Title: Voxel based analysis in neuroferritinopathy determines clinical correlates of disease severity. MJ Keogh et al. Online Resources Cerebellar Volume / Total IntraCranialVolume 0.14 0.13 0.12 0.11 0.10 0.09 0.08 0.07 0.06 Controls Patients Figure 1. Total cerebellar volumes as determined by serial ROI assessment of 3D-T1w axial slices and normalised to total intra-cranial volume. The plot shows individual subject data points and mean cerebellar volumes + standard deviation of the mean for patients and controls. There was a significant difference between the two groups (p<0.001, unpaired t-test). Intra-rater reliability had a coefficient of variation of 3.6% as determined from repeated measurements made on one dataset on three separate occasions each spaced 7 days apart. Figure 2. Image intensities and probability data in the dentate region in (a) qualitative T1w raw images, (b) unsmoothed T1w GM segmented images, (c) smoothed T1w GM segmented images, (d) quantitative T2 maps, (e) smoothed 8 voxel T2 VBR images. Figure 3: Delineation of ROIs of regions detected to correlate with UDRS score on T1 images in a single patient (a) head of caudate, (b) lateral GPi Figure 4. Image intensities and probability data in the globus pallidus internus (a) qualitative T1w raw images, (b) unsmoothed T1w GM segmented images, (c) smoothed T1w GM segemented images, (d) quantitative T2 maps, (e) smoothed 8 voxel T2 VBR images. Figure 5: T1w slice through the cerebellum in a control subject and patient with neuroferritinopathy (top row). Outlined in red are corresponding lateral aspects of the right dentate nuclei, with iron deposition and cavitation seen in the patient. Bottom row: smoothed grey matter segmented slices through the same region showing that the dentate nucleus in the patient is in a region with increased signal intensity. Figure 6: T2w slice through the cerebellum in a control subject and patient with neuroferritinopathy (top row). Outlined in red are corresponding lateral aspects of the right dentate nuclei, with iron deposition and cavitation seen in the patient. Bottom row: quantitative T2 maps through the same region following smoothing which show that the dentate nucleus in the patient is in a region with similar intensity to the control. Figure 7. T1w image intensities and probability data of the caudate nucleus and lateral globus pallidus. Left – caudate: (a) raw T1w image intensity, (b) unsmoothed grey matter segmented probability, and (c) smoothed grey matter probability against patient UDRS score for 9 patients. Right – Globus pallidus internus: (a) raw image intensity, (b) unsmoothed grey matter probability, and (c) smoothed grey matter probability against patient UDRS score for all 10 patients. *p<0.05, ** p<0.005. Cluster-level P(corr) Size (voxels) <0.001 244 <0.001 221 <0.001 1099 <0.001 <0.001 124 73 Voxel-level p(uncor) <0.0001 <0.0001 <0.0001 <0.0001 <0.0001 <0.0001 <0.0001 T-value 23.57 22.89 21.70 19.43 14.70 9.30 8.79 Coordinates x y -16 14 -8 8 10 15 -18 Area z -52 -53 -14 -14 -7 -25 -26 side -35 -33 -8 -8 -3 11 2 L R L R R R L Posterior cerebellar lobe, dentate nucleus Posterior cerebellar lobe, dentate nucleus Left mid brain/substantia nigra Right midbrain/substantia nigra Right sub lobar extranuclear white matter Right thalamus/pulvinar Left thalamus Table 1. Grey matter segmented VBM analysis of patients compared to controls (Pt > controls) (n=10). Voxel size 2x2x2 mm3. Only voxel level significance considered. A threshold of T=7.088, P<0.05 (FWE) was used between groups. Cluster-level P(corr) Size (pixels) <0.001 3474 Voxel-level p(corr) <0.001 6373 <0.0001 <0.0001 <0.0001 <0.0001 <0.001 <0.001 <0.001 188 21 23 <0.0001 <0.0001 <0.0001 <0.0001 T-value 19.31 18.46 12.79 15.42 14.86 14.24 11.72 10.53 9.94 Coordinates x y -14 10 -16 -38 14 -29 16 -5 17 Area z -1 -1 -30 -60 -76 -68 -30 -91 -34 side -5 -5 3 -31 -30 -28 4 -4 64 L R L L R L R L R Lentiform nucleas/medial globus pallidus Sub lobar, extra nuclear white matter Thalamus Posterior cerebellar lobe (Tuber) Posterior cerebellar lobe (pyramis) Posterior cerebellar lobe (Pyramis) Thalamus Occipital lobe, lingual gyrus Pre central gyrus Table 2. White matter segmented VBM analysis of patients compared to controls (controls > patients) (n=10). Voxel size 2x2x2 mm3. Only voxel level significance considered. A threshold of T=7.17, P<0.05 (FWE) was used between groups. Group Controls (n=10) Patients (n=10) Dentate nucleus T1w T2w Iron deposition Cavitation Iron deposition Cavitation 1 (10%) 0 (0%) N/A N/A 10 (100%) 1 (10%) 10 (100%) 2 (20%) Globus pallidus internus T1w T2w Iron deposition Cavitation Iron deposition Cavitation 4 (40%) 0 (0%) N/A N/A 10 (100%) 9 (90%) 10 (100%) 9 (90%) Table 3. Clinical neuroradiology assessment of the dentate nucleus and globus pallidus internus of raw T1w and T2w images of patients and controls. Clinical interpretation of relative T1w hyperintensity and hypointensity consistent with iron deposition and cavitation respectively, were recorded for both regions in patients and controls. T2w hypointensity and hyperintensity consistent with iron deposition and cavitation respectively were recorded in patients only due to a lack of T2w images for controls. Cluster-level Voxel-level P(uncorr) Size p(uncor) (pixels) Negative correlation with UDRS score 0.011 0.011 0.007 0.004 85 85 96 113 <0.0001 <0.0001 <0.0001 <0.0001 T-value 7.66 7.13 6.83 6.34 Coordinates x y 10 -10 16 -20 Area z 8 9 -2 -6 side 14 10 4 5 R L R L Right caudate body Left caudate body Right lentiform and lateral GP Left lentiform and lateral GP Table 4:Grey matter weighted VBM correlation analysis with UDRS score (n=10). Voxel size 2x2x2 mm3. Only voxel level significance considered. An threshold of T=4.8, p<0.001 uncorrected was used. Study Imaging modality Number of patients Brain region Globus Pallidus 38% hypointensity Putamen Caudate Thalamus Dentate 28% hypointensity 14% hypointensity 19% hypointensity 95% hypointensity Substantia Nigra 81% hypointensity McNeil et al 2008[2] T2* 21 Keogh et al 2012[1] T2* 9 Iron deposition in infancy - Iron deposition in adulthood Iron deposition in teens - Iron deposition in infancy McNeil et al 2011[3] T2 10 60% cavitation 10% cavitation 20% hypointense 90% hypointense R2* 10 50% cavitation, 10% hypointense, 20% EOTT No correlation assessed No R2* correlation with disease 10 Rim R2* positive correlation with UDRS T1 hyperintensity in patients - T1 Rim R2* negative correlation UDRS T1 hyperintensity in patients 50% hypointense, 40% hyperintense, 10% cavitation - T1 hyperintensity in patients T1 hyperintensity in patients This study Increasing cavitation correlates with UDRS Increasing T1 intensity correlates with UDRS Cortex Cerebellum Motor cortex only affected (71%) Iron deposition in adulthood (motor cortex only) Motor cortex and lingual gyrus shows evidence of iron deposition Cerebellar atrophy present Table 5. A table outlining the results of previous neuroimaging studies in neuroferritinopathy together with the new findings from this study. All data relate to abnormal findings in patients. References 1. Keogh MJ, Jonas P, Coulthard A, Chinnery PF, Burn J (2012) Neuroferritinopathy: a new inborn error of iron metabolism. Neurogenetics 13:93-96 2. McNeill A, Birchall D, Hayflick SJ, Gregory A, Schenk JF, Zimmerman EA, Shang H, Miyajima H, Chinnery PF (2008) T2* and FSE MRI distinguishes four subtypes of neurodegeneration with brain iron accumulation. Neurology 70:1614-1619 3. McNeill A, Gorman G, Khan A, Horvath R, Blamire AM, Chinnery PF (2012) Progressive Brain Iron Accumulation in Neuroferritinopathy Measured by the Thalamic T2* Relaxation Rate. AJNR Am J Neuroradiol