debittering of hydrolyzed ISSN 1658-6050 proteins, oil manufacturing, medical and pharmaceutical industries and cosmetic/ sanitary industries (Aaslyng et al., 1990; Bierbaum et al., 1994; Emtiazi et al., 2005; Beheshti et al., 2009). Today, proteases account for approximately 40% of the total enzyme sales in various industrial market sectors (Leisola et al., 2001; Gupta et al., 2002). Accordingly to Chu (2007) proteases constitute a class of industrial enzymes, which alone form approximately 60% of the total world-wide enzyme production. The most important applications of protease are used in laundry detergents. However, proteases are also use in leather processing, brewing, food and pharmaceutical industries (Abdel-Naby et al., 1998). Proteases are also useful and important components in biopharmaceutical products such as contact-lens enzyme cleaners (Anwar and Saleemuddin, 1997). The proteolytic enzymes also offer a gentle and selective debridement, supporting the natural healing process in the successful local management of skin ulcerations E-mail: mohalabboud@hotmail.com Journal of Jazan University - Applied Sciences Branch Vol.3 No.1 Jan. 2014 (Safar 1435 H) 13 M. A. Al Abboud by the efficient removal of the necrotic material (Sjodahl et al., 2002). The production of protease depend on the type of substrate. Therefore the protease production mainly requires the appropriate substrates. There are many substrates used for protease production, which include skim milk, milk, peptone, casein etc. Some of the agricultural wastes, animal wastes, and plant wastes are also used as substrates for the production of protease, because they are readily available and economically very cheap and also they have high protein content. Yang et al. (1999) stated they one of the good substrates used for protease production due to its high protein content. Milk contains too little free amino acids and small peptides for sufficient growth of microorganisms. However, it contains 33.5% casein which can be degraded by proteinases and peptidases. Synthesis of proteolytic enzyme is therefore an essential requirement for good growth in milk (Fox, 1981). Recently, the physical factors affecting the production of protease from Bacillus cereus was investigated with Rathakrishnan and Nagarajan (2012 and 2013) where the physiological fermentation factors such as pH (8.0), temperature (43°C), fermentation time (26 hrs), inoculum level (3.2 ml) and substrate concentration (Agro industrial waste product groundnut shells 9.6g) were optimized by statistical analysis using response surface methodology. The aim of conducted research was to assess proteolytic activity of Bacillus cereus strains, depending on the source of proteins in a growth medium and temperature. The present study was aimed also to optimize pH, temperature, and salt concentration for maximum production of protease from Bacillus cereus. 2.MATERIAL AND METHODS 2.1.Source of samples Soil samples were collected from hot and salted soil of Jazan province, KSA. The collected samples were diluted in sterile saline solution (Hamidreza et al., 2007). The diluted samples were plated onto skim milk agar plates containing peptone (0.1% w/v), NaCl (0.5% w/v), agar (2.0% w/v), and skim milk (10% v/v). Plates were incubated at 37°C for 24 h. A clear zone of skim milk hydrolysis gave an indication of protease producing organisms (Poluri et al., 2003). All the bacterial colonies were isolated and purified in nutrient agar and screened in skim milk agar plates. 2.2.Screening for best strain produced protease Ten isolates were screening for best strain produced protease by plate assay using protease specific milk agar medium. The clear zone diameters were measured after incubated for 24 h at different temperature ranging from 20 to 60°C by flooded the plates with mercuric chloride solution, this method was referred as gelatin clear zone method (Abdel Galil,1992). Strains were assayed for proteolytic activity and a bacterium strain which had the most proteolytic activity was selected. 2.3.Identification of protease producing bacteria 2.3.1.Cultural characterization The isolates were observed under the microscope to obtain the colony morphology i.e. colour, shape, size, nature of colony and pigmentation. 2.3.2.Microscopic observation The bacterial isolates were gram stained and observed under a high power magnifying lens in light microscope. The standard microbiological methods as described in Bergy s Manual of Systematic Microbiology (Hensyl et al, 1994). Gram reaction, colony morpholo- 14 Journal of Jazan University - Applied Sciences Branch Vol.3 No.1 Jan. 2014 (Safar 1435 H) Isolation and Identification of Protease Producing ………. gy, vegetative cell and spore characteristics were observed from 12h old culture grown on a rotary shaker at 120 rpm, 30°C. 2.3.3.Physiological and Biochemical characterization The physiological and biochemical characters included: starch hydrolysis, gelatin liquefaction, indole production, nitrate reduction, urease activity, citrate utilization, production of oxidase, catalase, methyl red, voges proskauer, tryptophane deaminase, gelatinase, lysine decarboxylase, arginine dihydrolase, ßgalactosidase and fermentation oxidation of the following carbon sources (Dglucose, D-mannitol, inositol, D-sorbitol, rhamnose, D-sucrose, D-melibiose maltose, fructose, inulin and L- arabinose) were used for identification of bacterial isolate. 2.4.Identification of bacteria by sequencing of the16S rRNA gene 2.4.1.DNA extraction and PCR Amplification Genomic DNA was isolated according to the following procedure. 50 ml LB broth was inoculated with a single bacterial colony and grown to an absorbance 600 nm of 0.5–1.0 and cells were collected by centrifugation at 5000 rpm, at 4°C, for 10 min. The genomic DNA was isolated from the given organism. Amplification of the 16s rRNA gene was performed using the universal primers. F27 (5-AGAGTTTGATCMTGGCTCAG-3) and R1492 (5-TACGGYTACCTTGTTACGACTT-3)(which are targeted to universally conserved 16S rRNA regions). PCR was performed as follows in a total volume of 50 µ in a 0.2 ml thin walled PCR tube. 2.5.Bioinformatics analysis Sequences were compared to the nonredundant NCBI database by using BLASTn, with the default settings used to find the most similar sequence and were sorted by the E score. A representative sequence of 10 most similar neighbours was aligned using CLUSTAL W2 for multiple alignments with the default settings. The multiplealignment file was then used to create phylogram using MEGA5 software. 2.6.Qualitative test for protease: Proteolytic activity of Bacillus cereus was detected on the basis of appearance of clear zones around the bacterial colonies. Luria casein agar (1%) plates and Nutrient agar supplemented with 5%skim plates were used for this purpose. 2.7.Optimization of culture conditions for production of protease: Different culture conditions, like pH (3, 4, 5, 6, 7, 9 and 10), temperature (15, 25, 35, 45 and 50°C) and salt concentration (0.0, 2.5, 5.0, 7.5, 10%), were optimized for production of protease from Bacillus cereus. Samples were collected after 24 hrs and centrifuged at 1000 rpm for 30 minutes at 4°C. Supernatant was used as crude extract. Proteolytic activity was measured under standard assay conditions. 3.RESULTS AND DISCUSSION 3.1.Screening and isolation of proteolytic bacteria Bacillus strains are known to produce and secrete large quantities of extracellular enzymes as well as protease enzyme. Proteases, is one among the three largest groups of industrial enzymes. Proteases from microbial sources are preferred to the enzymes from plant and animal sources, since they possess almost all characteristics desired for their biotechnological applications (Gouda et al., 2006). In the current study, the proteolytic activities of all strains were assayed using skim milk agar, and exhibited as diameter of clear zone. Skim milk agar was the best for qualitative test of protease as showed Journal of Jazan University - Applied Sciences Branch Vol.3 No.1 Jan. 2014 (Safar 1435 H) 15 M. A. Al Abboud in Fig. (1A). The isolate (No. 1) was out of the ten isolates, it showed the most proteolytic activity, growing at high temperature 50 °C and therefore was selected for further study (Table 1). The isolate was short chains forming, gram-positive and rod shaped bacteria (Fig.1B). It was determined as Bacillus sp. According to the biochemical (Table 2) and phylogenic analysis (Fig. 2). 16S rDNA phylogenetic assay was performed to determine the species of the novel isolate and according to the assay result, it was determined as B.cereus. Folasade and Ajele (2005) indicated that the proteases secreted by nine Bacillus strains on medium containing 10% Skim milk agar. Bacillus species are considered to be the most important sources of protease (Prakasham et al., 2006; Rathakrishnan and Nagarajan, 2012). Many authors focused on B. cereus for protease production (Banik and Prakash, 2004; Mahmoud et al., 2007; Senthilraja and Saravanakumar, 2011; Rathakrishnan and Nagarajan, 2013). Phylogenetic analysis of 16 S rRNA sequence for the isolate revealed that, this strain has high sequences similarity with Bacillus cereus (Fig. 2). Fig. 1. Proteolytic activity of selected isolate (A), Gram positive and rod shape (B) Table 1. Proteolytic activity and growth of different isolates at different temperatures No. of isolate Proteolytic activity Growth at Different Temperature (°C) (Clear zone ) 30 40 50 1. +++++ + + + 2. + + 3. ++ + + + 4. ++ + + + 5. +++ + + 6. ++++ + + 7. ++ + + + 8. + + 9. ++ + + 10. + + + - D-Melibiose α-D-Lactose - D-Mannose - D-Mannitol Glycyl-LProline + D-Galacturonic Acid + D-Raffinose - α-D-Glucose + D-Sorbitol - Pectin + Gelatin + + + L-Galactonic Acid Lactone - L-Alanine ND D-Arabitol + D-Fructose - D-Maltose Dextrin 3 Negative Control - 2 + D-Gluconic Acid + L-Arginine + myo-Inositol - D-Galactose D-Fucose + N-Acetyl-DGlucosamine - Gentiobiose 6 - D-Turanose 8 L-Fucose ND L-Rhamnose - N-Acetyl-β-D- N-Acetyl-DMannosamine Galactosamine + Sucrose 7 Bromo-Succinic Acid + Formic Acid + + Acetic Acid + + D-Saccharic Acid - L-Serine + D-Serine + Inosine N-Acetyl Neuraminic Acid - Stachyose 9 L-Malic Acid ND D-Glucose- 6- D-Fructose- 6Glycerol D-Aspartic Acid PO4 PO4 + + + L-Glutamic L-Pyroglutamic L-Aspartic Acid L-Histidine Acid Acid + + + + D-Glucuronic Glucuronamide Mucic Acid Quinic Acid Acid + + ND ND + 3-Methyl Glucose - D-Salicin β-Methyl-DGlucoside + + D-Cellobiose 5 + D-Trehalose 4 + p-HydroxyD-Lactic Acid α-Keto-Glutaric Phenylacetic Methyl Pyruvate L-Lactic Acid Citric Acid D-Malic Acid Methyl Ester Acid G Acid + + + + + γ-Aminoα-Hydroxy- β-Hydroxy-D,L- α-Keto-Butyric Acetoacetic Tween 40 Propionic Acid Butryric Acid Butyric Acid Butyric Acid Acid Acid H + ND ND + + ND, not detected F E D C B A 1 Table 2. Biochemical analysis of proteolytic bacterial isolate (B. cereus) 16 Journal of Jazan University - Applied Sciences Branch Vol.3 No.1 Jan. 2014 (Safar 1435 H) Isolation and Identification of Protease Producing ………. Fig. 2. Rooted phylogenetic tree showing the relationship between isolate B. cereus to closely related Bacillus species Journal of Jazan University - Applied Sciences Branch Vol.3 No.1 Jan. 2014 (Safar 1435 H) 17 M. A. Al Abboud 18 Journal of Jazan University - Applied Sciences Branch Vol.3 No.1 Jan. 2014 (Safar 1435 H) Isolation and Identification of Protease Producing ………. Fig. 3. Electropherogram Data of B.cereus isolate Journal of Jazan University - Applied Sciences Branch Vol.3 No.1 Jan. 2014 (Safar 1435 H) 19 M. A. Al Abboud The environmental factors play an important role in the enzyme production as well as bacterial growth. In the present study, B. cereus was tested for their maximum ability to protease production in various level of temperature and pH. B. cereus was able to produce of protease at, 25, 35 and 45°C (Fig 4). On the other hand, B. cereus was failed to produce protease at 50 °C. Although their growth was clear compared to growth at low temperature 35 and 45°C (Fig.4). This result was confirmed that temperature is one of the most important factors affecting the enzyme production. The enzyme was produced at the pH between 3 and 9 (Fig. 5). The activity of protease increased at pH 7. Invariably, Chang et al. (2004) found that pH 10 was optimum for high alkaline protease production by Bacillus sp. On the other hand, Esakkiraj et al. (2007) was pointed out that at pH 7 and 60 °C temperature were optimum for maximum protease production by B. cereus. Other study was recorded that optimum pH for high protease production by haloalkalophilic Bacillus sp., when grown at gelatin broth medium at pH 8 and 9 (Patel et al., 2005). The current study may agreement with recent studies where, Ozgur and Nilufer (2011) stated that maximum growth of B.cereus was obtained at 30°C and at pH 7.0. The highest protease activity was determined at 30°C temperature and 6.4 pH conditions and after. The present study revealed that enzyme activity enhanced in the presence of NaCl at 2.5 and 5 % (Fig.6). Saxena and Singh (2011) stated that higher salinity may promote binding of a hydrophobic substrate to an enzyme to ensure optimal folding for enzymatic activity. Fig. 4. Proteolytic activity of B. cereus at different temperature °C 20 Journal of Jazan University - Applied Sciences Branch Vol.3 No.1 Jan. 2014 (Safar 1435 H) Isolation and Identification of Protease Producing ………. Fig. 5. Proteolytic activity of B. cereus at different pH Figure 5. Proteolytic activity of B. cereus at different concentrations of NaCl (%) Journal of Jazan University - Applied Sciences Branch Vol.3 No.1 Jan. 2014 (Safar 1435 H) 21 M. A. Al Abboud 4.CONCLUSION The identification of the bacteria was confirmed by 16S rRNA gene sequencing studies. The phylogenetic tree revealed that the cells fit in to an evolutionary cluster comprising members of Bacillus cereus. On the other hand, the present work shows that, this enzyme needs further work as extraction, characterization and purification. This enzyme can promote several industries with high efficiency such as meat tenderization, dairy industry, Pharmaceutical industry, Tanning of leather, Biodetergent, Bioremediation and amino acids industry. REFERENCES Aaslyng D., Cormsen E., Nordisk M.H.N. (1990). Mechanistic studies of proteases and lipases for the detergent industry. Theor. Tech. Appl., 5: 196-203. Abdel Galil O.A. (1992). Fermation of proteases by Aspergillus fumigates and Pencillium sp. J. king. Saud. University, 4(2): 127-136. Abdel-Naby M.A., Ismail A.M.S., Ahmed S.A., Abdel F.A.F. (1998). 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Enzyme Microbial Technology, 26: 406-413. 24 Journal of Jazan University - Applied Sciences Branch )Vol.3 No.1 Jan. 2014 (Safar 1435 H Isolation and Identification of Protease Producing ………. عزل وتعريف ساللة بكتيرية منتجة النزيم البروتياز من منطقة جازان بالمملكة العربية السعودية محمد عبد هللا العبود قسم االحياء -كلية العلوم -جامعة جازان -المملكة العربية السعودية Q تم عزل عشرة سالالت بكتيرية من التربة الساخنة والمملحة بمنطقة جازان بالمملكة العربية السعودية بهدف البحث عن ساللة بكتيرية ذات نشاط عالي من انتاجية انزيم البروتياز ،ووجد أن أحد العزالت البكتيرية لديها القدرة علي انتاج انزيم البروتياز عند درجة حرارة 45درجة مئوية ،وكان لديها القدرة علي النمو عند 50درجة مئوية ولكن فشلت في انتاج االنزيم عند تلك الدرجة ،وقد تم تعريف تلك الساللة علي اساس الصفات الظاهرية واالختبارات الكيموحيوية ووجد ان الساللة البكتيرية هي 16 S rRNAبناء علي التحليل التسلسلي ل باسيلس سيريس. وكشفت هذه الدراسة أن النشاط اإلنزيمي يتحسن في وجود كلوريد الصوديوم بتركيزات مختلفة بين ،٪10 ،2,5كما وجد ان النشاط االنزيمي عند درجة اس هيدروجيني 9 ،7أفضل من النشاط اإلنزيمي عند االس الهيدروجيني .3 كلمات مفتاحية ، Bacillus cereus :نشاط الروتييز ،تقييم ،الظروف المثلى. E-mail: mohalabboud@hotmail.com ISSN 1658-6050