S1. Updates to the GEOS-Chem Hg model S1.1 Anthropogenic emissions Anthropogenic emissions of Hg0 and HgII are derived from the global historical Hg emissions inventory of Streets et al. [2011]. Total present-day global emissions from this inventory of 2000 Mg a-1 are similar to those from the recent United Nations Environment Programme report of 1960 Mg a-1 [UNEP, 2013]. However, trends since 1990 in the two inventories differ from one another [Wilson et al., 2010], and from a third inventory currently in preparation that shows a decline in Hg emissions to the atmosphere when commercial product use is included [Horowitz et al., 2013]. Here, we use the Streets et al. [2011] inventory as it is the only published inventory that covers our entire simulation period (1979-2008), and we discuss the sensitivity of our trend results to assumed emission trends. The choice of emissions inventory does not affect simulation of interannual variability, which is the main focus of this work. The inventory provides regional totals for each decade. We distribute these totals within each region on the basis of present-day distributions [Pacyna et al., 2010] and then interpolate between decades to create annuallyresolved emissions at the 4°x5° resolution of the GEOS-Chem grid. The emissions do not vary seasonally. Following Amos et al. [2012], we emit particulate Hg as HgII and allow it to partition thermodynamically between the gas and aerosol phases. S1.2 Polar bromine chemistry As in Fisher et al. [2012], we assume that fast atmospheric bromine radical generation driving AMDEs takes place in GEOS-Chem grid squares with (1) at least 10% sea ice cover in at least 50% of native resolution (0.5°x0.667°) grid squares and less than 100% total sea ice cover, (2) surface incident shortwave radiation greater than 100 W m-2 [Pöhler et al., 2010], and (3) surface temperature less than 273 K. Fisher et al. [2012] used a step function for the relationship between BrO concentration and 2-meter air temperature T, but this is not well-suited for investigating interannual variability. Here we have updated it to the following linear function: [BrO] = 20 pptv [BrO] = (253 K – T) + 20 pptv [BrO] = 0 pptv T ≤ 253 K 253 K < T ≤ 273 K 273 K < T (S1a) (S1b) (S1c) The slope and endpoints of this relationship were chosen to optimize simulation of both current spring Hg0 concentrations (as in Fisher et al. [2012]) and the shift of peak depletion at Alert from May in the late 1990s to April in the mid 2000s [Cole and Steffen, 2010]. The resulting range of BrO concentrations is consistent with the limited observations in the Arctic boundary layer [Pöhler et al., 2010; Friess et al., 2011; Prados-Roman et al., 2011]. BrO is assumed to be well-mixed in the atmospheric boundary layer diagnosed from the MERRA meteorological fields. Br concentrations are inferred from local Br-BrO-O3 photochemical equilibrium assuming 5 ppbv O3 [Holmes et al., 2010; Fisher et al., 2012]. S1.3 Oceanic photoreduction Aqueous HgII photoreduction in marine environments is induced by radiation at UV-B (280-315 nm), UV-A (315-400 nm), and visible wavelengths, with high-energy UV-B radiation being the most efficient [Amyot et al., 1997; Bonzongo and Donkor, 2003; O'Driscoll et al., 2006; Qureshi et al., 2010; Oh et al., 2011]. Depletion of Arctic stratospheric ozone has increased the UV-B flux over the past 30 years [Bais et al., 2011]. Laboratory studies show that 40-50% more Hg0 is produced under irradiation by UV-B than UV-A at light intensities characteristic of natural systems [O'Driscoll et al., 2006; Oh et al., 2011]. Based on the results of O’Driscoll et al. [2006], we assume that half of the total reducible pool (40% of dissolved oceanic HgII for present day [Soerensen et al., 2010]) is reducible by all wavelengths of solar radiation and half is reducible only by UV-B. The reducible fraction of HgII (fred) for each ocean grid square is thus computed as: fred = 0.2 + 0.2(Ω / Ω0 )-1.23 (S2) where Ω is the observed ozone column for each month and Ω0 is the present-day (2006-2010) mean ozone column for that location. The exponent in Equation S2 reflects the relationship between UV Index (weighted to UV-B radiation) and Ω [Madronich, 2007]. For Ω and 0 we use monthly mean data from the TOMS/SBUV satellite instrument (available from http://acdbext.gsfc.nasa.gov/Data_services/merged/), regridded to 4°x5°. Missing data are replaced with the climatological (1971-2010) mean value for the given location and month. In calculating the total HgII photoreduction that occurs in the surface ocean, all solar radiation (visible and UV) is attenuated with depth as described by Soerensen et al. [2010]. We do not compute separate attenuation coefficients for visible and UV-B radiation. S1.4 Arctic Ocean productivity Net primary productivity (NPP) in the ocean impacts surface ocean Hg cycling through both biological reduction and export of particulate Hg to subsurface waters, with increased NPP generally leading to decreased surface ocean Hg. In previous versions of GEOS-Chem, NPP distributions were based on observations from one year of MODIS satellite data [Soerensen et al., 2010], with missing data replaced by a constant Arctic value. Here we replace missing MODIS values (mainly in the central Arctic Ocean) with monthly mean NPP estimates from the POP-ICE ice-ocean-ecosystem model for the year 2009 [Jin et al., 2011]. Increased light availability in the Arctic Ocean driven by recent declines in sea ice cover has resulted in increased NPP in ice-free waters [Arrigo et al., 2008; Wassmann et al., 2010; Arrigo and van Dijken, 2011]. Phytoplankton growth in the Arctic is also limited by nutrients [Popova et al., 2010; Tremblay et al., 2012], and this is likely to play an increasingly important role for whole basin productivity in future [Wassmann, 2011; Hill et al., 2013]. Here we focus on the change in productivity between ice-free and ice-covered waters since this appears to be the dominant source of variability in NPP over the past several decades [Arrigo and van Dijken, 2011]. We simulate IAV in Arctic NPP based on the work of Arrigo and van Dijken [2011], who used 1998-2009 observations to derive a relationship between annual Arctic NPP and maximum summer sea ice extent, which they then applied to estimate NPP from 1979-1997. We use their observed and estimated NPP to construct an annual scaling factor that we apply to the gridded monthly mean Arctic NPP from MODIS/POP-ICE. S1.5 Riverine inputs Riverine inputs of HgII to the Arctic Ocean are as described by Fisher et al. [2012]. The source extends from May to October and depends on both the riverine Hg concentration and the total freshwater discharge. We use riverine Hg concentrations that are a factor of three higher during freshet (May-June) than during the rest of the year [Leitch et al., 2007; Graydon et al., 2009; Emmerton et al., 2013]. There is evidence that permafrost melt has increased the export of Hg to Arctic lakes [Klaminder et al., 2008; Rydberg et al., 2010] but the implications for Hg mobilization in river basins and associated riverine Hg concentrations remain unclear. More work has addressed the impacts of permafrost melt on dissolved organic carbon (DOC), which is strongly associated with Hg [Ravichandran, 2004; Schuster et al., 2011]. Results from these studies have been mixed. Most basins indicate decreased DOC export with increased permafrost melt while others (principally in West Siberia) indicate increased DOC export [Frey and McClelland, 2009]. Recent work by O’Donnell et al. [2012] in the Yukon basin shows decreasing DOC with increasing permafrost-induced groundwater flow, potentially driven by increased sorption of DOC to soils and thermokarst formation [Kawahigashi et al., 2006; Prokushkin et al., 2007]. Given the substantial uncertainty surrounding the relationship between riverine Hg concentrations and permafrost melt, we are unable to estimate how river Hg inputs have varied based on changes in the Arctic landscape over the last 30 years. We thus simulate variability in river Hg inputs based only on changes in freshwater discharges, with constant concentrations inferred as described in Fisher et al. [2012]. The sensitivity of our results to the assumed river Hg concentrations is discussed in Section S3. Freshwater discharge amounts are from the Arctic Rapid Integrated Monitoring System (ArcticRIMS) database (http://rims.unh.edu/index.shtml). Since our simplified Hg model for the Arctic Ocean does not include lateral flows in the surface mixed layer, we use a mean riverine input term rather than basin-specific estimates [Fisher et al., 2012]. The three largest Russian rivers (Yenisei, Lena, Ob) account for on average 78% of the total freshwater discharge term and so their discharge amounts are used to define IAV, applied as an interannual scaling factor calculated independently for each month. S2. Statistical Methods In sections 4 and 5, we use multiple linear regression (MLR), principal component analysis (PCA), and principal component regression (PCR) to relate variability in observed and simulated Arctic Hg to a range of meteorological drivers. Here we briefly describe the methods involved. We apply the following standardized MLR model: y(t) - y x (t) - xk (S3) = å bk k sy sk k where t is the year, y(t) represents the 2-month mean Hg concentrations (ng m-3 for atmospheric Hg0, pM for surface ocean HgT), xk(t) are the meteorological variables (Table S1), 𝑦̅ and 𝑥̅ 𝑘 are the multi-year temporal means, sy and sk are the standard deviations, and βk are the normalized regression coefficients. Because the variables are standardized during the MLR, the βk are dimensionless and can be directly compared for different independent variables [Tai et al., 2012]. Non-standardized regression coefficients βk* in units of ng m-3 dk-1 or pM dk-1 (where dk is the unit of variable xk) can be computed from βk* = (sy/sk)βk. To account for correlation between the meteorological variables, we select a subset of relevant variables for use in a stepwise regression with terms added and deleted repeatedly to obtain a best fit based on the Akaike Information Criterion [Tai et al., 2010]. We apply a PCA to the standardized meteorological variables listed in Table S1, following the method described previously by Tai et al. [2012] for analysis of the normal climatic modes driving variability of particulate matter concentrations in the U.S. The principal components (PCs) represent orthogonal (uncorrelated) linear combinations of the meteorological variables and thus can be viewed as representing the normal modes of the system. We construct a time series for each of the PCs: x (t) - xk U j (t) = åa kj k sk k (S4) where Uj(t) represents the 2-month mean value of PC j in year t, and αkj are the elements of the orthogonal transformation matrix from the PCA, which represent the relative importance of each variable to the PC. We then perform a principal component regression (PCR; [Jeffers, 1967]) to identify the relationships between Hg concentrations and climatic modes: y(t) - y = åg kU j (t) sy k (S5) where γk are the coefficients of the PCR. S3. Sensitivity to assumed riverine Hg The Hg flux from circumpolar rivers to the Arctic Ocean is highly uncertain. Measurements of Arctic riverine Hg are extremely rare, especially in the very large Russian rivers, and are unlikely to have captured periods of peak Hg flux as discussed in Fisher et al. [2012]. In this work, we assume a significantly higher total riverine flux (80 Mg yr-1; [Fisher et al., 2012]) than previously calculated from bottom-up estimates (5-39 Mg yr-1; [Outridge et al., 2008]). To test the influence of our riverine Hg assumptions on our results, we performed a sensitivity simulation with the riverine Hg flux decreased by a factor of 10 for the entire 30-year simulation (plus spin-up). As expected from Fisher et al. [2012], without the high riverine flux, the model is unable to reproduce the magnitude of observed concentrations in the Arctic atmosphere and ocean in summer. However, the large decrease in riverine Hg has very little impact on the simulation of interannual variability (IAV), the focus of this work. This largely reflects the fact that in summer when freshwater discharge is at its peak, its IAV is less than 10% of the total magnitude. IAV is higher in May (when we find it has some influence on ocean HgT in the original simulation), but overall fluxes are much smaller then. Table S2 compares the statistical results given in Sections 3, 4 and 5 for the original simulation with those computed from the sensitivity simulation. As seen in the table, the change in river Hg has little impact on the ability of the model to simulate observed IAV at Alert and Zeppelin, with virtually no change in spring and a small reduction in skill in summer. The principal components (PCs) used to describe atmospheric variability are computed solely from the environmental drivers given in Table S1 and therefore do not change between the two simulations. Principal component regression between the PCs and atmospheric Hg0 is nearly identical between the original and sensitivity simulations. In the ocean, simulated HgT is even more strongly correlated with the simulated meltwater flux in the sensitivity simulation than in the original simulation, reflecting the reduced influence from the variable river flux. In both cases, the meltwater term is clearly dominant. The multiple linear regression results from the original simulation (with contributions from wind speed, solar radiation, May surface air temperature, and May freshwater discharge) can explain 54% of simulated HgT variability in the sensitivity simulation (versus 55% in the original simulation). Stepwise multiple linear regression of ocean HgT from the sensitivity simulation shows solar radiation and wind speed (in that order) to be the dominant drivers of ocean HgT variability when the river flux is decreased, together explaining 48% of the variability. 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