FOR ONLINE PUBLICATION ONLY Appendix A. Declining high-TL biomass: The Sequester Option In the main article, we model species (or taxa specific) changes in biomass for the high-TL species/taxa. Overall there was a decrease of approximately 40% in the biomass of high-TL groundfishes, but this decline in abundance was not distributed evenly across groups. Some species like Pacific hake showing almost 90% drops in biomass whereas other species had smaller changes. Here we run a separate simulation to determine whether modelling species specific changes was important to evaluating the impacts of MTL and a change in the abundance of high-TL groundfishes for the structure and function of the California Current. We perturbed the Ecopath and Ecosim (EwE) models by reducing the biomass of all high-TL groundfish functional groups by 40%, approximately the same decline in biomass of high-TL groundfishes seen in the trawl survey. We applied this decrease in biomass broadly across the groundfishes and did not match species-specific declines. The 40% decrease in biomass was applied to the same groups as in the primary analysis. In all other aspects, the two EwE analyses were the same. Results of the two models were largely similar although there were some minor differences (Table S1, Figure S1). For biomass, the same groups showed instantaneous responses, but there were some minor differences in the dynamic response. TL groundfishes showed a stronger instantaneous response under the species-specific biomass modifications but no dynamic response (Table 3). Under the across the board reduction model, this group had a weaker instantaneous response and also a weak dynamic response. In terms of ecosystem function, there were instantaneous increases in zooplanktivory and macroinvertory under the general 40% reductions that were not apparent in the species-specific model. The instantaneous decreases in consumption and respiration seen in the species –specific model were not evident in the 40% reductions. Both models showed similar trends in terms of dynamic responses of higher functional groups. In both cases, competitors increased, and initial increases in intermediate TL prey were dampened. Lower-TL prey initially decreased but then began to recover. The ‘other’ group showed less of a response than in the main simulation. Table S1. Change in Biomass Accumulation Rates (Instantaneous) and Mean Annual Percentage Difference (Dynamic) Projected over 10 Years for a Subset of Non-groundfish Species, Trophic Groups, and Ecosystem Functions Under a 40% Decline in High-TL (≥3.5) Groundfish Biomass Relative to No Decline in Predatory Groundfishes Standardized response Instantaneous Dynamic Species group phytoplankton small zooplankton carnivorous zooplankton amphipods krill jellies pandalid shrimp crabs squid forage fish salmon low-TL groundfish albacore seabirds harbour seals whales Na na ++++ ++++ ++++ ++++ ++++ +++ ++++ ++++ +++ ++ na na na na Ecosystem function herbivory zooplanktivory* macroinvertivory* piscivory* scavenging ++++ ++++ ++++ na ++++ consumption respiration throughput production net primary production + + + ++ + + + + + = no response, <10% change + = 10-20% increase ++ = 20-50% increase +++ = 50-100% increase ++++ = > 100% increase Blank cells = no response was possible with the analytical approach *excluding high-TL groundfish †Trophic groupings based on prey items that make up the greatest proportion of each consumer’s diet in the Ecopath model Figure S1. Dynamic responses of the California Current food web to a 40%, across the board reduction in higher trophic level groundfishes (TL ≥3.5). Predicted differences between ten-year model simulations of a 40% reduction in higher trophic level groundfishes and baseline trajectories for intermediate and lower trophic level prey,