[1] C.M. Bartling, M.E. Hester, J. Bartz, E. Heizer Jr, S.A. Faith, Next

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[1] C.M. Bartling, M.E. Hester, J. Bartz, E. Heizer Jr, S.A. Faith, Next-generation sequencing approach to
epigenetic-based tissue source attribution, Electrophoresis. 35 (2014) 3096-3101.
[2] E.C. Berglund, A. Kiialainen, A.C. Syvanen, Next-generation sequencing technologies and applications
for human genetic history and forensics, Investig.Genet. 2 (2011) 23-2223-2-23.
[3] B.J. Bintz, G.B. Dixon, M.R. Wilson, Simultaneous detection of human mitochondrial DNA and
nuclear-inserted mitochondrial-origin sequences (NumtS) using forensic mtDNA amplification strategies
and pyrosequencing technology, J.Forensic Sci. 59 (2014) 1064-1073.
[4] M. Bodner, A. Iuvaro, C. Strobl, S. Nagl, G. Huber, S. Pelotti, et al., Helena, the hidden beauty:
Resolving the most common West Eurasian mtDNA control region haplotype by massively parallel
sequencing an Italian population sample, Forensic.Sci.Int.Genet. 15 (2015) 21-26.
[5] D.M. Bornman, M.E. Hester, J.M. Schuetter, M.D. Kasoji, A. Minard-Smith, C.A. Barden, et al., Shortread, high-throughput sequencing technology for STR genotyping, Biotech Rapid Dispatches. 2012 (2012)
1-6.
[6] C. Borsting, S.L. Fordyce, J. Olofsson, H.S. Mogensen, N. Morling, Evaluation of the Ion Torrent HID
SNP 169-plex: A SNP typing assay developed for human identification by second generation sequencing,
Forensic.Sci.Int.Genet. 12 (2014) 144-154.
[7] C. Borsting, N. Morling, Next generation sequencing and its applications in forensic genetics,
Forensic.Sci.Int.Genet. (2015).
[8] B. Brenig, J. Beck, E. Schutz, Shotgun metagenomics of biological stains using ultra-deep DNA
sequencing, Forensic.Sci.Int.Genet. 4 (2010) 228-231.
[9] M. Brion, B. Sobrino, M. Martinez, A. Blanco-Verea, A. Carracedo, Massive parallel sequencing
applied to the molecular autopsy in sudden cardiac death in the young, Forensic.Sci.Int.Genet. (2015).
[10] B. Budowle, Molecular genetic investigative leads to differentiate monozygotic twins, Investig.Genet.
5 (2014) 11-2223-5-11. eCollection 2014.
[11] O. Campuzano, C. Allegue, G. Sarquella-Brugada, M. Coll, J. Mates, M. Alcalde, et al., The role of
clinical, genetic and segregation evaluation in sudden infant death, Forensic Sci.Int. 242 (2014) 9-15.
[12] O. Campuzano, O. Sanchez-Molero, C. Allegue, M. Coll, I. Mademont-Soler, E. Selga, et al., Postmortem genetic analysis in juvenile cases of sudden cardiac death, Forensic Sci.Int. 245C (2014) 30-37.
[13] J.D. Churchill, J. Chang, J. Ge, N. Rajagopalan, S.C. Wootton, C.W. Chang, et al., Blind study
evaluation illustrates utility of the Ion PGM system for use in human identity DNA typing, Croat.Med.J. 56
(2015) 218-229.
[14] P. Claes, H. Hill, M.D. Shriver, Toward DNA-based facial composites: preliminary results and
validation, Forensic.Sci.Int.Genet. 13 (2014) 208-216.
[15] S. Dalsgaard, E. Rockenbauer, A. Buchard, H.S. Mogensen, R. Frank-Hansen, C. Borsting, et al., Nonuniform phenotyping of D12S391 resolved by second generation sequencing, Forensic.Sci.Int.Genet. 8
(2014) 195-199.
[16] R. Daniel, C. Santos, C. Phillips, M. Fondevila, R.A. van Oorschot, A. Carracedo, et al., A SNaPshot
of next generation sequencing for forensic SNP analysis, Forensic.Sci.Int.Genet. 14 (2015) 50-60.
[17] C. Davis, D. Peters, D. Warshauer, J. King, B. Budowle, Sequencing the hypervariable regions of
human mitochondrial DNA using massively parallel sequencing: Enhanced data acquisition for DNA
samples encountered in forensic testing, Leg.Med.(Tokyo). 17 (2015) 123-127.
[18] M. Eduardoff, C. Santos, M. de la Puente, T.E. Gross, M. Fondevila, C. Strobl, et al., Inter-laboratory
evaluation of SNP-based forensic identification by massively parallel sequencing using the Ion PGM,
Forensic.Sci.Int.Genet. 17 (2015) 110-121.
[19] S. Elena, A. Alessandro, C. Ignazio, W. Sharon, R. Luigi, B. Andrea, Revealing the challenges of low
template DNA analysis with the prototype Ion AmpliSeq™ Identity panel v2.3 on the PGM™ Sequencer,
Forensic Science International: Genetics.
[20] A. Farrugia, C. Keyser, C. Hollard, J.S. Raul, J. Muller, B. Ludes, Targeted next generation
sequencing application in cardiac channelopathies: Analysis of a cohort of autopsy-negative sudden
unexplained deaths, Forensic Sci.Int. 254 (2015) 5-11.
[21] S.L. Fordyce, H.S. Mogensen, C. Borsting, R.E. Lagace, C.W. Chang, N. Rajagopalan, et al., Secondgeneration sequencing of forensic STRs using the Ion Torrent HID STR 10-plex and the Ion PGM,
Forensic.Sci.Int.Genet. 14 (2015) 132-140.
[22] C. Gelardi, E. Rockenbauer, S. Dalsgaard, C. Borsting, N. Morling, Second generation sequencing of
three STRs D3S1358, D12S391 and D21S11 in Danes and a new nomenclature for sequenced STR alleles,
Forensic.Sci.Int.Genet. 12 (2014) 38-41.
[23] M. Geppert, Q. Ayub, Y. Xue, S. Santos, A. Ribeiro-dos-Santos, M. Baeta, et al., Identification of new
SNPs in native South American populations by resequencing the Y chromosome, Forensic.Sci.Int.Genet.
15 (2015) 111-114.
[24] K.B. Gettings, K.M. Kiesler, P.M. Vallone, Performance of a next generation sequencing SNP assay
on degraded DNA, Forensic.Sci.Int.Genet. 19 (2015) 1-9.
[25] M. Gymrek, Y. Erlich, Profiling short tandem repeats from short reads, Methods Mol.Biol. 1038
(2013) 113-135.
[26] M. Gymrek, D. Golan, S. Rosset, Y. Erlich, lobSTR: A short tandem repeat profiler for personal
genomes, Genome Res. 22 (2012) 1154-1162.
[27] E. Hanson, C. Haas, R. Jucker, J. Ballantyne, Specific and sensitive mRNA biomarkers for the
identification of skin in 'touch DNA' evidence, Forensic.Sci.Int.Genet. 6 (2012) 548-558.
[28] C.L. Hertz, S.L. Christiansen, L. Ferrero-Miliani, S.L. Fordyce, M. Dahl, A.G. Holst, et al., Nextgeneration sequencing of 34 genes in sudden unexplained death victims in forensics and in patients with
channelopathic cardiac diseases, Int.J.Legal Med. (2014).
[29] M.M. Holland, M.R. McQuillan, K.A. O'Hanlon, Second generation sequencing allows for mtDNA
mixture deconvolution and high resolution detection of heteroplasmy, Croat.Med.J. 52 (2011) 299-313.
[30] J. Isaacson, E. Schwoebel, A. Shcherbina, D. Ricke, J. Harper, M. Petrovick, et al., Robust detection of
individual forensic profiles in DNA mixtures, Forensic.Sci.Int.Genet. 14 (2015) 31-37.
[31] R.S. Just, J.A. Irwin, W. Parson, Mitochondrial DNA heteroplasmy in the emerging field of massively
parallel sequencing, Forensic Science International: Genetics.
[32] K.K. Kidd, A.J. Pakstis, W.C. Speed, R. Lagace, J. Chang, S. Wootton, et al., Current sequencing
technology makes microhaplotypes a powerful new type of genetic marker for forensics,
Forensic.Sci.Int.Genet. 12 (2014) 215-224.
[33] K.K. Kidd, W.C. Speed, A.J. Pakstis, M.R. Furtado, R. Fang, A. Madbouly, et al., Progress toward an
efficient panel of SNPs for ancestry inference, Forensic.Sci.Int.Genet. 10 (2014) 23-32.
[34] H. Kim, H.A. Erlich, C.D. Calloway, Analysis of mixtures using next generation sequencing of
mitochondrial DNA hypervariable regions, Croat.Med.J. 56 (2015) 208-217.
[35] J.L. King, B.L. LaRue, N.M. Novroski, M. Stoljarova, S.B. Seo, X. Zeng, et al., High-quality and
high-throughput massively parallel sequencing of the human mitochondrial genome using the Illumina
MiSeq, Forensic.Sci.Int.Genet. 12 (2014) 128-135.
[36] J.L. King, A. Sajantila, B. Budowle, mitoSAVE: mitochondrial sequence analysis of variants in Excel,
Forensic.Sci.Int.Genet. 12 (2014) 122-125.
[37] M.H. Lin, D.F. Jones, R. Fleming, Transcriptomic analysis of degraded forensic body fluids,
Forensic.Sci.Int.Genet. 17 (2015) 35-42.
[38] T. Maricic, M. Whitten, S. Paabo, Multiplexed DNA sequence capture of mitochondrial genomes
using PCR products, PLoS One. 5 (2010) e14004.
[39] J.A. McElhoe, M.M. Holland, K.D. Makova, M.S. Su, I.M. Paul, C.H. Baker, et al., Development and
assessment of an optimized next-generation DNA sequencing approach for the mtgenome using the
Illumina MiSeq, Forensic.Sci.Int.Genet. 13 (2014) 20-29.
[40] M. Mikkelsen, R. Frank-Hansen, A.J. Hansen, N. Morling, Massively parallel pyrosequencing of the
mitochondrial genome with the 454 methodology in forensic genetics, Forensic.Sci.Int.Genet. 12 (2014)
30-37.
[41] W. Parson, G. Huber, L. Moreno, M.B. Madel, M.D. Brandhagen, S. Nagl, et al., Massively parallel
sequencing of complete mitochondrial genomes from hair shaft samples, Forensic.Sci.Int.Genet. 15 (2015)
8-15.
[42] W. Parson, C. Strobl, G. Huber, B. Zimmermann, S.M. Gomes, L. Souto, et al., Reprint of: Evaluation
of next generation mtGenome sequencing using the Ion Torrent Personal Genome Machine (PGM),
Forensic.Sci.Int.Genet. 7 (2013) 632-639.
[43] E. Rockenbauer, S. Hansen, M. Mikkelsen, C. Borsting, N. Morling, Characterization of mutations and
sequence variants in the D21S11 locus by next generation sequencing, Forensic.Sci.Int.Genet. 8 (2014) 6872.
[44] M. Scheible, O. Loreille, R. Just, J. Irwin, Short tandem repeat typing on the 454 platform: strategies
and considerations for targeted sequencing of common forensic markers, Forensic.Sci.Int.Genet. 12 (2014)
107-119.
[45] S.B. Seo, J.L. King, D.H. Warshauer, C.P. Davis, J. Ge, B. Budowle, Single nucleotide polymorphism
typing with massively parallel sequencing for human identification, Int.J.Legal Med. 127 (2013) 10791086.
[46] K. Skonieczna, B. Malyarchuk, A. Jawien, A. Marszalek, Z. Banaszkiewicz, P. Jarmocik, et al.,
Heteroplasmic substitutions in the entire mitochondrial genomes of human colon cells detected by ultradeep 454 sequencing, Forensic.Sci.Int.Genet. 15 (2015) 16-20.
[47] C. Van Neste, Y. Gansemans, D. De Coninck, D. Van Hoofstat, W. Van Criekinge, D. Deforce, et al.,
Forensic massively parallel sequencing data analysis tool: Implementation of MyFLq as a standalone weband Illumina BaseSpace((R))-application, Forensic.Sci.Int.Genet. 15 (2015) 2-7.
[48] C. Van Neste, M. Vandewoestyne, W. Van Criekinge, D. Deforce, F. Van Nieuwerburgh, MyForensic-Loci-queries (MyFLq) framework for analysis of forensic STR data generated by massive parallel
sequencing, Forensic.Sci.Int.Genet. 9 (2014) 1-8.
[49] D.H. Warshauer, C.P. Davis, C. Holt, Y. Han, P. Walichiewicz, T. Richardson, et al., Massively
parallel sequencing of forensically relevant single nucleotide polymorphisms using TruSeq forensic
amplicon, Int.J.Legal Med. 129 (2015) 31-36.
[50] D.H. Warshauer, J.L. King, B. Budowle, STRait Razor v2.0: the improved STR Allele Identification
Tool--Razor, Forensic.Sci.Int.Genet. 14 (2015) 182-186.
[51] D.H. Warshauer, D. Lin, K. Hari, R. Jain, C. Davis, B. Larue, et al., STRait Razor: a length-based
forensic STR allele-calling tool for use with second generation sequencing data, Forensic.Sci.Int.Genet. 7
(2013) 409-417.
[52] J. Weber-Lehmann, E. Schilling, G. Gradl, D.C. Richter, J. Wiehler, B. Rolf, Finding the needle in the
haystack: differentiating "identical" twins in paternity testing and forensics by ultra-deep next generation
sequencing, Forensic.Sci.Int.Genet. 9 (2014) 42-46.
[53] Y. Yang, B. Xie, J. Yan, Application of next-generation sequencing technology in forensic science,
Genomics Proteomics Bioinformatics. 12 (2014) 190-197.
[54] X. Zeng, J.L. King, M. Stoljarova, D.H. Warshauer, B.L. LaRue, A. Sajantila, et al., High sensitivity
multiplex short tandem repeat loci analyses with massively parallel sequencing, Forensic.Sci.Int.Genet. 16
(2015) 38-47.
[55] X. Zeng, J. King, S. Hermanson, J. Patel, D.R. Storts, B. Budowle, An Evaluation of the PowerSeq™
Auto system: A Multiplex Short Tandem Repeat Marker Kit Compatible with Massively Parallel
Sequencing, Forensic Science International: Genetics.
[56] X. Zhao, K. Ma, H. Li, Y. Cao, W. Liu, H. Zhou, et al., Multiplex Y-STRs analysis using the Ion
Torrent Personal Genome Machine (PGM), Forensic Science International: Genetics.
[57] D. Zubakov, I. Kokmeijer, A. Ralf, N. Rajagopalan, L. Calandro, S. Wootton, et al., Towards
simultaneous individual and tissue identification: A proof-of-principle study on parallel sequencing of
STRs, amelogenin, and mRNAs with the Ion Torrent PGM, Forensic.Sci.Int.Genet. 17 (2015) 122-128.
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