Additional supporting information may be found in the online version of this article:
Genome-wide fractionation and identification of WRKY transcription factors in Chinese Cabbage (Brassica rapa ssp.
pekinensis) reveal colinearity and their expression patterns under abiotic and biotic stresses
Jun Tang1, XI-Lin Hou1*, Feng Wang1, Zhen Wang1 and Zhi-Nan Huang1
State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural
University, Nanjing 210095, China 1
*To whom correspondence should be addressed.
College of Horticulture, Nanjing Agricultural University
1 Weigang, Nanjing 210095, China
Tel: +86-025-84395917
Fax: +86-025-84395266
E-mail: hxl@njau.edu.cn
Supplementary data legends
Supplementary Table 1 Identification of WRKY TF genes in Chinese cabbage.
Supplementary Table 2 RNA-seq data of BrWRKYs in roots, stems and leaves.
Supplementary Table 3 Primers for quantitative PCR of BrWRKYs.
Supplementary Table 4 List of collinear genes in Chinese cabbage.
Supplementary Table 5 List of tandem duplicated gene pairs in Chinese cabbage.
Supplementary Fig. 1 Alignment of WRKY domains of the WRKY superfamily in Chinese cabbage. Conserved amino
acid residues of WRKY domains are shown in gray.
Supplementary Fig. 2 Phylogenetic relationship of WRKY gene family in Chinese cabbage and Arabidopsis. (a)
Phylogenetic relationship of WRKY domains across Chinese cabbage based on multiple sequence alignment of 145
full-length BrWRKY domains. (b) Phylogenetic relationship of WRKY domains across Arabidopsis and Chinese cabbage
based on multiple sequence alignment of all of WRKY domains among Arabidopsis and Chinese cabbage.