You Are What You Eat: An Investigation of Macromolecules Student Materials Introduction........................................................................................................... 2 Lab Protocol.......................................................................................................... 5 Pre-Lab Questions ................................................................................................ 10 Post-Lab Questions and Analysis ....................................................................... 11 Students You should read the Introduction and Lab Protocol and then answer the Pre-Lab Questions. Also be sure to answer the questions that are embedded in the Introduction. Completion of the questions will help you understand the concepts and procedures of the lab. Once you have completed the lab, answer the Post-Lab Questions and Analysis. 1 Introduction When choosing food for lunch, do you ever consider the amount of protein, carbohydrates, and lipids (fats) in your choices? Or maybe you think back to a version of the classic food pyramid: grains on the bottom, fats and sweets at the top, meat, dairy, fruits, and vegetables in between. You probably know that grains like bread contain carbohydrates, but did you know that is also is a source of protein? And did you ever think about the difference between whole wheat bread and white bread? It’s fiber—a special kind of carbohydrate that helps with digestion. Working up the pyramid, tuna fish, hamburger, and turkey slices contain protein, but did you know that they also contain some fat? Dairy products contain protein, too, but they also contain carbohydrates in the form of milk sugars. There is fat in dairy, too, unless you opt for nonfat yogurt of skim milk. You know what else contains fat and protein? A plum! Surprised? You shouldn’t be! Vegans don’t eat animal products, not even dairy and eggs, but they still manage to get protein—it’s just protein that comes from plants instead of animals. Tofu, which is made from soybeans is full of protein, as are legumes, such as beans and lentils. Legumes have a lot of fiber, too, as do fruits and vegetables. Chocolate is a sweet and has fat, but it also has carbohydrates, fiber, and protein! On top of all of this, guess what else you’re eating every time you eat a product that comes from plants or animals? DNA and RNA! That old food pyramid is looking a bit more complicated now, isn’t it? Biochemistry of macromolecules You may not have realized it, but how much protein, carbohydrate, fat, and fiber a food contains all comes down to biochemistry. So as we explore macromolecules in this lab, remember: you already know a lot. Much of our food comes directly from plants and animals. Plants and animals are composed of cells, and all cells have four major types of large, complex molecules called macromolecules: carbohydrates, proteins, lipids, and nucleic acids. Say you have 1 cup of tuna fish and 1 cup of strawberries for lunch. Both foods are composed of cells and all cells have protein, carbohydrates, lipids, and nucleic acids. Which of these macromolecules contain carbon? ___________________________________ Which of these macromolecules contain nitrogen? __________________________________ Which of these macromolecules contain phosphorus? _______________________________ If the tuna fish and the strawberries are both composed of cells, why do the protein and carbohydrate amounts differ between the two snacks? __________________________________________ __________________________________________________________________________ If you have taken ecology, you learned that nutrients cycle through the environment, but did you also know they cycled within organisms? Plants are called primary producers (or autotrophs) because they produce their own carbohydrates through photosynthesis using water, carbon dioxide, and energy from the sun. Plants also metabolize some of these carbohydrates to supply energy and raw materials to synthesize complex carbohydrates, proteins, lipids, and nucleic acids using nitrogen, phosphate, and trace elements acquired from the environment. Consumers (heterotrophs), which include all organisms that aren’t capable of photosynthesis (including humans), have to rely on the environment for all of the raw materials they need to build new cells. Most of these raw materials come from the macromolecules consumed in food. These macromolecules get broken down through the processes of digestion and the resulting building blocks are used directly or indirectly to form new materials needed for growth and development. What is the name and chemical formula for the monosaccharide produced by photosynthesis? __________________________________________________________________________ 2 What is the name of the process that plants use to metabolize carbohydrates to produce the energy they need to synthesize other types of macromolecules? _________________________________ What is the name of the process that humans use to metabolize carbohydrates to produce the energy they need to synthesize other types of macromolecules? _________________________________ Most macromolecules are made of repeating subunits called monomers. Since macromolecules are made of several monomers they can be called polymers. When two monomers are joined together the chemical reaction is called dehydration synthesis. The reaction involves the release of an OH– from one monomer and the release of an H+ from the other. These ions join to form a water molecule. In addition to forming new polymers, cells also need to break down polymers. This reaction is called hydrolysis. The hydrolytic reaction requires the addition of a water molecule and breaks the bond between two monomers. Dairy products contain the disaccharide lactose, which is made up of the monosaccharides galactose and glucose. The overall formula for lactose is C12H22O11. When lactose forms, a molecule of water (H2O) is released. What is the chemical formula for galactose? Hint! Think of the overall reaction: glucose + galactose lactose + water. Fill in the formulas you know and balance the equation. _____ What do you notice about the chemical formulas for glucose and galactose? ____________ Testing for macromolecules In this lab, you will use simple methods to test for the presence of carbohydrates, protein, lipids, and nucleic acid in lima beans and corn. Carbohydrates are primarily used as a source of energy. Plants and some types of animals also use carbohydrates for structure. Although all carbohydrates contain carbon, oxygen, and hydrogen, the chemical nature of monosaccharides (simple sugars, monomers) and polysaccharides (complex sugars, polymers) differ, which makes it possible for us to identify them with chemical tests. In this lab, you will use Benedict’s solution and iodine to test foods for different carbohydrates. Monosaccharides will turn Benedict’s solution from blue to a red or rusty orange. Lugol’s solution’s (iodine) changes from dark red to blue-black when it is mixed with the polysaccharide, starch. Proteins are used in cells in a variety of ways, including as enzymes, structural components, and signaling. Some proteins are composed of a single long polymer of amino acids called a polypeptide. Other proteins are composed of two or more polypeptides. There are 20 different amino acids that can be joined together in any order and since amino acid chains can vary greatly in length, polypeptides (and therefore proteins) are highly diverse. The order of amino acids in a polypeptide dictates the structure and function of a protein. Proteins can be distinguished from other macromolecules using a chemical called Biuret. This blue liquid will turn purple when mixed with proteins. What do enzymes do? ________________________________________________________ Nucleic acids are polymers of nucleotides. Each nucleotide is made up of a five-carbon sugar, a phosphate group, and a base. DNA nucleotides contain the sugar deoxyribose while RNA nucleotides contain the sugar ribose. The bases adenine, cytosine, guanine, and thymine (A, C, G, T) are found in DNA, while RNA contains adenine, cytosine, guanine, and uracil (A, C, G, U). The primary function of nucleic acids is information storage and transmission. DNA provides the information needed for the cell to make proteins. A gene is a small segment of a chromosome that contains the information to make one polypeptide. So when you hear the words chromosome or gene, you should be thinking about DNA! Together, DNA and RNA contain all of the blueprints and instructions for all of life’s processes. SYBR Safe solution contains a molecule that binds to DNA and causes it to glow green when viewed under a UV light. Lipids are used for energy storage and structural components of the cell. Lipids are a large and diverse group of molecules that are primarily composed of long chains of hydrogen and carbon. They are non-polar (hydrophobic) 3 molecules so they do not mix with water Lipids are a not composed of repeating subunits, so they are not really polymers. Modified lipids called phospholipids are the major component of the plasma membrane and are critical to cells. Lipids can be tested with Sudan IV. Like lipids, Sudan IV is hydrophobic. When mixed with a watery solution, Sudan IV and lipids will form a separate bright-red layer. Given what you know about lipids, explain why your salad dressing separates? ___________ 4 You Are What You Eat: An Investigation of Macromolecules Lab Protocol Materials: 1 p200 micropipettor and pipette tips 2 microcentrifuge tubes 8 test tubes 1 test tube rack 4–10 transfer pipettes permanent marker (such as Sharpie) distilled water BSA (protein) solution Biuret solution glucose solution Benedict’s solution boiling hot water bath starch solution Lugol’s solution vegetable oil ethanol Sudan IV lambda DNA SYBR Safe solution UV light source lima bean solution corn solution Procedure: Make the control solutions Important! Safety goggles should be worn throughout this lab. 1. Use a permanent marker to label the 8 test tubes and 2 microcentrifuge tubes according to Table 1. 2. Using a clean transfer pipette, put approximately 2 mL of distilled water into each of the negative control test tubes (P–, G–, S–, L–) 3. Using a 200-μL micropipette, put approximately 25 μL of distilled water into the negative control microcentrifuge tube (NA–). Protein positive (P+) and negative (P–) controls 4. Using a clean transfer pipette, put approximately 2 mL of BSA solution into the P+ test tube. 5. Add 5 drops of Biuret reagent to the P+ and P– tubes. Hold the tubes over white paper and examine. Record the color in Table 1. Glucose positive (G+) and negative (G–) controls 6. Using a clean transfer pipette, put approximately 2 mL of glucose solution into the C/G+ test tube. 7. Add 1 mL of Benedict’s solution to the G+ and G– tubes. Carefully place the test tubes in a boiling hot water bath. Wait 3-4 minutes. Using tongs or a test tube holder to protect your hand, remove the test tubes from the water bath and place them in a test tube rack. Caution! Be very careful when handling the test tubes, they will be hot. Record the color in Table 1. 5 Starch positive (S+) and negative (S–) controls 8. Using a clean transfer pipette, put approximately 2 mL of starch solution into the S+ test tube. 9. Add 3 drops of Lugol’s solution to the S+ and S– tubes. Record the color in Table 1. Lipid positive (L+) and negative (L–) controls 10. Using a clean transfer pipette, put approximately 1 mL of distilled water into the L+ test tube. 11. Using a clean transfer pipette, put approximately 0.5 mL of vegetable oil into the L+ test tube. 11. Slowly add 1 mL of ethanol to the L+ and L– test tubes by letting the ethanol run down the side of the test tube. Add 3 drops of Sudan IV to both test tubes. Wait 4–5 minutes. Record the color in Table 1. Nucleic acid positive (NA+) and negative (NA–) controls 12. Using a p200 micropipette and clean pipette tip, place approximately 25 μL of Lambda DNA to the NA+ tube. 13. Using a clean pipette tip, add 25 μL of SYBR Safe solution to NA+ and NA– tubes. Important! Be sure to use a new tip for each test solution. Gently mix the solutions and observe them under a UV light. Caution! Use the appropriate protective gear when using a UV light. Record the color in Table 1. 14. Put all 10 of these controls aside in a safe location. You will use these tubes for your standard tests and should keep them for comparison throughout the lab. 6 Table 1. Control Solutions Label Contents Test Reagent Positive control, protein P+ BSA solution (protein) Biuret solution Negative control, protein P– distilled water Biuret solution Positive control, glucose and other monosaccharides G+ glucose solution Benedict’s solution Negative control, glucose and other monosaccharides G– distilled water Benedict’s solution Positive control, starch and other polysaccharides S+ starch solution Lugol’s solution Negative control, starch and other polysaccharides S– distilled water Lugol’s solution Positive control, lipids L+ vegetable oil Sudan IV solution Negative control, lipids L– distilled water Sudan IV solution Positive control, nucleic acids NA+ Lambda DNA SYBR Safe solution NA– distilled water SYBR Safe solution Color Observed *(microcentrifuge tube) Negative control, nucleic acids *(microcentrifuge tube) 7 Testing the seed samples 1. Before testing, predict which compounds will be found in each food. Indicate your predictions in Table 2. Use (+) to indicate predicted presence and (–) to indicate predicted absence. 2. Use a permanent marker to label the 8 test tubes and 2 microcentrifuge tubes according to Table 2. 3. Using a clean transfer pipette, put approximately 2 mL of lima bean solution into each of the lima bean (LB) test tubes. 4. Using a p200 micropipette, put approximately 25 μL of lima bean solution into the NA/LB tube and the NA/C tube. 5. Using a clean transfer pipette, put approximately 2 mL of corn solution into each of the corn (C) test tubes. 5. Using a p200 micropipette, put approximately 25 μL of corn solution into the NA/C tube. 6. Add 5 drops of Biuret reagent to the P/LB and P/C tubes. Hold the tubes over white paper and examine. Record the color in Table 2. 7. Add 1 mL of Benedict’s solution to the G/LB and G/C tubes. Carefully place the test tubes in a boiling hot water bath. Wait 3-4minutes. Using tongs or a test tube holder to protect your hand, remove the test tubes from the water bath and place them in a test tube rack. Caution! Be very careful when handling the test tubes, they will be hot. Record the color in Table 2. 8. Add 3 drops of Lugol’s solution to the S/LB and S/C tubes. Record the color on the Table 2. 9. Slowly add 1 mL of ethanol to the Lipid LB and Lipid C test tubes by letting the ethanol run down the side of the tube. Add 3 drops of Sudan IV to both test tubes. Wait 4–5 minutes. Record the color and the location of the color in Table 2. 10. Add 25 μL of SYBR Safe solution to NA/LB and NA/C tubes. Important! Be sure to use a new tip for each test solution. Gently mix the solutions and observe them under a UV light. Caution! Use the appropriate protective gear when using a UV light. Record the color in Table 2. 11. Clean and dispose of materials as directed by your instructor. 8 Table 2: Seed Tests Label Test Solution Test Reagent Protein, lima bean P/LB lima bean Biuret solution Protein, corn P/C corn Biuret solution Glucose, lima bean G/LB lima bean Benedict’s solution Glucose, corn G/C corn Benedict’s solution Starch, lima bean S/LB lima bean Lugol’s solution Starch, corn S/C corn Lugol’s solution Lipid, lima bean L/LB lima bean Sudan IV solution Lipid, corn L /C corn Sudan IV solution Nucleic acid, lima bean NA/LB lima bean SYBR Safe solution NA/C corn SYBR Safe solution Prediction (+/–) Results *(microcentrifuge tube) Nucleic acid, corn *(microcentrifuge tube) 9 You Are What You Eat: An Investigation of Macromolecules Pre-Lab Questions Directions: After reading through the introduction and protocol for the macromolecule lab, answer the questions below. 1. Remembering What are the four primary types of macromolecules? 2. Understanding You read somewhere that having a protein-rich breakfast can help combat fatigue and improve test performance. Which of the following would make the best breakfast option the morning of a big exam: toast with butter and jam OR an omelet with black beans and cheese? Justify your answer. 3. Understanding Why are plants called “producers” and other organisms called “consumers”? 4. Applying Look at the diagram below. Identify: the type of macromolecule, monomer, and polymer involved; and whether the reaction is a dehydration reaction or a hydrolysis reaction. Wikicommons 5. Remembering Match the following indicators with the type of macromolecule they will be used to test: 1. Benedict’s solution a. Carbohydrates—monosaccaharides 2. Biuret solution b. Carbohydrate—polysaccharides 3. Lugol’s solution c. Lipids 4. Sudan IV solution d. Nucleic acids 5. SYBR Safe solution e. Proteins 10 You Are What You Eat: An Investigation of Macromolecules Post-Lab Questions and Analysis Directions: After completing the macromolecules lab, answer the questions below. 1. Analyzing How did your predictions match up against your results? Did you get any unexpected results? 2. Applying The nutrition label below came from either a can of corn or a can of lima beans. Which is it? Can you tell? Explain your answer. 3. Applying The nutritional information for fresh strawberries is below. Notice that there is no fat (Total Fat = 0g) in a serving of 8 medium berries. Your friend concludes that strawberries are “fat free.” Explain why that isn’t true. 11