Scientific Discourse Grammar
SCIENTIFIC DISCOURSE GRAMMAR
by Irene Voulgaris
In this work I will mainly examine the basic grammar, structure and rhetorical markers
used in each part of a scientific paper. To be more precise, I will take a look at a literature
and research review in an area of food technology, making reference to relevant
academic writing conventions in the process. Ι will also provide some comments on its
citation style.
An authentic e-published paper on food-technology
Let’s take a look at a paper describing starter cultures for cheese processing. The paper
is entitled: “Lactic Acid Bacteria as Starter-Cultures for Cheese Processing: Past,
Present and Future Developments”. (Kongo, 2013)i It appears to form a chapter of a
book in an area of food technology and I have uploaded it as a pdf file on my blog,
http://teacherofesol.wordpress.com, where you can find it on my post of Feb 2, 2014. The
paper is a copyrighted work. However, the fact that it is an open access online publication
distributed under the terms of the Creative Commons Attribution License:
http://creativecommons.org/licenses/by/3.0
allows its unrestricted use, distribution, and reproduction in any medium, provided the
original work is properly cited.
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Scientific Discourse Grammar
Reading skill:
Previewing
It is always wise to see what a long piece of writing is about by previewing it first; that is,
by reading only its title, its abstract or introduction, its subtitles and its conclusion. In this
way, you will quickly get an idea of its topic and how this topic is developed throughout
the text, without having to read it all.
Download the paper (Kongo, 2013) and preview it for a start.
The paper’s organization
The paper consists of the following parts:
1. Introduction
2. Lactic acid bacteria in dairy processing
2.1. LAB as starter-cultures in cheese processing
2.2. LAB food safety and cheese technology
3. Development of new starter cultures for cheese processing
3.1. EPS-producing cultures and acceleration of cheese ripening
3.2. Methods used to characterize LAB for starter cultures development
4. Concluding remarks
Author details
5. References
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Scientific Discourse Grammar
Reading skill:
Reading for gist
After previewing the paper, read it carefully in order to understand the main points made
by its author.
Previewing and careful reading of the whole paper have enabled us to understand its
content. Having done that, we will now analyze each part of the paper, this time focusing
on its discourse grammar.
Let’s start with the paper’s introduction:
Introduction
The identification of solutions to improve the life and health of consumers, providing
safe and nutritious foods, is the major concern in Food Science. Toward that goal,
preservation methods such as salting, drying, high/low temperature application,
fermentation, and more recently, pulsed electric field, high pressure and radiation –
alone or in combination –are applied. The chosen method depends on various
factors such as the type of raw materials, availability of the method, cost,
effectiveness and degree of change it causes to the flavour and nutritional features
of the food product. Fermentation, which is also called biopreservation, is a cheap,
widely accessible method that meets today’s increasing consumers’ demand for
minimally processed/preserved food products. Biopreservation with lactic acid
bacteria (LAB) is indeed one of the oldest and highly efficient forms of non-thermal
processing methods. Cheese production is based on the ability of lactic acid
bacteria to ferment sugars, especially glucose and galactose, so to produce lactic
acid and aroma substances that give typical flavours and tastes to fermented
products. Lactic acid bacteria also release bacteriocins, antimicrobial metabolites,
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Scientific Discourse Grammar
which are considered safe and natural preservatives, with great potential to be used
on their own, or synergistically with other methods in food preservation.
Notes on the grammar and structure of the paper’s introduction
What does the writer do in the introduction?
Present simple tenses for descriptive texts
In the introduction the writer refers to the role of food technology today, to existing food
preservation methods and to the method of biopreservation with lactic acid bacteria in
particular, as the optimum method for cheese production. Thus, the writer’s intention in
the introduction is informative and descriptive. After making a brief reference to
contemporary food preservation methods, he focuses on one such method in particular:
biopreservation with lactic acid bacteria.
Which verb tense does the writer use?
Now, let’s take a look at the verb tenses the writer has used to inform us about these
methods and to briefly describe them.
All sentences in the paper’s introduction contain verbs in the present simple tense.
Some of these tenses are in the active voice and I have highlighted them in yellow, while
others are in the passive. I have both highlighted and underlined the verbs which are in
the passive voice.
The writer has used the present simple tense to tell us what preservation methods are
available today, which one is the most suitable for optimum cheese production, and what
this method is like. Thus, basically, the present simple has been used to describe
things existing today and the text is a descriptive one.
Therefore, in general, we use the present simple with descriptive texts which refer to the
present.
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Scientific Discourse Grammar
When is the passive present simple used in descriptive texts?
When we do not need to mention the fact that the human factor is the agent of an action
or process (as is usually the case in scientific discourse) we use the passive present
simple tense instead of the active. For example, in the sentence “Fermentation, which is
also called biopreservation,…” the writer has used the passive present simple tense “is
called” because fermentation is also called “biopreservation” by people. The agent “by
people” does not need to be mentioned. In conversational English, one could say the
same by using the active present simple: “Some people also call fermentation
“biopreservation”.
Impersonal style in scientific writing
When you write a scientific paper, there are specific linguistic conventions that you are
expected to follow. One of these conventions is to sound as impersonal as possible by
avoiding the use of the active voice and by using the passive, or impersonal structures
instead. Moreover, even when passive structures are used, the agent of the sentence is
omitted. It is not difficult to figure out why this convention has been established in
academic writing in scientific disciplines. Given the fact that the human factor has always
been the agent of experiments, of man-made or industrial processes and of scientific
discourse in general, scientists are not concerned with questions like who does an
experiment or who controls a process. Instead, they focus on the experiment or on the
process itself. This is why they use the passive voice without mentioning the agent; that
is, without mentioning the scientist (agent) who does the experiment or who controls the
process. It would sound too repetitive if they did.
Reading skill:
Scanning
When we want to locate specific information in a text, we read quickly through it in order
to find what information we are looking for. This reading skill is known as ‘scanning’.
Exercise involving scanning:
1. What does the expression “toward that goal” in the 3 rd line refer to?
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Scientific Discourse Grammar
2. Which preservation methods are used for producing healthy and wholesome foods?
3. Name the factors which must be taken into consideration when making the choice of
preservation method.
4. Define “biopreservation”.
5. In what ways do lactic acid bacteria act during the process of fermentation?
Notes on discourse markers (also called rhetorical markers or linking
words or linking devices)
a. back reference discourse markers
To refer to something we have mentioned earlier in a text we use back reference
discourse markers. These are words or phrases that refer back to something we have
already mentioned. For example, the phrase “Toward that goal” in the 3rd line serves
this purpose. The writer used it to refer back to the goal of food science mentioned in the
previous sentence:
“The identification of solutions to improve the life and health of consumers, providing safe
and nutritious foods, is the major concern in Food Science. Toward that goal,
preservation methods such as…”
[In the paragraph above I have used the word “it” in the 4th line to refer back to the
expression “Toward that goal”.]
In this way, we avoid repetition and the text becomes more cohesive.
b. enumeration discourse markers
When we provide a list in order to illustrate the various specific forms a more general
term, a cover term, encompasses, then we enumerate them; that is, we name them one
by one, separated by commas, sometimes after the expression “such as”. In such
cases, “such as” is an enumeration marker. The expression “such as” lets the readers
know that we are going to offer them a list of relevant forms. We also enumerate when
we want to provide a list of factors / solutions / causes / consequences / results, etc.
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Scientific Discourse Grammar
There are the following instances of enumeration in the text:
preservation methods (cover term) such as (enumeration marker) salting,
drying, high/low temperature application, fermentation, (enumeration) and
more recently, pulsed electric field, high pressure and radiation (enumeration) –
alone or in combination – may be applied.
The chosen method depends on various factors (cover term) such as
(enumeration marker) the type of raw materials, availability of the method,
cost, effectiveness and degree of change it causes to the flavour and
nutritional features of the food product.(enumeration)
Notes on sentence structure
non-defining relative clauses
“Fermentation, which is also called biopreservation, (non-defining relative clause) is a
cheap, widely accessible method that meets today’s increasing consumers’ demand for
minimally processed/preserved food products.”
Non-defining relative clauses are separated from the rest of the sentence by commas.
They contain additional information about the subject or the object of the sentence; this
information is not essential in order to understand the meaning of the sentence. It is just
extra information.
apposition
Apposition is usually a noun phrase separated by commas which appears immediately
after another noun or noun phrase. Both of these noun phrases refer to the same person
or object.
There are the following instances of apposition in the text:
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Scientific Discourse Grammar
Cheese production is based on the ability of lactic acid bacteria to ferment sugars
(noun), especially glucose and galactose, (noun phrase introduced with
“especially”&
also
apposition
introduced
with
“especially”
for
expressing
particularization; in our case particular kinds of sugars) so to produce lactic acid
and aroma substances that give typical flavours and tastes to fermented products.
Lactic acid bacteria also release bacteriocins (noun), antimicrobial metabolites,
(noun phrase & also apposition for providing a synonym for “bacteriocins” which is
more easily understood: “antimicrobial metabolites”) which are considered safe and
natural preservatives, with great potential to be used on their own, or synergistically
with other methods in food preservation.
Let’s move to the 2nd part of the paper now:
2. Lactic acid bacteria in dairy processing
Milk is (present simple) a highly perishable food raw material, therefore (linking
word signalling result), its transformation in cheese or other form of fermented dairy
product provides (present simple) an ideal vehicle to preserve its valuable nutrients
(Table 1), making them available throughout the year. It is known ( impersonal
passive present simple used instead of the active present simple “we know”) that
while (linking word signalling contrast) unprocessed milk can be stored for only a
few hours at room temperatures, cheeses may reach a shelf-life up to 5 years
(depending on variety).
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Scientific Discourse Grammar
Fermentation with lactic acid bacteria (LAB) is (present simple) a cheap and
effective food preservation method that can be applied even in more rural/remote
places, and leads (present simple) to improvement in texture, flavor and nutritional
value of many food products. LAB have (present simple) a long and (linking word
signalling addition) safe history of application and consumption namely (linking
word signalling a specific example) in cheese processing (Aquilanti et al., 2006,
Caplice & Fitzgerald, 1999, Giraffa et al., 2010, Ray, 1992; Wood, 1997; Wood &
Holzapfel, 1995) thus (linking word signalling result) being generally regarded as
safe (GRAS). Increasing knowledge of LAB physiology, together with new
developments in processing technology, is leading (present continuous to denote
that the action expressed by the verb is taking place now and that there is a trend
to continue taking place in the future) to their application beyond traditional starter
culture application, namely (linking word signalling specific cases/examples) in new
food safety roles and direct health applications.
2.1. LAB as starter cultures in cheese processing
Cheese-making is based (passive present simple) on application of LAB in the form
of defined or undefined starter cultures that are expected (passive present simple)
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Scientific Discourse Grammar
to cause a rapid acidification of milk through the production of lactic acid, with the
consequent decrease of pH, thus (linking word signalling result) affecting a number
of aspects of the cheese manufacturing process and ultimately (linking word
signalling reinforcement/emphasis) cheese composition and quality (BriggilerMarco et al., 2007).
[Below the writer describes how cheese used to be produced in the past. This is why he
uses simple past tenses which I have highlighted in blue.]
The earliest productions of cheeses were based (passive past simple) on the
spontaneous fermentation, resulting from the development of the microflora
naturally present in the raw milk and its environment. The quality of the end product
was (past simple) a reflex of the microbial load and spectrum of the raw material.
Spontaneous fermentation was later optimized (passive past simple) through
backslopping, i.e. (abbreviation of the Latin words id est that is used to explain
what you have mentioned previously), inoculation of the raw material with a small
quantity of whey from a previously performed successful fermentation, and the
resulting product characteristics depended (past simple) on the best-adapted
strains dominance (Leroy & De Vuyest, 2004).
Note on the use of the simple past tense
Simple past tense for descriptions referring to the past
The writer uses the simple past tense to describe what the production of cheese used to
be like in the past. He uses the passive past simple tense whenever he wants to focus on
man made processes as they used to be carried out in the past.
We use the simple past tense to describe the way we used to do something in the past.
We also use it to describe something as it was in the past. Thus, one of the uses of the
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Scientific Discourse Grammar
simple past tense is to describe past habits as well as people, living organisms,
anorganic life, objects and places in the way they were in the past.
[Below the writer returns to the present time, so he uses simple present verb tenses
once again.]
Today, backslopping is still used (passive present simple) to produce many
artisanal raw-milk cheeses, namely (linking word signalling a specific example)
those bearing the PDO (Protected Designation of Origin) status, which are
considered (passive present simple) to be an important source of LAB genetic
diversity, as well as (linking phrase signalling addition) being crucial from an
economic and even ecologic point of view, since (linking word signalling reason)
production of said cheeses (usually processed on a small-scale) contributes
(present simple) to local employment and maintains (present simple) people
functioning as “guardians of local environment” in regions that otherwise would be
deserted.
The starter-culture (which is) applied (passive present simple) in this, so-called,
natural fermentation, is (present simple) usually a poorly-known microflora mix that
although
having
a
predominance
of
LAB,
may
also
contain
non-LAB
microorganisms, and its microbial diversity and load is (present simple) usually
variable over time. In fact, studies directed to characterize traditional cheeses show
(present simple) that those (which are) made (passive present simple) from raw
milk harbor (present simple) a diversity of LAB (Bernardeau et al., 2008) depending
on geographical region, where a few may show particular interesting technological
features that upon optimization may have industrial applications (Buckenhiiskes,
1993). For example, because (linking word signalling reason) wild strains need
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Scientific Discourse Grammar
(present simple) to withstand the competition of other microorganisms to survive in
their hostile natural environment, they often produce (present simple) antimicrobial
substances (which are) called (passive present simple) bacteriocins (Ayad et al.,
2002), which are (present simple) natural antibacterial proteins that can be
incorporated directly into fermented foods as such (food-grade) or indirectly as
starter culture (Bernardeau et al., 2008). Although (linking word signalling
contrast) nisin is
(present simple) today the only bacteriocin that has reached
(present perfect tense to denote the present result of an action that started in the
past) commercial status, approved worldwide as a natural food preservative, many
other bacteriocins may soon reach similar status. Recently, our work (to be
published) with LAB isolates from traditional portuguese raw-milk cheeses, revealed
(past simple) several lactobacilli having antibacterial activity against pathogens
such as (linking word signalling exemplification) Listeria monocytogenes,
Staphyloccus aureus, Salmonella newport and even E. coli. Future studies may
allow us using these isolates or their metabolites, applied in situ or ex situ fashion,
in applications where food safety is a concern.
Moreover, traditional cheeses also obtain their flavor intensity also from the nonstarter lactic acid bacteria (NSLAB), which are not part of the normal starter flora
but develop in the product, particularly during maturation, as a secondary flora
(Beresford, et al., 2001). The isolation and optimization of wild-type strains from
traditional products, to be used as starter cultures in cheese processing, is indeed a
highly active field of research in Food Science today.
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Scientific Discourse Grammar
2.2. LAB food safety and cheese technology
Cheese is made in almost every country of the world and (linking word signalling
addition) there are more than 2000 varieties which are made from milk of several
mammals, and are processed industrially or by traditional methods.
However (linking word signalling contrast), despite (linking word signalling
constrast) the large number of varieties, the basic steps which are required in any
cheese processing are essentially the same, and slight variations in any of these
steps may result in products of different general quality (Figure 2).
Milk treatment. In large-scale cheese processing, the milk is heated, e.g. 73°C for
15 seconds, to destroy pathogens and reduce microbial numbers, while (linking
word signalling contrast) in most traditional Protected Designation of Origin raw-milk
cheeses heat treatment is not applied. Also (linking word signalling additional
information) the milk may be standardized, i.e. the fat content may be increased or
(linking word signalling alternative way) reduced, or the casein-to-fat ratio may be
adjusted.
Starter-culture addition. The type of commercially available starter preparation to
be used is determined by the cheese recipe. As previously stated (back reference
clause), large-scale processing relies on using defined, commercially available
starters, while (linking word signalling contrast) for traditional cheeses, a natural
fermentation (whey from the previous lot) is often used.
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Scientific Discourse Grammar
Figure 2. Common steps to most cheese making processes
Milk treatment
Coagulation
Whey draining
Salting/Pressing
Ripening
Coagulation. During (linking word signalling duration, length of time) coagulation,
modifications on the milk protein complex occur under defined conditions of
temperature and by action of a coagulant agent, which changes the physical aspect
of milk from liquid to a jelly-like mass. Various coagulants are available, e.g.
(abbreviation of the latin words exempli gratia signalling exemplification) lemon
juice, plant rennet or more commonly a proteolytic enzyme such as (linking device
signalling exemplification) chymosin (rennin) or (linking word signalling alternative
way)– due to (linking device signalling reason) high demand from the cheese
industry – proteolytic enzymes from the mould Rhizomucor miehei that are obtained
via biotechnology. These enzymes (back reference noun phrase used to refer back
to the proteolytic enzymes) have an acidic nature, meaning they (back reference
word used to refer back to the proteolytic enzymes) have optimum activity in a
slightly acidic environment. Therefore (linking word signalling result), the action of
lactic acid bacteria in this phase (back reference noun phrase used to refer to the
phase of coagulation) is crucial as (linking word signalling reason) they (back
reference word used to refer back to lactic acid bacteria) are required to rapidly
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Scientific Discourse Grammar
release enough lactic acid, to lower the milk pH from 6.7 to near 6.2, thus (linking
word signalling result) creating an appropriate environment for optimum activity of
rennin) and later to pH 4.5 as (linking word signalling process progression) the
processing proceeds, creating an inhospitable environment for many unwanted
bacteria, thus (linking word signalling result) increasing the end product safety.
Cutting the coagulum. The resulting coagulum is cut with appropriate knives into
curd particles of a defined size, e.g. 1-2 cm, or it (back reference word used to refer
back to the resulting coagulum) is transferred into containers or cheese moulds.
The cutting or ladling of the coagulum is a very important step in the manufacture of
some cheese varieties as (linking word signalling reason) it (back reference word
which refers back to the cutting or ladling of the coagulum) determines the rate
of acid development and the body (firmness) and texture of the cheese.
Heating or cooking the curds. Heating (37-45°C, depending on the type of
cheese) the curds and whey affects the rate at which whey is expelled from the
curd particles and the growth of the starter microorganisms. During (linking word
signalling duration) heating, the curds and whey are often stirred to maintain the
curd in the form of separate particles.
Whey removal. After heating and stirring (linking phrase signalling succession),
and when the curd particles have firmed and the correct acid development has
taken place, the whey is removed allowing the curd particles to mat together.
Milling the curd. In cheeses such as (linking device signalling exemplification)
Cheddar, when the curd has reached the desired texture, it (back reference word. It
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Scientific Discourse Grammar
refers back to the curd.) is broken up into small pieces to enable it (back reference
word that refers to the curd again) to be salted evenly. Milling the curd is done
either (linking device used in conjunction with ‘or’ denoting one of two ways, etc) by
hand or mechanically. Salting is usually done to enhance the taste of the curd and
to increase its safety and shelf life.
Ripening. Finally (linking word signalling the last step of the process), for most
cheeses, the resulting mass is molded and (it is) put to ripening for periods that
vary from 15 days to one, two or more years. Ripening is a slow phase, crucial for
the development of aroma and flavor, which is brought about by the action of the
many enzymes which are released by the lactic acid bacteria. During (linking word
expressing duration) ripening the protein in cheese is broken down from casein to
low molecular weight peptides and amino acids. Proteolysis is the major – and
certainly the most complex of biochemical events that take place during (linking
word expressing duration) ripening of most cheese varieties and lactic acid bacteria
play an important role in it (back reference word referring back to proteolysis).
This (back reference word which refers back to the phase of proteolysis) happens
while (linking word meaning during the time when something happens) the cheeses
are stored in the curing cabinets and in some cases in caves, usually with
temperature and humidity controlled.
During (linking word signalling duration) coagulation, the initial step of casein
hydrolysis is performed by chymosin (milk coagulant) and proteinases from starter
lactic acid bacteria, starter moulds and other microorganisms. The further
degradation of high molecular weight peptides which are produced at the initial
step, is subsequently (linking word denoting succession) catalised to low
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Scientific Discourse Grammar
molecular weight peptides by endopeptidases from the lactic acid bacteria during
(linking word signalling duration) ripening (see Fig. 4 and 5).
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Scientific Discourse Grammar
Primary proteolysis in cheese is defined as changes in β-, γ-, as-caseinpeptides,
and other minor proteins that are detected by PAGE (Figure 6). Primary proteolysis
leads to the formation of large water-insoluble peptides and smaller water-soluble
peptides (Fox, 1993, Mooney et al., 1998). Secondary proteolysis products include
those peptides, proteins and amino acids (forward reference noun phrase)
which are soluble in the aqueous phase of cheese and are extractable as (linking
word signalling exemplification) the water-soluble nitrogen (WSN) fraction. The
WSN fraction is a complex mixture of large, medium, and small peptides and amino
acids. These components (back reference noun phrase used to refer back to
peptides and amino acids) result from the action of milk clotting enzymes, milk
proteases, starter lactic acid bacteria and contaminating microorganisms (Rank et
al., 1985).
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Scientific Discourse Grammar
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Scientific Discourse Grammar
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Scientific Discourse Grammar
During processing, the pH history of the cheese is a good indicator of the actual
product safety. For example (linking device signalling exemplification) a ‘slow vat’
allows more time at high pH for undesirable bacteria to grow, while (linking word
signalling contrast) during (linking word signalling duration) cheese ripening,
unwanted bacteria may grow due to an acidity neutralization resulting from
secondary microflora growth such as (linking device signalling exemplification)
moulds. For most ripened varieties the combination of a low pH and ripening time,
which leads to moisture decrease in the cheese, will in general (linking device
meaning ‘in most cases’) cause a gradual decline of all groups of bacteria due to
(linking device signalling reason) increasing inhospitable conditions inside the
cheese.
The pH history of a cheese and the hygienic practices which are applied in its
manufacture are thus (linking word signalling result) key factors to guarantee safe
products. Thus, the isolation of autochthonous lactic acid bacteria to be used for
the development of specific starter cultures with improved acid production and
other antimicrobial activities may be an excellent way towards reaching the goals of
simultaneously obtaining safe traditional cheeses, which are still
bearing their
unique flavours.
Nowadays, western consumers still enjoy artisan cheeses thanks to their
outstanding gastronomic qualities; however (linking word signalling contrast), in
most industrialized countries the large-scale cheese processing is the most
important branch of the food industry. In such cases (back reference expression
denoting cases of large-scale cheese production), there is a strong need to
control the fermentation process towards maximum efficiency in terms of yields and
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Scientific Discourse Grammar
standardization of the end product. This (back reference word which refers back to
the “strong need to control…product.), and the need to fulfill the safety assurance
of the final product, is usually achieved by, among other improvements, adding a
high dosage of pure lactic acid bacteria selected starter cultures, which are
commercially available (today’s world starter culture market is more than US $1
billion), as well as (linking device adding information) by heat treating the raw milk,
most commonly by pasteurization.
Notes on the grammar and structure of the 2nd part of the paper
The text type and its logical structure
The writer provides us with more detailed descriptions of preservation methods in the
second part of the paper and he also describes the general process of cheese making in
detail. As it is common with every man-controlled or machine-controlled process, there is
extensive use of the passive present simple tense. I have highlighted the passive
present simple tenses in yellow and I have also underlined them. Active present simple
tenses have only been highlighted in yellow.
Information transfer exercise
Read this part of the paper and expand Figure 2 which depicts the general process of
cheese making to briefly describe each stage of the process. Use mainly the passive
present simple.
Possible answer:
The process of cheese making
Milk treatment: Milk is heated to 73° C. It may be standardized, i.e its fat content may
or (it may be) reduced.
Adding starter culture: Commercially produced starter culture is added to the milk in
industrially produced cheese. Natural starter culture is added to the milk in traditionally
produced cheese.
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Scientific Discourse Grammar
Coagulation: Milk coagulates, that is, it turns from a fluid state to a semi-solid state due
to its chemical transformation with the starter culture.
Cutting the coagulum:The coagulated milk mass, the coagulum, is cut with special
knives in small cubes, called curds.
Cooking the curds: The curds are heated to 37-45° C.
Whey draining: The curds are drained from the whey.
Milling the curds:The curds are milled into tiny pieces in some types of cheese.
Salting/Pressing: Salt is added to the drained curds and then they are pressed in
moulds.
Ripening: Cheese is placed on shelves to ripen for periods ranging from 15 days to a
year or two.
Semantic cohesion and rhetorical cohesion
The writer’s train of thought is conveyed to the reader with appropriate logical markers.
Logical markers, also called “discourse markers” or “rhetorical markers”, do not
have lexical meaning but act as logical signals, that is, they signal the rhetorical intention
of the writer, his train of thought. The ones which appear in the second part of the paper
signal the following rhetorical intentions of the writer:
contrast
addition
alternation
back reference
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Scientific Discourse Grammar
forward reference
duration
exemplification
reason
result
progression
succession
generalisation
I have used bold print for logical markers and I have identified the type of each of them in
brackets in the body of the paper we are analyzing.
Apart from logical cohesion, the text is also characterized by semantic cohesion.
Semantic cohesion is achieved by using appropriate synonyms, antomyms, cover terms
and specific terms which carry lexical meaning within the same discipline register, i.e.
‘starter culture’, ‘lactic acid bacteria’, ‘fermentation’ etc.
You need to master the register of your discipline. A good dictionary of your field
terminology will be of great help. You should also read relevant published papers
extensively, to familiarize yourselves with good examples of scientific discourse in your
field.
Extensive use of visuals to provide data
The writer offers us a wealth of relevant scientific data in visual form with appropriate use
of tables, graphs and diagrams in the second and the third part of the paper. He has also
used several relevant photographs. More specifically, he has used a flow-chart to show
the process of cheese making (Figure 2) and the biochemical changes in cheese making
(Figure 4) in brief. To do the latter in detail, he has used a very sophisticated tree
diagram (Figure 5).
Tables have also been used extensively and also graphs (Figure 7) and bar graphs
(Figures 8 and 9).
The visuals of the article can be used as prompts for information transfer exercises of the
kind you can see below.
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Scientific Discourse Grammar
Information transfer exercise
Transfer the information contained on the bar graphs of Figure 8 (Kongo, 2013) below to
text.
Possible answer:
The bar graphs of Figure 8 illustrate the physicochemical parameters during the ripening
of cheeses which are made with experimental starter cultures.
More specifically, the first bar graph plots the cheese ripening time against its pH. When
curds are set the pH is 5.25. After 15 minutes it drops to 4.9. After the passing of 30
minutes it rises to 5. In one hour it gets to 5.25 and in two hours and a half it gets close to
5.5.
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Scientific Discourse Grammar
The second bar graph plots the cheese ripening time against its moisture. When the
curds are set there is 55% moisture. After 15 minutes the moisture drops to nearly 45%.
After an hour there is a further drop in moisture (35%) and in two hours and a half the
moisture drops to 30%.
The third bar graph plots the cheese ripening time against its salt in moisture. When the
curds are set there is 1.3% salt in moisture. After half an hour there is 3.4% salt in
moisture. In one hour and a half the salt percentage increases to 3.8% and in three hours
it reaches 4.3%.
Let’s move to the 3rd part of the paper now.
After describing and evaluating past and present practices of the cheese making industry
in the first part of his paper, the writer now moves on to review current research trends for
the development of more reliable starter cultures for the production of various cheeses.
I have gradually minimised the identification of verb tenses and discourse markers so
that you may try to work them out on your own.
3. Development of new starter cultures for cheese processing
Traditional raw-milk cheeses are highly valued (passive present simple) for their
flavors, while (linking device signalling contrast) (large-scale products are often
perceived (passive present simple) by the consumer as ‘‘boring’’ (Law, 2001) – a
consequence of the elimination by pasteurization, of the flora that has (present
simple) a key role in flavor development; and this (back reference word) puts
(present simple) the food industry under pressure to look for alternative LAB
cultures capable of improving products flavor (Leroy & De Vuyest, 2004).
Today, the increased understanding of the genomics and metabolomics of food
microbes opens (present simple) up new perspectives for starter-cultures
26
Scientific Discourse Grammar
improvements and through genetic engineering it is (present simple) now possible
to express their desirable properties or suppress undesirable features (Del- cour,
De Vuyst, & Shortt, 1999; Law, 2001; Mogensen, 1993).
[Below the writer refers to how cheese production used to be like in the past. For
this reason he uses the past simple tense. Whenever he wants to emphasise a
process, or to sound impersonal, he uses the passive form of the past simple
tense without the agent.]
Originally, starter cultures for the cheese industry were maintained (passive past
simple) by daily propagation, and later, they (back reference word) became (past
simple) available as frozen concentrates and dried or lyophilised preparations,
produced on an industrial scale, some of them (back reference word) allowing
direct vat inoculation (Sandine, 1996). Because (discourse marker signalling
reason) the original starter cultures were (past simple) mixtures of several
undefined microbes, the daily propagation, eventually (discourse marker signalling
the last stage of a long process) led (past simple) to shifts of the ecosystem
resulting in the disappearance of certain strains. Because some important
metabolic traits in LAB are (present simple) plasmid-encoded, there was (past
simple) a risk that they would be lost during propagation (Weerkamp et al., 1996).
Lactococci are generally used (passive present simple) as starter cultures in the
production of industrial cheeses and cultured milk products. In traditional cheeses
the natural starter cultures may harbor many different species and strains.
On the other hand (discourse marker used to present an opposite or different
idea), cheeses manufactured in a standard (large-scale) processing manner, are
considered (passive present simple) as safer because of the application of
pasteurization and following the standard hygienic practices, including the HACCP.
27
Scientific Discourse Grammar
Traditional cheeses have (present simple) their own specific processing methods,
namely (linking device used to present more information or details about what we
have just mentioned) the common use of raw milk, however (linking device
signalling contrast) the hygienic procedures and HACCP approaches adapted to
their specificities should be applied as well (linking device signalling addition).
Table 3. Main bacteria associated with cheeses or other fermented products (From:
Broome et al., 2003).
As previously stated, LAB are only a part of the complete microflora of raw milk
(Kongo et al, 2007) and this (back reference word), associated to other
28
Scientific Discourse Grammar
technological methods such as (linking device signalling exemplification) pressing,
allows the production of a diversity of traditional cheeses (Parguel, 2011). This rawmilk microflora represents the contamination from the environment (air, utensils, the
animal skin), and the load and its diversity will thus (linking word signalling result)
vary with local, season and livestock type, influenced by temperature.
These microbial mixes have an interdependent activity when together in their
ecosystem and therefore (linking word signalling result)
their physiological
properties may differ when the biodiversity is disrupted. In fact, it has been shown
(passive present perfect used to express the present result of an action which
started in the past in an impersonal manner) that certain microbial associations
reveal a higher protecting effect against pathogens such as (linking device
signalling exemplification) listeria, than when their association diversity is disrupted,
(Montel 2010) see Figure 9.
Low level of L. monocytogenes in cheeses prepared
with consortium associating lactic acid bacteria
(species) and non lactic acid bacteria.
Highest level of L. monocytogenes in
cheeses with S.thermophilus and
without lactic acid bacteria in
the consortium.
Figure 9. Level of L. monocytogenes in the core of Saint-Nectaire type cheese
(28d) (Adapted from Montel & Samelis, (2010).
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Scientific Discourse Grammar
Bacteriocinogenic probiotic bacteria could (simple past of the verb can used to
express possibility) be beneficial when (they are) used as starter cultures in cheese,
as they may prolong the shelf-life of the products, while simultaneously providing
the consumer with a healthy advantage at a low cost (Gomes et al. 1998). The
presence of bacteriocins in foods is, in general, seen as safe for consumers
because bacteriocins are inactivated by pancreatic or gastric enzymes (Liu et al.,
2011)
3.1. EPS-producing cultures and acceleration of cheese ripening
Many LAB produce exopolysaccharides (EPS), which may provide viscosifying,
stabilizing, and water-binding effects in cheeses. The growing demand for allnatural, healthy food products, foods with low fat or sugar content and low levels of
additives, as well as cost factors has increased (present perfect simple to stress
the present result of an action that started in the past) the interest of food industry
to use LAB polysaccharides. Research has also shown (present perfect simple to
stress the present result of an action that started in the past) that EPS+ LAB can
enhance the functional properties of low fat cheese and that the excellent waterbinding properties and moisture retention of EPS can improve the melting
properties of low fat Mozzarella cheese. These properties show that EPS have
wide technical potentials for development of novel and improved food products with
enhanced texture, mouth-feel, taste perception and stability, representing potential
sources for economic gains for the dairy industry.
EPS have also the potential to be used as surface carriers of bacteriocins or
bacteriocin producing LAB, and species such as Leuconostoc mesenteroides,
Streptococcus mutans and several lactobacilli (Lactobacillus brevis, Lactococcus
30
Scientific Discourse Grammar
lactis subsp. lactis, L. lactis subsp. cremoris, Lactobacillus casei, Lb. sake, Lb.
rhamnosus,) and thermophilic (Lb. acidophilus, Lb. delbrueckii subsp. bulgaricus,
Lb.helveticus and S. thermophilus) are known to produce EPS. The isolation and
characterization of EPS from new wild LAB species, which are ubiquitous in
traditional cheeses, is a key strategy towards finding strains with optimized
production of EPS.
Finally, cheese ripening is a lengthy and costly process. Therefore, attenuated
starter cultures with high autolysis are being sought (passive present continuous to
emphasise an action which is under way at this time) towards increasing the
amount of endogenous peptides, thus accelerating the cheese ageing process as
well as enhancing flavour and texture. These cultures may be obtained via
application of several techniques such as pulsed electric field, heat treatment,
freeze–thawing and lysozyme treatment (Briggs, 2003).
Figure 10. Antilisterial activity of LAB isolates from a traditional cheese.
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Scientific Discourse Grammar
Thus, the cheese industry is looking (present continuous to denote an action which
is in progress now and is likely to continue in the near future) for new types of LAB
starter-cultures bearing several properties: – cultures that increase microbial safety
or offer one or more organoleptic, technological, nutritional (enzymes, or
polyunsaturated fatty acids - PUFAs) or health advantages such as probiotic
properties, starter cultures with increased resistance to bacteriophage, (recall that
high product loss, especially in cheese manufacturing, is often associated with
bacteriophages (Parente and Cogan, 2004), cultures that produce EPS and
cultures that accelerate cheese ripening.
3.2. Methods used to characterize LAB for starter cultures development
To characterize new LAB isolates, phenotypic methods relying on physiological or
biochemical criteria have been widely applied (passive present perfect simple to
denote the present results of an action in an impersonal style) (Montel, Talon,
Fournaud, & Champomier, 1991, Kongo et al., 2007). These phenotypic profiling
methods are very important – especially related to finding the technological
features, such as the acidification, proteolytic and lipolytic activity, of a new isolate
(see Tables 3 and 4, and Figure 11) and have the advantage of requiring less
sophisticated equipment. In most of the cases however, these tests are
insufficient for accurate species identification due to the great number of different
LAB species with similar phenotypic characteristics (Temmerman et al. 2004).
32
Scientific Discourse Grammar
Table 4. Phenotypic characteristics for discrimination of common LAB for dairy
processing (modified from Batt, 1995).
Table 5. Enzyme profiling of 14 representative LAB isolates found in Sao Jorge
traditional cheese (from Kongo et al., 2007).
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Scientific Discourse Grammar
Figure 11. Proteolytic acitivity of a Lactobacillus ssp isolate on milk agar.
Molecular biology (genotypic) methods (Figure 12) on the other hand - largely
DNA-based techniques - offer much greater discriminatory power, all the way to
differentiation of individual strains (Aymerich et al., 2006, Cocolin et al., 2004, Furet
et al., 2004, Prabhakar et al., 2011). Thus, a combination of both phenotypic and
genotypic identification techniques (so called polyphasic approach) is preferred
(Temmerman et al., 2004, Aquilanti et al., 2006).
Figure 12. Ribotyping as molecular biology technique for identification of LAB to
type or strain level.(Kongo et al., 2007)
Finally, it should be mentioned that there are concerns today that commensal
bacterial populations from food and the gastrointestinal tract (GIT) of humans and
34
Scientific Discourse Grammar
animals, such as LAB, could act as a reservoir for antibiotic resistance genes, and
therefore, be transferred to possibly pathogenic bacterial species, complicating the
treatment of a disease or infection and leading to the spread of antibiotic-resistant
bacteria (Ammor et al., 2007). Thus, before using new isolates as starter cultures
or as probiotics, the antibiotic resistance must be addressed.
The European Food Safety Agency (EFSA) proposed a system for a pre-market
safety assessment of selected groups of microorganisms, leading to granting a
“Qualified Presumption of Safety (QPS)”. Therefore, EFSA proposed that a safety
assessment of a defined taxonomic group, such as a genus or group of related
species could be made based on establishing identity, body of knowledge, possible
pathogenicity and end use (European Commission 2007). The 33 Lactobacillus
species shown in Table 6 are the ones (back reference words which refer back to
the 33 Lactobacillus species) that in 2007 EFSA stated could be considered to
have QPS-status. In addition to Lactobacillus species, also other LAB species
have been granted QPS –status. They include three leuconostocs, (Ln. citreum, Ln.
lactis and Ln. mesenteroides), three pediococci (P. acidilactici, P. dextrinicus and
P. pentosaceus), Lc. lactis and Streptococcus thermophilus.
Table 6. Lactobacillus (Lb) species with QPS- status according to EFSA (from
Korhonen, 2010).
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Scientific Discourse Grammar
Lactobacilli are generally susceptible to antibiotics inhibiting the synthesis of
proteins, such as chloramphenicol, erythromycin, clindamycin and tetracycline,
and more resistant to aminoglycosides (neomycin, kanamycin, streptomycin and
gentamicin. While (rhetorical marker signalling contrast) some species show a high
level of resistance to glycopeptides (vancomycin and teicoplanin), susceptibility to
bacitracin will vary greatly (Ammor et al, 2007; Coppola et al., 2005).
Table 7. Microbiological break points ( g mL-1) categorizing some LAB species as
resistant (Adapted from Ammor et al., 2007)
Figure 13. Result of a screening for antibiotic resistance of a Lactobacillus
paracasei isolate
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Scientific Discourse Grammar
And now the final part of the paper:
4. Concluding remarks
LAB are important in cheese processing because (i) they increase food safety
through the release of lactic acid and bacteriocins, (ii) produce aromas and flavor
and accelerate the maturation process of cheese via their proteolytic and lipolytic
activities, bringing economic advantages to the industry, (iii) bring about desirable
food textures via release of polysaccharides that increase the viscosity and
firmness, and reduce susceptibility to syneresis, (iv) they may be used to deliver
polyunsaturated fatty acids (PUFA) and vitamins, leading to dairy products with
increased nutritional value, (v) specific probiotic strains contribute to liberation of
health-enhancing bioactive peptides improving absorption in the intestinal tract,
stimulating the immune system, exerting antihypertensive, antithrombotic effects, or
functioning as carriers for minerals.
Novel insights arising from use of Bioinformatics, Systems Biology and
Bioengeneering approaches will offer (future simple tense used for an action which
will occur in the future) perspectives for the application of a new generation of
starter cultures for cheese-making, having enhanced functional features and
offering several health, marketing, and technological advantages, contributing to
the development of small and medium sized enterprises on the one hand, and
product diversification of large companies on the other.
However, there are still many developments to be achieved towards fully realizing
the many foreseen potential of LAB or their products. For example extraction and
37
Scientific Discourse Grammar
purification of bacteriocins is still difficult as they form micelles or clumps with the
nitrogen sources already in the growth medium. On the other hand while genetic
engineering may offer many solutions related to optimal use of LAB, they may not
be easily allowed by food legislation.
Below are the author details:
Author details
J. Marcelino Kongo
Instituto de Inovação Tecnológica dos Açores (INOVA)
Currently at Canadian Research Institute of Food Safety
The referencing system the author has used
The writer follows a version of the APA (American Psychological Association) referencing
system both within the body of his paper and in his reference list. Within the text he has
acknowledged every source of knowledge he has used by citing the author’s surname
and the publication year in brackets. At the end of his work he also provides us with a
detailed bibliographical reference for every work he has cited within his paper. In other
words, for every brief in-text citation he also offers us a corresponding full citation in his
reference list which you can see below.
The writer’s list of references:
5. References
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(2006)161–167.
Ayad, E.H.E., A. Verheul, J.T.M. Wouters & G. Smit, (2002). Antimicrobial-producing wild
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Aymerich, T., Martín, B., Garriga, M., Vidal-Carou, M.C., Bover-Cid, S., & Hugas, M.
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Concluding remarks and acknowledgement
The original work (Kongo, 2013) which I have used as an input text in order to familiarize
you with its grammar and writing conventions is an example of a review of the existing
literature and research in a particular area of scientific inquiry. I hope that my notes have
helped you get to grips with its core linguistic and stylistic aspects.
I would like to express my gratefulness to Marcelino J. Kongo for making his review
available online on an open access basis with a Creative Commons Attribution License.
Reference
Kongo, J.M. (2013). Lactic acid bacteria as starter-cultures for cheese processing: past,
present and future developments. InTech. Retrieved from:
http://dx.doi.org/10.5772/55937
Copyright notice
Τhe copyright of all parts of this work, except the review paper itself (Kongo, 2013),
belongs to the writer:
© Irene Voulgaris (Eιρήνη Βούλγαρη), 2014
This work of mine is published in the form of a file on my blog
http://teacherofesol.wordpress.com on my post of July 19 2014, under the terms of the
Creative Commons Attribution Non-Commercial License
http://creativecommons.org/licenses/by-nc/2.5/. A first, hasty draft of it has been uploaded
on my blog post of Feb 2 2014.
Kongo, J.M. (2013). Lactic acid bacteria as starter-cultures for cheese processing: past, present and
future developments. InTech. Retrieved from http://dx.doi.org/10.5772/55937
i
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