Table S2. Table of hypotheses used to systematically explore implications of significant effects of coral category (A = Absent; C = Change; P = Present) on response variables (Acropora presence, recruitment, diversity, substratum depth, coral canopy depth, coral canopy height, and substratum suitability). Hypothesis Response variable Substratum depth Colonization in C facilitated by deeper water Hypothesis supported Coral canopy depth Not possible based on results for substratum depth Coral canopy height Coral growth in A not able to match canopy height in C Hypothesis supported Substratum suitability Coral not present in A due to lack of suitable substrate Change < Absent Water depth did not influence colonization in C Coral species in A have not grown vertically to the same extent as corals in C Hypothesis supported Coral growth in C less than in A Coral not present in A due to factors other than substrate suitability Change = Absent Water depth did not influence colonization of corals No difference in the vertical growth of corals in A and C Coral growth in A equal to that in C Change > Present Water depth did not influence coral distribution prior to subsidence Hypothesis supported Live coral surface in C has not yet caught up to depth in P Hypothesis supported Coral growth in C faster than in P Substratum suitability did not affect whether coral recruited and grew in C Hypothesis supported Low substrate suitability in P acceptable for coral colonization Change > Absent Recruitment Diversity Areas with higher recruitment were in locations where hard coral expanded and colonized Increase in coral cover due to higher diversity of corals; OR expansion of hard coral led to higher diversity coral High species diversity not a precursor to expansion of coral; OR coral expansion accomplished by few species Hypothesis supported Differences in species diversity not a causative factor of differences in coral abundance Acropora, expanded into newly available areas before other species Hypothesis supported Newly available space in C facilitated colonization by many species Acropora expanded into C. In P, Acropora has been replaced by other species Expansion of coral by vegetative growth, or, high recruitment led to expansion and has now lessened Hypothesis supported Differences in recruitment not a causative factor for differences in abundance of coral between groups Newly available space in C allowed higher recruitment to occur Acropora presence Expansion of hard coral occurred by species other than Acropora Acropora is equally likely to be present in C as in A Change < Present Shallower water in C prevented coral proliferation prior to subsidence; or subsidence facilitated coral expansion Water depth did not influence coral distribution prior to subsidence More likely to have historical factors influencing vertical growth of canopy in P Coral growth in C too slow to match canopy height in P, possibly due to time delays from recruitment in C Substrate in C less suitable than in P. Conditions in C improved by increase in water depth. Areas with longer established coral canopy facilitated coral recruitment Species diversity in C has not equalled that in P Weak support Acropora presence in C has not reached same level as in P Growth of coral in C has been sufficient to match the depth of the live coral canopy in P Coral growth in C fast enough to achieve same canopy height as in P Hypothesis supported Substrate was equally suitable in C and P Hypothesis supported Similar biological environmental features in the C and P result in similar rates of recruitment Hypothesis supported Similar biological or environmental features in C and P result in similar levels of diversity Hypothesis supported Acropora has colonized into C to the same extent as in P Hypothesis supported Absent > present Shallow water does not limit the distribution of hard coral in A Rapid coral growth in A and/or death in P Low substrate suitability in P acceptable for coral colonization. Not possible based on study design Shallow water in A limits the distribution of hard coral Coral growth in A not able to match canopy height in P Hypothesis supported Lack of coral in A due to low substrate suitability Higher availability of space in A allows higher recruitment to occur Hypothesis supported Increased habitat complexity in P allows increased recruitment; OR environmental factors in A preclude high recruitment Higher availability of space in A allows more species to occur than in P Absent < present Corals in A have not grown vertically to the same extent as in P Hypothesis supported Not possible based on study design Increased habitat complexity in P allows increased species diversity OR environmental factors in A preclude high diversity Ecological factors prevented Acropora from becoming established in A; OR there had been insufficient time since subsidence for Acropora to establish in A Hypothesis supported Change = Present 2 Absent = Present Shallow water does not limit the distribution of hard coral in A Hypothesis supported Not possible based on study design Coral growth in A and/or death in P Substratum suitability did not affect whether coral could survive in A Hypothesis supported Different habitat features do not influence recruitment; OR recruitment does not influence abundance of hard corals Hypothesis supported Diversity similar between communities which have not changed identity; or, diversity did not influence coral presence for sites established for similar durations Hypothesis supported Greater occurrence of hard coral in P due to genera other than Acropora 3