*GENERAL NOTE THIS PROGRAM IS CURRENTLY SET UP FOR AUTOTETRAPLOIDS WITH 16
POTENTIAL FATHERS AND 19 SSR SCORED ON INDIVIDUALS;
*SSR NUMBER;
*CURRENTLY THE PROGRAM IS SET UP TO ACCOMIDATE UP TO 99 SSR PER INDIVIDUAL;
%MACRO SSR;
17
%MEND SSR;
*NUMBER OF FATHERS;
%MACRO FAT;
26
%MEND FAT;
*DATA SET A IS THE PROGENY DATA, MARKERS HAVE TO BE LABELED M + ALLELE + SSR
IN SEQUENTIAL ORDER FOR SAS MACROS TO PROCESS;
*FOR EACH PROGENY EACH SSR LOCUS CAN HAVE ONLY ONE ALLELE LISTED (I.E. EVEN
IF DOSAGE IS KNOWN IT SHOULD NOT BE LISTED FOR THE PROGRAM TO FUNCITON
CORRECTLY;
DATA A;
LENGTH ID $ 16;
INPUT ROW PLANT FEMALE ID $
M11 M21 M31 M41 M51 M61
M12 M22 M32 M42 M52 M62
M13 M23 M33 M43 M53 M63
M14 M24 M34 M44 M54 M64
M15 M25 M35 M45 M55 M65
M16 M26 M36 M46 M56 M66
M17 M27 M37 M47 M57 M67
M18 M28 M38 M48 M58 M68
M19 M29 M39 M49 M59 M69
M110 M210 M310 M410 M510 M610
M111 M211 M311 M411 M511 M611
M112 M212 M312 M412 M512 M612
M113 M213 M313 M413 M513 M613
M114 M214 M314 M414 M514 M614
M115 M215 M315 M415 M515 M615
M116 M216 M316 M416 M516 M616
M117 M217 M317 M417 M517 M617;
CARDS;
1
1
18
K003-A01
106
.
.
.
.
.
138
141
150
.
.
.
177
179
197
.
.
.
248
258
263
.
.
.
293
298
301
.
.
.
352
354
.
.
.
.
376
.
.
.
.
.
159
161
164
.
.
.
221
.
.
.
.
.
260
266
271
288
.
.
105
109
112
.
.
.
140
143
146
149
.
.
193
196
199
.
.
.
227
237
239
242
247
.
124
136
.
.
.
.
287
290
295
298
.
.
324
330
333
.
.
.
1
1
18
K004-A01
106
.
.
.
.
.
138
141
150
152
.
.
177
179
183
197
.
.
248
258
263
.
.
.
293
296
298
301
.
.
352
354
.
.
.
.
376
.
.
.
.
.
158
159
.
.
.
.
221
230
.
.
.
.
255
260
266
271
288
.
105
109
112
.
.
.
140
143
146
149
.
.
193
196
199
206
.
.
227
237
241
243
247
.
124
136
.
.
.
.
290
.
.
.
.
.
324
330
333
.
.
.
1
1
1
1
1
1
1
1
152
.
.
164
271
146
247
295
1
147
263
354
161
271
146
241
.
1
147
263
.
161
271
149
241
295
1
.
.
.
.
.
.
.
.
2
144
263
.
161
271
146
243
284
2
147
263
.
174
266
149
241
287
2
.
.
18
.
.
.
174
288
149
.
298
18
.
.
.
.
288
149
.
.
18
150
.
.
164
288
154
.
.
18
.
.
.
.
.
.
.
.
19
152
.
.
164
288
149
.
287
19
152
.
.
.
271
.
243
290
19
.
.
K005-C08
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
K008-E03
.
.
.
.
.
.
.
.
.
.
154
.
.
.
.
.
K010-E03
152
.
.
.
.
.
174
.
.
.
.
.
.
.
.
.
K012-H03
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
K003-B01
.
.
.
.
.
.
174
.
.
.
.
.
.
.
290
292
K004-B01
.
.
.
.
.
.
.
.
288
.
.
.
250
.
295
307
K005-D08
.
.
.
.
106
177
293
376
221
105
193
124
.
99
177
293
376
221
105
193
124
330
99
177
293
376
221
105
193
124
324
.
.
.
.
.
.
.
.
.
99
177
293
376
221
105
187
124
330
106
177
293
376
221
105
187
124
327
.
.
.
.
179
296
379
230
109
196
.
.
106
179
296
379
230
109
196
136
333
112
179
296
379
.
109
196
127
330
.
.
.
.
.
.
.
.
.
.
179
296
382
227
112
193
133
333
112
179
296
.
.
112
193
136
330
.
.
.
.
183
298
382
.
112
199
.
.
112
182
298
381
.
112
.
.
.
.
183
298
382
.
112
199
136
333
.
.
.
.
.
.
.
.
.
.
183
298
.
230
.
199
136
.
.
197
298
.
.
115
199
.
333
.
.
.
.
197
301
.
.
.
.
.
.
.
183
298
.
.
.
.
.
.
.
194
301
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
197
301
.
.
.
206
.
.
.
.
301
.
.
.
206
.
336
.
.
.
.
.
.
.
.
.
.
.
.
.
194
328
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
208
.
.
.
.
.
.
.
.
.
328
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
138
248
352
159
260
140
237
284
150
258
354
161
266
143
241
290
138
248
349
158
260
140
227
281
141
258
352
159
266
143
237
290
138
248
352
158
260
140
227
284
141
258
354
159
266
143
237
290
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
138
248
352
158
260
140
237
278
141
258
354
159
266
143
241
281
138
248
352
158
255
143
237
278
141
258
354
161
260
146
239
284
.
.
.
.
.
.
1
.
.
.
.
.
.
2
150
263
.
161
266
.
241
290
.
.
.
.
.
.
19
.
.
.
174
271
.
243
.
.
.
.
.
.
.
.
.
.
.
.
.
K008-F03
.
.
.
.
.
.
.
.
288
.
.
.
.
.
.
.
.
.
.
.
.
.
112
177
293
376
221
105
193
124
324
.
.
.
.
.
.
.
179
296
.
230
112
196
136
330
.
.
.
.
.
.
.
183
298
.
.
.
199
.
333
.
.
.
.
.
.
.
194
301
.
.
.
.
.
.
.
.
.
.
.
.
.
197
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
138
248
352
158
255
143
227
278
141
258
354
159
260
149
237
281
;
*ETC.;
*DATA SET B UPDATES PROGENY SET TO ADD F TO CREATE A SEQUENTIAL NUMBER
VARIABLE F FOR FEMALES FOR SAS MACRO PROCESSING;
DATA BX; SET A;
F = FEMALE;
RUN;
PROC PRINT;
RUN;
DATA B; SET BX;
RUN;
*DATA SET C CONTAINS PARENTAL GENOTYPES, MARKERS NEED
+ SSR IN SEQUENTIAL ORDER FOR SAS MACROS TO PROCESS;
DATA C1;
INPUT FEMALE
P11 P21 P31 P41 P51 P61
P12 P22 P32 P42 P52 P62
P13 P23 P33 P43 P53 P63
P14 P24 P34 P44 P54 P64
P15 P25 P35 P45 P55 P65
P16 P26 P36 P46 P56 P66
P17 P27 P37 P47 P57 P67
P18 P28 P38 P48 P58 P68
P19 P29 P39 P49 P59 P69
P110 P210 P310 P410 P510 P610
P111 P211 P311 P411 P511 P611
P112 P212 P312 P412 P512 P612
P113 P213 P313 P413 P513 P613
P114 P214 P314 P414 P514 P614
P115 P215 P315 P415 P515 P615
P116 P216 P316 P416 P516 P616
P117 P217 P317 P417 P517 P617;
CARDS;
1
99
106
112
.
.
.
138
141
177
179
181
183
.
.
248
255
298
301
328
.
.
.
352
354
376
379
382
.
.
.
156
161
TO BE LABLED P + ALLELE
152
258
.
164
.
.
.
175
.
.
.
.
.
.
.
.
2
3
4
5
6
7
221
105
193
124
324
90
177
298
376
221
105
193
124
327
90
177
293
376
221
105
193
127
327
90
177
293
376
221
105
187
124
327
99
177
301
376
221
105
193
124
330
112
169
293
376
221
105
193
124
330
112
179
301
376
221
105
193
230
112
196
130
327
99
179
301
379
224
112
.
133
330
99
179
298
379
224
112
.
130
333
99
179
298
381
230
112
193
130
330
112
179
328
379
230
112
206
127
333
.
177
298
.
224
112
199
127
333
.
182
307
379
230
112
199
.
.
199
.
330
112
182
328
386
230
.
.
136
333
112
.
301
382
227
.
.
133
.
106
182
301
386
.
.
199
133
333
.
183
.
381
.
.
.
.
.
.
179
301
.
230
.
.
130
.
.
194
.
382
.
.
.
.
.
.
.
333
.
183
.
.
.
.
.
.
336
.
.
328
.
230
.
.
136
.
112
194
328
.
.
.
.
.
.
.
.
.
386
.
.
.
.
.
.
183
328
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
194
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
197
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
197
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
197
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
260
140
237
278
266
143
243
287
271
146
.
290
277
149
.
.
.
.
.
.
.
.
.
.
138
248
352
156
260
143
237
284
141
258
354
159
266
146
241
290
147
263
.
161
271
149
247
295
150
.
.
175
277
151
.
298
.
.
.
.
288
154
.
.
.
.
.
.
.
.
.
.
138
248
352
153
260
140
227
278
141
258
354
156
266
143
241
284
.
.
.
159
271
146
243
290
.
.
.
161
277
149
.
295
.
.
.
174
.
151
.
.
.
.
.
.
.
.
.
.
138
248
349
156
255
140
239
278
147
258
352
159
266
143
241
284
150
.
354
161
271
146
242
287
.
.
.
.
288
.
243
295
.
.
.
.
.
.
247
298
.
.
.
.
.
.
.
.
138
248
349
156
260
143
227
278
141
258
354
161
266
146
237
290
147
263
.
175
277
149
243
292
152
.
.
.
.
154
.
295
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
138
248
349
156
260
143
227
284
152
258
352
159
266
146
237
290
.
263
354
161
271
149
241
304
.
.
.
175
.
154
252
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
138
248
352
156
260
143
227
141
258
354
159
266
149
237
150
263
.
161
271
151
243
152
.
.
175
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
8
10
11
12
13
14
124
327
99
177
298
376
221
105
193
124
327
99
177
296
376
221
105
187
124
330
112
177
296
376
221
105
187
124
327
99
177
298
376
221
105
187
124
327
99
177
293
376
221
105
187
124
325
99
177
293
376
221
105
187
124
330
136
330
112
179
301
382
224
112
.
130
333
112
179
301
.
227
109
193
127
333
.
179
298
379
.
112
193
127
330
106
182
301
.
224
109
193
130
333
112
179
298
382
224
109
193
130
327
112
179
301
386
230
112
193
127
333
.
333
.
181
307
.
.
115
.
.
.
.
181
.
.
.
112
199
130
.
.
.
301
381
.
.
196
.
.
112
194
307
.
.
115
.
136
336
.
.
301
.
.
112
.
133
330
.
183
304
.
.
.
196
130
336
.
.
.
197
.
.
.
.
.
.
.
.
197
.
.
.
.
.
.
.
.
.
304
386
.
.
199
.
.
.
.
328
.
.
.
.
.
.
.
.
304
.
.
115
.
136
333
.
.
307
.
.
.
199
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
307
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
328
.
.
.
.
.
.
.
.
328
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
278
290
295
307
.
.
138
248
352
159
260
143
237
284
144
258
354
161
266
146
241
287
147
263
.
175
271
.
242
290
.
.
.
.
288
.
.
295
.
.
.
.
.
.
.
307
.
.
.
.
.
.
.
.
138
248
352
158
255
143
237
278
141
258
354
161
260
146
239
284
144
263
.
.
266
149
241
287
147
.
.
.
271
.
243
290
.
.
.
.
288
.
.
.
.
.
.
.
.
.
.
.
138
248
349
156
260
143
227
278
141
258
352
158
266
146
237
284
147
263
354
159
.
149
243
287
152
.
.
161
.
.
.
290
.
.
.
.
.
.
.
307
.
.
.
.
.
.
.
.
138
248
354
158
255
143
227
281
147
258
.
159
260
146
237
284
150
263
.
161
266
149
241
290
157
.
.
.
271
.
250
295
.
.
.
.
.
.
.
298
.
.
.
.
.
.
.
307
138
248
349
159
260
143
237
284
141
258
354
161
266
146
241
290
147
263
.
174
271
149
.
295
150
.
.
.
.
.
.
307
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
138
248
349
153
255
143
227
284
141
258
352
156
260
146
237
290
147
263
354
161
271
149
241
292
152
.
.
174
277
154
252
295
.
.
.
175
.
.
.
.
.
.
.
.
.
.
.
.
15
16
17
18
19
20
21
99
177
293
376
221
105
193
124
330
99
177
296
376
221
105
187
124
333
99
169
293
376
221
105
193
124
327
106
179
293
376
221
105
193
124
324
99
177
293
376
221
105
187
124
330
90
177
296
376
221
105
187
124
327
106
177
296
106
179
296
381
230
109
196
127
333
106
179
298
382
227
.
193
133
.
112
177
301
386
224
112
.
127
333
.
182
296
379
230
109
196
136
330
112
179
296
.
230
112
193
136
333
112
179
298
.
230
112
193
127
330
.
179
301
112
197
298
382
.
112
199
136
.
119
182
301
.
.
.
196
.
.
.
179
304
.
230
.
.
130
.
.
183
298
.
.
112
199
.
333
.
183
298
.
.
.
199
.
.
.
.
301
.
.
.
206
130
333
.
.
307
.
.
301
.
.
.
.
.
.
.
194
328
.
.
.
.
.
.
.
182
316
.
.
.
.
.
.
.
194
301
.
.
.
.
.
.
.
197
301
.
.
.
206
.
.
.
.
304
.
.
.
.
.
336
.
.
.
.
.
328
.
.
.
.
.
.
.
197
.
.
.
.
.
.
.
.
194
328
.
.
.
.
.
.
.
197
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
307
.
.
.
.
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.
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.
.
.
.
.
.
.
.
.
208
.
.
.
.
.
.
.
.
197
.
.
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.
.
.
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.
.
.
.
.
.
138
248
349
158
260
143
227
281
144
258
352
159
266
146
237
284
147
263
354
161
288
149
241
290
150
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.
174
.
154
.
.
152
.
.
175
.
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.
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.
.
138
248
352
156
255
140
237
281
144
258
354
159
260
146
241
284
150
263
.
161
266
149
.
287
152
.
.
164
271
151
.
290
.
.
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.
.
295
.
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.
.
138
248
352
156
260
143
227
278
141
258
354
159
271
146
237
290
144
.
.
161
277
149
243
295
152
.
.
175
.
.
247
298
.
.
.
.
.
.
.
304
.
.
.
.
.
.
.
.
138
248
352
159
260
140
227
287
141
258
354
161
266
143
237
290
150
263
.
164
271
149
241
295
.
.
.
.
288
.
242
298
.
.
.
.
.
.
247
.
.
.
.
.
.
.
.
.
138
248
352
158
255
143
237
278
141
258
354
161
260
146
239
281
147
263
.
174
266
149
241
287
152
.
.
.
271
.
243
290
.
.
.
.
288
.
.
292
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.
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.
138
248
352
156
255
143
227
278
141
258
354
159
260
146
237
290
150
263
.
161
266
149
247
295
152
.
.
175
271
.
.
298
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.
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.
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307
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.
.
138
248
352
141
258
354
144
263
.
152
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.
.
.
.
.
.
.
22
23
24
25
9
26
376
221
105
187
124
327
99
177
298
376
221
105
187
124
324
99
177
296
376
221
105
187
124
333
106
179
298
376
221
105
193
124
327
106
179
301
376
221
105
193
124
327
106
177
298
376
221
105
193
124
327
90
177
293
376
221
105
379
.
109
193
127
330
.
179
301
382
230
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193
133
327
112
179
301
.
230
109
193
130
.
.
181
301
.
230
112
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330
112
182
304
.
224
112
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127
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112
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301
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224
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298
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382
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112
199
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.
183
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136
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333
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194
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227
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230
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194
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183
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197
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230
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197
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197
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194
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208
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197
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158
260
143
227
278
159
266
146
237
284
161
288
149
241
287
.
.
.
243
290
.
.
.
.
307
.
.
.
.
.
138
248
352
156
260
143
237
284
147
258
354
158
266
146
239
287
150
263
.
159
271
151
241
290
.
.
.
161
288
.
.
295
.
.
.
164
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307
.
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138
248
352
158
260
143
227
287
141
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354
159
266
146
237
290
147
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.
161
288
149
239
295
.
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175
.
151
248
307
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138
248
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159
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143
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141
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354
161
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146
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144
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.
174
271
151
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147
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175
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243
290
150
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250
295
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138
248
352
159
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143
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147
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354
161
260
146
237
287
150
263
.
174
266
149
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290
152
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271
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250
295
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307
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138
248
354
159
255
143
227
284
147
258
.
161
260
146
237
287
150
263
.
174
.
149
241
290
152
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175
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250
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138
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349
159
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143
141
255
354
161
266
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150
258
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164
277
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175
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187
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;
DATA C; SET C1;
F = FEMALE;
DROP FEMALE;
RUN;
PROC SORT DATA=C;
BY F;
RUN;
PROC SORT DATA=B;
BY F;
RUN;
%MACRO D;
*THIS FIRST LOOP/QUESTION DETERMINES PROGENY ALLELES THAT ARE NOT IN
THE MOTHER;
%DO A = 1 %TO %SSR %BY 1;
*LOOP VALUES 1 TO SSR #;
IF M1&A = . THEN DO;
H1&A = .;
H2&A = .;
H3&A = .;
H4&A = .;
H5&A = .;
H6&A = .;
END;
IF M1&A NE . THEN DO;
FLAG1&A = 0;
IF M1&A = P1&A THEN FLAG1&A = 1;
IF M1&A = P2&A THEN FLAG1&A = 1;
IF M1&A = P3&A THEN FLAG1&A = 1;
IF M1&A = P4&A THEN FLAG1&A = 1;
IF M1&A = P5&A THEN FLAG1&A = 1;
IF M1&A = P6&A THEN FLAG1&A = 1;
IF FLAG1&A = 0 THEN H1&A = M1&A;
IF FLAG1&A = 1 THEN H1&A = .;
FLAG2&A = 0;
IF M2&A = P1&A THEN FLAG2&A = 1;
IF M2&A = P2&A THEN FLAG2&A = 1;
IF M2&A = P3&A THEN FLAG2&A = 1;
IF M2&A = P4&A THEN FLAG2&A = 1;
IF M2&A = P5&A THEN FLAG2&A = 1;
IF M2&A = P6&A THEN FLAG2&A = 1;
IF FLAG2&A = 0 THEN H2&A = M2&A;
IF FLAG2&A = 1 THEN H2&A = .;
FLAG3&A = 0;
IF M3&A = P1&A THEN FLAG3&A = 1;
IF M3&A = P2&A THEN FLAG3&A = 1;
IF M3&A = P3&A THEN FLAG3&A = 1;
IF M3&A = P4&A THEN FLAG3&A = 1;
IF M3&A = P5&A THEN FLAG3&A = 1;
IF M3&A = P6&A THEN FLAG3&A = 1;
IF FLAG3&A = 0 THEN H3&A = M3&A;
IF FLAG3&A = 1 THEN H3&A = .;
FLAG4&A = 0;
IF M4&A = P1&A THEN FLAG4&A = 1;
IF M4&A = P2&A
IF M4&A = P3&A
IF M4&A = P4&A
IF M4&A = P5&A
IF M4&A = P6&A
IF FLAG4&A = 0
IF FLAG4&A = 1
FLAG5&A = 0;
IF M5&A = P1&A
IF M5&A = P2&A
IF M5&A = P3&A
IF M5&A = P4&A
IF M5&A = P5&A
IF M5&A = P6&A
IF FLAG5&A = 0
IF FLAG5&A = 1
FLAG6&A = 0;
IF M6&A = P1&A
IF M6&A = P2&A
IF M6&A = P3&A
IF M6&A = P4&A
IF M6&A = P5&A
IF M6&A = P6&A
IF FLAG6&A = 0
IF FLAG6&A = 1
THEN
THEN
THEN
THEN
THEN
THEN
THEN
FLAG4&A = 1;
FLAG4&A = 1;
FLAG4&A = 1;
FLAG4&A = 1;
FLAG4&A = 1;
H4&A = M4&A;
H4&A = .;
THEN
THEN
THEN
THEN
THEN
THEN
THEN
THEN
FLAG5&A = 1;
FLAG5&A = 1;
FLAG5&A = 1;
FLAG5&A = 1;
FLAG5&A = 1;
FLAG5&A = 1;
H5&A = M5&A;
H5&A = .;
THEN
THEN
THEN
THEN
THEN
THEN
THEN
THEN
FLAG6&A = 1;
FLAG6&A = 1;
FLAG6&A = 1;
FLAG6&A = 1;
FLAG6&A = 1;
FLAG6&A = 1;
H6&A = M6&A;
H6&A = .;
END;
* THIS SECTION CREATES/FORMATES THE PATERNAL HAPLOTYPE DATA
SETS OF ALLELES THAT CAN NOT BE FROM THE MOTHER;
IF H1&A = . THEN DO;
H1&A = H2&A;
H2&A = H3&A;
H3&A = H4&A;
H4&A = H5&A;
H5&A = H6&A;
H6&A = .;
END;
IF H1&A = . THEN DO;
H1&A = H2&A;
H2&A = H3&A;
H3&A = H4&A;
H4&A = H5&A;
H5&A = H6&A;
H6&A = .;
END;
IF H1&A = . THEN DO;
H1&A = H2&A;
H2&A = H3&A;
H3&A = H4&A;
H4&A = H5&A;
H5&A = H6&A;
H6&A = .;
END;
IF H1&A = . THEN DO;
H1&A = H2&A;
H2&A = H3&A;
H3&A = H4&A;
H4&A = H5&A;
H5&A = H6&A;
H6&A = .;
END;
IF H1&A = . THEN DO;
H1&A = H2&A;
H2&A = H3&A;
H3&A = H4&A;
H4&A = H5&A;
H5&A = H6&A;
H6&A = .;
END;
IF H1&A NE . THEN DO;
IF H2&A = . THEN DO;
H2&A = H3&A;
H3&A = H4&A;
H4&A = H5&A;
H5&A = H6&A;
H6&A = .;
END;
IF H2&A = . THEN DO;
H2&A = H3&A;
H3&A = H4&A;
H4&A = H5&A;
H5&A = H6&A;
H6&A = .;
END;
IF H2&A = . THEN DO;
H2&A = H3&A;
H3&A = H4&A;
H4&A = H5&A;
H5&A = H6&A;
H6&A = .;
END;
IF H2&A = . THEN DO;
H2&A = H3&A;
H3&A = H4&A;
H4&A = H5&A;
H5&A = H6&A;
H6&A = .;
END;
IF H2&A NE . THEN DO;
IF H3&A = . THEN DO;
H3&A = H4&A;
H4&A = H5&A;
H5&A = H6&A;
H6&A = .;
END;
IF H3&A = . THEN DO;
H3&A = H4&A;
H4&A = H5&A;
H5&A = H6&A;
H6&A = .;
END;
IF H3&A = . THEN DO;
H3&A = H4&A;
H4&A = H5&A;
H5&A = H6&A;
H6&A = .;
END;
IF H3&A NE . THEN DO;
IF H4&A = . THEN DO;
H4&A = H5&A;
H5&A = H6&A;
H6&A = .;
END;
IF H4&A = . THEN DO;
H4&A = H5&A;
H5&A = H6&A;
H6&A = .;
END;
IF H4&A NE . THEN DO;
IF H5&A = . THEN DO;
H5&A = H6&A;
H6&A = .;
END;
END;
END;
END;
END;
ERROR&A = 0;
* THIS QUETION DETERMINES IF THREE ALLELES OR MORE WERE
DERIVED FROM THE FATHER, THIS IS AN IMPOSSIBLE SITUATION, IN THIS CASE
THE MARKER IS SET AS UNINFORMATIVE AND A ERROR IS NOTED FOR
THE ERROR COUNT;
IF H4&A NE . THEN DO;
ERROR&A = 1;
H1&A = .;
H2&A = .;
H3&A = .;
END;
DROP FLAG1&A FLAG2&A FLAG3&A FLAG4&A H4&A H5&A H6&A;
%END;
%MEND D;
*DATA SET D MERGES PROGENY AND PARENTAL DATA SETS AND GENERATES HAPLOTYPIC
INFORMATION;
DATA D; MERGE B C;
BY F;
%D;
DUMB = 1;
IF ID = '' THEN DELETE; *DELETES PARENT LINES FOR FATHERS THAT DO NOT
SERVE AS MOTHERS;
RUN;
%MACRO A;
*THIS MACRO CREATES THE PARENTAL ALLELE VARIABLES FOR EVERY SSR TO
COMPARE TO PROGENY;
%DO A = 1 %TO %FAT %BY 1;
*LOOP VALUES 1 TO FATHERS #;
%DO B = 1 %TO %SSR %BY 1; *LOOP VALUES SSR 1 TO SSR #;
%IF &B < 10 %THEN %DO;
DATA E0&B&A; SET C;
IF F NE &A THEN DELETE;
A10&B&A = P1&B;
A20&B&A = P2&B;
A30&B&A = P3&B;
A40&B&A = P4&B;
A50&B&A = P5&B;
A60&B&A = P6&B;
DUMB = 1;
KEEP A10&B&A A20&B&A A30&B&A A40&B&A A50&B&A
A60&B&A DUMB;
RUN;
%END;
%ELSE %DO;
DATA E&B&A; SET C;
IF F NE &A THEN DELETE;
A1&B&A = P1&B;
A2&B&A = P2&B;
A3&B&A = P3&B;
A4&B&A = P4&B;
A5&B&A = P5&B;
A6&B&A = P6&B;
DUMB = 1;
KEEP A1&B&A A2&B&A A3&B&A A4&B&A A5&B&A A6&B&A
DUMB;
RUN;
%END;
%END;
%END;
%MEND A;
%A;
%MACRO B;
%DO A = 1 %TO %FAT %BY 1;
%DO B = 1 %TO %SSR %BY 1;
%IF &B < 10 %THEN %DO;
E0&B&A
%END;
%ELSE %DO;
E&B&A
%END;
%END;
%END;
%MEND B;
*DATA SET F MERGES MACRO READY PARENT INFORMATION WITH PROGENY/HAPLOTYPE
INFORMATION;
DATA F; MERGE %B;
BY DUMB;
DROP FEMALE;
RUN;
PROC PRINT;
RUN;
*THIS MACRO GENERATES CHECK VARIABLES AND VALUES;
%MACRO D;
%LET C = %FAT;
%DO A = 1 %TO %SSR %BY 1;
CHECK&A =
%IF &A < 10 %THEN %DO;
%DO B = 1 %TO %FAT-1 %BY 1;
C0&A&B +
%END;
C0&A&C;
%END;
%ELSE %DO;
%DO B = 1 %TO %FAT-1 %BY 1;
C&A&B +
%END;
C&A&C;
%END;
%END;
%MEND D;
%MACRO E;
%DO B = 1 %TO %SSR-1 %BY 1;
%IF &B < 10 %THEN %DO;
C0&B&A,
%END;
%ELSE %DO;
C&B&A,
%END;
%END;
%LET C = %EVAL(%SSR)&A;
%IF %SSR < 10 %THEN %DO;
C0&C
%END;
%ELSE %DO;
C&C
%END;
%MEND E;
%MACRO F;
%DO A = 1 %TO %SSR-1 %BY 1;
ERROR&A +
%END;
ERROR%SSR
%MEND F;
%MACRO G1;
%DO A = 1 %TO %SSR %BY 1;
GOOD&A = 0;
IF M1&A NE '.' THEN GOOD&A = 1;
%END;
%MEND G1;
%MACRO G2;
%DO A = 1 %TO %SSR %BY 1;
%IF &A NE %SSR %THEN %DO;
GOOD&A,
%END;
%ELSE %DO;
GOOD&A
%END;
%END;
%MEND G2;
%MACRO H;
%DO A = 1 %TO %SSR-1 %BY 1;
SAME&A,
%END;
%LET B = %SSR;
SAME&B
%MEND H;
*DATA SET G DOES THE PATERNITY TEST;
DATA G; MERGE D F;
BY DUMB;
%MACRO C;
%DO B = 1 %TO %SSR %BY 1; *LOOP 1 TO SSR #;
%IF &B < 10 %THEN %DO;
%DO A =
1 %TO %FAT %BY 1; *LOOP 1 TO FATHER #;
C0&B&A = 0; *INITIAL SET OF COUNTER TO ZERO,
I.E. ALL PARENTS ARE ASSUMED TO BE EXCLUDED UNTIL PROVEN OTHERWISE, IF C IS
SWITCHED TO 1 FOR A PRAENT/SSR THIS PARENT IS NOT EXCLUDED;
SAME&B = 0; *INITIAL SET OF SAME TO ZERO, THIS
IS FOR SELF POLLINATION ANALYSIS IGNORE;
%END;
*UNINFORMATIVE PATERNAL HAPLOTYPE;
IF H1&B = . THEN DO;
%DO A = 1 %TO %FAT %BY 1;
C0&B&A = 1;
SAME&B = 1;
%END;
END;
*INFORMATIVE HAPLOTYPE 1 UNIQUE PATERNAL ALLELE;
IF H1&B NE . THEN DO;
IF H2&B = . THEN DO;
%DO A = 1 %TO %FAT %BY 1;
IF H1&B = A10&B&A THEN C0&B&A = 1;
IF H1&B = A20&B&A THEN C0&B&A = 1;
IF H1&B = A30&B&A THEN C0&B&A = 1;
IF H1&B = A40&B&A THEN C0&B&A = 1;
IF H1&B = A50&B&A THEN C0&B&A = 1;
IF H1&B = A60&B&A THEN C0&B&A = 1;
%END;
END;
*INFORMATIVE HAPLOTYPE 2 UNIQUE PATERNAL
ALLELES;
IF H2&B NE . THEN DO;
IF H3&B = . THEN DO;
%DO A = 1 %TO %FAT %BY 1;
FLAG10&B&A = 0;
FLAG20&B&A = 0;
FLAG30&B&A = 0;
FLAG40&B&A = 0;
FLAG50&B&A = 0;
FLAG60&B&A = 0;
IF H1&B = A10&B&A THEN
FLAG10&B&A = 1;
IF H1&B = A20&B&A THEN
FLAG20&B&A = 1;
IF H1&B = A30&B&A THEN
FLAG30&B&A = 1;
IF H1&B = A40&B&A THEN
FLAG40&B&A = 1;
IF H1&B = A50&B&A THEN
FLAG50&B&A = 1;
IF H1&B = A60&B&A THEN
FLAG60&B&A = 1;
IF H2&B = A10&B&A THEN
FLAG10&B&A = 1;
IF H2&B = A20&B&A THEN
FLAG20&B&A = 1;
IF H2&B = A30&B&A THEN
FLAG30&B&A = 1;
IF H2&B = A40&B&A THEN
FLAG40&B&A = 1;
IF H2&B = A50&B&A THEN
FLAG50&B&A = 1;
IF H2&B = A60&B&A THEN
FLAG60&B&A = 1;
TEST0&B&A = FLAG10&B&A +
FLAG20&B&A + FLAG30&B&A + FLAG40&B&A + FLAG50&B&A + FLAG60&B&A;
IF TEST0&B&A = 2 THEN C0&B&A
= 1;
%END;
END;
*INFORMATIVE HAPLOYTPE 3 UNIQUE PATERNAL
ALLELES;
IF H3&B NE . THEN DO;
%DO A = 1 %TO %FAT %BY 1;
FLAG10&B&A = 0;
FLAG20&B&A = 0;
FLAG30&B&A = 0;
FLAG40&B&A = 0;
FLAG50&B&A = 0;
FLAG60&B&A = 0;
IF H1&B = A10&B&A THEN
FLAG10&B&A = 1;
IF H1&B = A20&B&A THEN
FLAG20&B&A = 1;
IF H1&B = A30&B&A THEN
FLAG30&B&A = 1;
IF H1&B = A40&B&A THEN
FLAG40&B&A = 1;
IF H1&B = A50&B&A THEN
FLAG50&B&A = 1;
IF H1&B = A60&B&A THEN
FLAG60&B&A = 1;
IF H2&B = A10&B&A THEN
FLAG10&B&A = 1;
IF H2&B = A20&B&A THEN
FLAG20&B&A = 1;
IF H2&B = A30&B&A THEN
FLAG30&B&A = 1;
IF H2&B = A40&B&A THEN
FLAG40&B&A = 1;
IF H2&B = A50&B&A THEN
FLAG50&B&A = 1;
IF H2&B = A60&B&A THEN
FLAG60&B&A = 1;
IF H3&B = A10&B&A THEN
FLAG10&B&A = 1;
IF H3&B = A20&B&A THEN
FLAG20&B&A = 1;
IF H3&B = A30&B&A THEN
FLAG30&B&A = 1;
IF H3&B = A40&B&A THEN
FLAG40&B&A = 1;
IF H3&B = A50&B&A THEN
FLAG50&B&A = 1;
IF H3&B = A60&B&A THEN
FLAG60&B&A = 1;
TEST0&B&A = FLAG10&B&A +
FLAG20&B&A + FLAG30&B&A + FLAG40&B&A + FLAG50&B&A + FLAG60&B&A;
IF TEST0&B&A = 3 THEN C0&B&A
= 1;
%END;
END;
END;
END;
%END;
%ELSE %DO;
%DO A =
1 %TO %FAT %BY 1;
C&B&A = 0;
SAME&B = 0;
%END;
*UNINFORMATIVE PATERNAL HAPLOTYPE;
IF H1&B = . THEN DO;
%DO A = 1 %TO %FAT %BY 1;
C&B&A = 1;
SAME&B = 1;
%END;
END;
*INFORMATIVE HAPLOTYPE 1 UNIQUE PATERNAL ALLELE;
IF H1&B NE . THEN DO;
IF H2&B = . THEN DO;
%DO A = 1 %TO %FAT %BY 1;
IF H1&B = A1&B&A THEN C&B&A = 1;
IF H1&B = A2&B&A THEN C&B&A = 1;
IF H1&B = A3&B&A THEN C&B&A = 1;
IF H1&B = A4&B&A THEN C&B&A = 1;
IF H1&B = A5&B&A THEN C&B&A = 1;
IF H1&B = A6&B&A THEN C&B&A = 1;
%END;
END;
*INFORMATIVE HAPLOTYPE 2 UNIQUE PATERNAL
ALLELE;
IF H2&B NE . THEN DO;
IF H3&B = . THEN DO;
%DO A = 1 %TO %FAT %BY 1;
FLAG1&B&A = 0;
FLAG2&B&A = 0;
FLAG3&B&A = 0;
FLAG4&B&A = 0;
FLAG5&B&A = 0;
FLAG6&B&A = 0;
IF H1&B = A1&B&A THEN
FLAG1&B&A = 1;
IF H1&B = A2&B&A THEN
FLAG2&B&A = 1;
IF H1&B = A3&B&A THEN
FLAG3&B&A = 1;
IF H1&B = A4&B&A THEN
FLAG4&B&A = 1;
IF H1&B = A5&B&A THEN
FLAG5&B&A = 1;
IF H1&B = A6&B&A THEN
FLAG6&B&A = 1;
IF H2&B = A1&B&A THEN
FLAG1&B&A = 1;
IF H2&B = A2&B&A THEN
FLAG2&B&A = 1;
IF H2&B = A3&B&A THEN
FLAG3&B&A = 1;
IF H2&B = A4&B&A THEN
FLAG4&B&A = 1;
IF H2&B = A5&B&A THEN
FLAG5&B&A = 1;
IF H2&B = A6&B&A THEN
FLAG6&B&A = 1;
TEST&B&A = FLAG1&B&A +
FLAG2&B&A + FLAG3&B&A + FLAG4&B&A + FLAG5&B&A + FLAG6&B&A;
IF TEST&B&A = 2 THEN C&B&A =
1;
%END;
END;
*INFORMATIVE HAPLOTYPE 3 UNIQUE PATERNAL
ALLELE;
IF H3&B NE . THEN DO;
%DO A = 1 %TO %FAT %BY 1;
FLAG1&B&A = 0;
FLAG2&B&A = 0;
FLAG3&B&A = 0;
FLAG4&B&A = 0;
FLAG5&B&A = 0;
FLAG6&B&A = 0;
IF H1&B = A1&B&A THEN
FLAG1&B&A = 1;
IF H1&B = A2&B&A THEN
FLAG2&B&A = 1;
IF H1&B = A3&B&A THEN
FLAG3&B&A = 1;
IF H1&B = A4&B&A THEN
FLAG4&B&A = 1;
IF H1&B = A5&B&A THEN
FLAG5&B&A = 1;
IF H1&B = A6&B&A THEN
FLAG6&B&A = 1;
IF H2&B = A1&B&A THEN
FLAG1&B&A = 1;
IF H2&B = A2&B&A THEN
FLAG2&B&A = 1;
IF H2&B = A3&B&A THEN
FLAG3&B&A = 1;
IF H2&B = A4&B&A THEN
FLAG4&B&A = 1;
IF H2&B = A5&B&A THEN
FLAG5&B&A = 1;
IF H2&B = A6&B&A THEN
FLAG6&B&A = 1;
IF H3&B = A1&B&A THEN
FLAG1&B&A = 1;
IF H3&B = A2&B&A THEN
FLAG2&B&A = 1;
IF H3&B = A3&B&A THEN
FLAG3&B&A = 1;
IF H3&B = A4&B&A THEN
FLAG4&B&A = 1;
IF H3&B = A5&B&A THEN
FLAG5&B&A = 1;
IF H3&B = A6&B&A THEN
FLAG6&B&A = 1;
TEST&B&A = FLAG1&B&A +
FLAG2&B&A + FLAG3&B&A + FLAG4&B&A + FLAG5&B&A + FLAG6&B&A;
IF TEST&B&A = 3 THEN C&B&A =
1;
%END;
END;
END;
END;
%END;
%END;
* THIS IS THE NUMBER OF SSR WHERE A PARTICULAR FATHER WAS NOT
EXCLUDED;
%DO A = 1 %TO %FAT %BY 1;
*LOOP 1 TO FATHER #;
CX&A = SUM(OF %E);
%END;
* THIS IS THE NUMBER OF NON-EXCLUDED FATHERS FOR EACH SSR;
%D;
%MEND C;
%C;
*THIS IS THE TOTAL ERROR COUNT ACROSS ALL SSR FOR EACH PROGENY;
ERROR = %F;
*THE SP VARIABLE IS THE COUNT OF A PROGENY’S SSR THAT HAVE AT LEAST ONE
VISIBLE ALLELE;
%G1;
SP = SUM(OF %G2);
IF SP < 5 THEN DELETE; *MINIMUM NUMBER OF SSR THAT HAVE TO BE VISIBLY
AMPLIFIED IN A PROGENY FOR ANALYSIS;
*THIS SECTION IS TO INDICATE POTENTIAL SELF-POLLINATIONS;
SP1 = SUM(OF %H);
SELF = 'NO ';
IF SP1 = %SSR THEN SELF = 'YES';
RUN;
*THIS SECTION CREATES THE "TYPE" AND "ALTERNATE" OUTPUT DISPLAYED TO THE
USER;
%MACRO I;
%DO A = 1 %TO %SSR %BY 1;
IF H1&A = . THEN INFSSR = INFSSR - 1;
%END;
%MEND I;
%MACRO J;
%DO A = 1 %TO %SSR %BY 1;
IF CHECK&A = 0 THEN ZEROSSR = ZEROSSR + 1;
%END;
%MEND J;
%MACRO K;
%DO A = %SSR %TO 1 %BY -1;
COUNT&A = 0;
%DO B = 1 %TO %FAT %BY 1;
IF CX&B = &A THEN COUNT&A = COUNT&A + 1;
%END;
%END;
%MEND K;
%MACRO L;
%DO B = 1 %TO 7 %BY 1;
%LET A&B = %EVAL(%SSR+1-&B);
%END;
IF SELF = 'YES' THEN DO;
TYPE = 'POSSIBLE SELF-FERTILIZATION
';
END;
ELSE DO;
IF COUNT&A1 > 1 THEN DO;
TYPE = 'MULTI-FATHERS';
IF INFSSR = 1 THEN ALTERNATE = 'SELF 1SSR ERR
';
END;
IF COUNT&A1 = 1 THEN DO;
TYPE = 'FATHER FOUND';
%DO D = 1 %TO %FAT %BY 1;
IF CX&D = &A1 THEN DO;
FATHER&A1 = &D;
END;
%END;
IF COUNT&A2 = 0 THEN DO;
TYPE = 'FATHER FOUND *';
IF COUNT&A3 = 0 THEN DO;
TYPE = 'FATHER FOUND **';
IF COUNT&A4 = 0 THEN DO;
TYPE = 'FATHER FOUND ***';
IF COUNT&A5 = 0 THEN DO;
TYPE = 'FATHER FOUND ****';
IF COUNT&A6 = 0 THEN DO;
TYPE = 'FATHER FOUND *****';
IF COUNT&A7 = 0 THEN TYPE =
'FATHER FOUND ******';
END;
END;
END;
END;
END;
IF INFSSR = 1 THEN ALTERNATE = 'SELF 1SSR ERR';
END;
IF COUNT&A1 = 0 THEN DO;
TYPE = 'ALL FATHERS EXCLUDED';
IF COUNT&A2 > 1 THEN ALTERNATE = 'MULTI-FATHERS 1SSR ERR';
IF COUNT&A2 = 1 THEN DO;
ALTERNATE = 'FATHER FOUND 1SSR ERR';
%DO D = 1 %TO %FAT %BY 1;
IF CX&D = &A2 THEN DO;
FATHER&A2 = &D;
END;
%END;
IF COUNT&A3 = 0 THEN DO;
ALTERNATE = 'FATHER FOUND 1SSR ERR *';
IF COUNT&A4 = 0 THEN DO;
ALTERNATE = 'FATHER FOUND 1SSR ERR **';
IF COUNT&A5 = 0 THEN DO;
ALTERNATE = 'FATHER FOUND 1SSR ERR
***';
IF COUNT&A6 = 0 THEN DO;
ALTERNATE = 'FATHER FOUND
1SSR ERR ****';
IF COUNT&A7 = 0 THEN
ALTERNATE = 'FATHER FOUND 1SSR ERR *****';
END;
END;
END;
END;
END;
IF COUNT&A2 = 0 THEN DO;
TYPE = 'ALL FATHERS EXCLUDED *';
IF COUNT&A3 > 1 THEN ALTERNATE = 'MULTI-FATHERS 2SSR
ERR';
IF COUNT&A3 = 1 THEN DO;
ALTERNATE = 'FATHER FOUND 2SSR ERR';
%DO D = 1 %TO %FAT %BY 1;
IF CX&D = &A3 THEN DO;
FATHER&A3 = &D;
END;
%END;
IF COUNT&A4 = 0 THEN DO;
ALTERNATE = 'FATHER FOUND 2SSR ERR *';
IF COUNT&A5 = 0 THEN DO;
ALTERNATE = 'FATHER FOUND 2SSR ERR
**';
IF COUNT&A6 = 0 THEN DO;
ALTERNATE = 'FATHER FOUND
2SSR ERR ***';
IF COUNT&A7 = 0 THEN
ALTERNATE = 'FATHER FOUND 2SSR ERR ****';
END;
END;
END;
END;
IF COUNT&A3 = 0 THEN DO;
TYPE = 'ALL FATHERS EXCLUDED **';
IF COUNT&A4 > 1 THEN ALTERNATE = 'MULTI-FATHERS
3SSR ERR';
IF COUNT&A4 = 1 THEN DO;
ALTERNATE = 'FATHER FOUND 3SSR ERR';
%DO D = 1 %TO %FAT %BY 1;
IF CX&D = &A4 THEN DO;
FATHER&A4 = &D;
END;
%END;
IF COUNT&A5 = 0 THEN DO;
ALTERNATE = 'FATHER FOUND 3SSR ERR
*';
IF COUNT&A6 = 0 THEN DO;
ALTERNATE = 'FATHER FOUND
3SSR ERR **';
IF COUNT&A7 = 0 THEN
ALTERNATE = 'FATHER FOUND 3SSR ERR ***';
END;
END;
END;
IF COUNT&A4 = 0 THEN DO;
TYPE = 'ALL FATHERS EXCLUDED ***';
IF COUNT&A5 = 0 THEN DO;
TYPE = 'ALL FATHERS EXCLUDED ****';
IF COUNT&A6 = 0 THEN DO;
TYPE = 'ALL FATHERS EXCLUDED
*****';
IF COUNT&A7 = 0 THEN TYPE =
'ALL FATHERS EXCLUDED ******';
END;
END;
END;
END;
END;
END;
END;
IF SELF = 'YES' THEN FATHER = FEMALE;
*IT IS CRITICAL THAT THIS IS ADJUSTED FOR UNQIUE DATA SETS, THIS SECTION
CONVERTS SEQUENTIAL FATHER NUMBER INTO FATHER NAME;
IF FATHER&A1 = 1 THEN FATHER = '1';
IF FATHER&A1 = 2 THEN FATHER = '2';
IF FATHER&A1 = 3 THEN FATHER = '3';
IF FATHER&A1 = 4 THEN FATHER = '4';
IF FATHER&A1 = 5 THEN FATHER = '5';
IF FATHER&A1 = 6 THEN FATHER = '6';
IF FATHER&A1 = 7 THEN FATHER = '7';
IF FATHER&A1 = 8 THEN FATHER = '8';
IF FATHER&A1 = 9 THEN FATHER = '9';
IF FATHER&A1 = 10 THEN FATHER = '10';
IF FATHER&A1 = 11 THEN FATHER = '11';
IF FATHER&A1 = 12 THEN FATHER = '12';
IF FATHER&A1 = 13 THEN FATHER = '13';
IF FATHER&A1 = 14 THEN FATHER = '14';
IF FATHER&A1 = 15 THEN FATHER = '15';
IF FATHER&A1 = 16 THEN FATHER = '16';
IF FATHER&A1 = 17 THEN FATHER = '17';
IF FATHER&A1 = 18 THEN FATHER = '18';
IF FATHER&A1 = 19 THEN FATHER = '19';
IF FATHER&A1 = 20 THEN FATHER = '20';
IF FATHER&A1 = 21 THEN FATHER = '21';
IF FATHER&A1 = 22 THEN FATHER = '22';
IF FATHER&A1 = 23 THEN FATHER = '23';
IF FATHER&A1 = 24 THEN FATHER = '24';
IF FATHER&A1 = 25 THEN FATHER = '25';
IF FATHER&A1 = 26 THEN FATHER = '26';
%MEND L;
DATA H; SET G;
INFSSR = %SSR;
%I;
ZEROSSR = 0;
%J;
%K;
%L;
RUN;
%MACRO M;
%DO A = %SSR %TO %SSR-3 %BY -1;
FATHER&A
%END;
%DO B = 1 %TO %FAT %BY 1;
CX&B
%END;
%DO C = 1 %TO %SSR %BY 1;
CHECK&C
%END;
%DO D = 1 %TO %SSR %BY 1;
COUNT&D
%END;
%DO E = 1 %TO %SSR %BY 1;
%DO F = 1 %TO 3 %BY 1;
H&F&E
%END;
%END;
%MEND M;
*THIS STEP RETAINS ALL OUTPUT VARIABLES THAT WILL BE EXPORTED TO EXCEL OUTPUT
FILE;
DATA I;
RETAIN ROW PLANT ID F FEMALE FATHER SELF SP ERROR ZEROSSR INFSSR TYPE
ALTERNATE %M;
SET H;
KEEP ROW PLANT ID F FEMALE FATHER SELF SP ERROR ZEROSSR INFSSR TYPE
ALTERNATE %M;
RUN;
*EXPORTS DATA TO EXCEL SPREADSHEET FILE, IF RESULTS.XLS FILE EXISTS THIS WILL
OVERWRITE EXISTING FILE WITHOUT PROMPTING;
*CHANGE EXPORT PATH AND FILE NAME AS DESIRED;
PROC EXPORT DATA= WORK.IX
OUTFILE= "RESULTS.xls"
DBMS=EXCEL5 REPLACE;
RUN;