ESM Table S1 Allele calls at 10 loci for the strain of Symbiodinium

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ESM Table S1 Allele calls at 10 loci for the strain of Symbiodinium trenchii found associated with Siderastrea glynni . The frequencies of these alleles, based on analyses from three separate populations, are listed. The likelihood of origin for this genotype was calculated by dividing the relative probability for this complete multi-locus genotype occurring in the Caribbean divided by the relative probability for it occurring in the

Indian Ocean (giving a likelihood ratio of 1:124,266). The allele for sym 93 has yet to be found in the western Pacific (grey shading)

Locus sym 9 sym 11 sym 14 sym 17 sym 34 sym 66 sym 93 sym 92 sym 82 sym 87

Allele

106

109

151

153

177

179

141

143

385

389

294

151

128

234

243

240

244

Caribbean

0.513

0.488

0.5

0.456

0.527

0.473

0.486

0.486

0.388

0.025

1

0.2

0.988

0.447

0.316

0.5

0.487

Pacific

Location

Indian

0.473

0.5

0.423

0.324

0.491

0.426

0.5

0.375

0.214

0.036

0.58

0

0.868

0.187

0.06

0.449

0.312

0.574

0.333

0.337

0.212

0.434

0.481

0.46

0.19

0.047

0.057

0.64

0.01

0.713

0.073

0.042

0.462

0.434

Tropical

Eastern Pacific

0.5

0.5

0.5

0.5

0.5

0.5

1

0.5

0.5

0.5

0.5

0.5

0.5

1

1

0.5

0.5 probability relative probability

2.21E-07

0.003616157

0

0

1.78E-12

2.91E-08

6.10E-05

1

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