MODIFICATIONS BY RHH ON September 18, 2009; changes from 9-7 accepted. 5.4 Application of Water Quality in Environmental Flows Water quality is an important aspect of the development of environmental flow recommendations. However, its application as an overlay to flow regimes identified by the hydrologic analyses is not necessarily straightforward. This section of the Environmental Flows Recommendation Report addresses the application of water quality to environmental flow recommendations for the Sabine and Neches basins. Included are discussions of water quality regulations as they may (or may not) apply to environmental flows, the availability of water quality data in the basins, and the relationship of water quality to flow. This section also provides recommendations for how to apply water quality and flow relationships to the development and management of environmental flows. 5.4.1 REGULATORY PERSPECTIVES IN WATER QUALITY The Clean Water Act (CWA) of 1972 set in motion a regulatory framework that would enable a substantial change in the character of the nations surface waters. The stated goal of the CWA is to “restore and maintain the physical, chemical, and biological integrity of the nation’s waters.” The intervening years since the passage of the CWA have seen significant improvements in surface water quality, primarily through reductions in pollutant discharges from industrial and municipal wastewater treatment facilities. Continued implementation of the goals of the CWA is dependent on the acquisition of a sufficient amount of water quality data in rivers, streams, reservoirs, and estuaries. Water quantity (that is, flow) data are available at each of the 12 gages selected for the Sabine and Neches Basins on, essentially, a daily basis. However, the development of recommendations for environmental flows for these watersheds suffers from a lack of sufficient data to describe water quality conditions in surface waters at all flows. The state’s Clean Rivers Program currently addresses the need for data, collecting water quality samples at numerous stations throughout the state’s watersheds on a quarterly basis under most circumstances. The need for additional water quality data will continue to be addressed through the Clean Rivers Programs. Despite some significant shortcomings now, significant data are available for use in assisting with the initial development of environmental flow recommendations. Linking water quality and environmental flows also requires consideration of water quality regulations, as they are currently applied in the state’s rivers, streams, and estuaries. In Texas, water quality regulations are applied through the Texas Surface Water Quality Standards (TSWQS). In streams and rivers, water quality standards for the protection of aquatic life are based on a minimum flow level known as the “7Q2” flow. The TSWQS defines the 7Q2 flow as the minimum daily flow for a 7-day period with a return period of two years. The application of the 7Q2 flow in the TSWQS is that water quality standards apply to flows at or above the 7Q2. Conversely, water quality standards do not apply at flows below the 7Q2. This is not to say that at lower flows water quality cannot be maintained or should not be considered. However, it is important to not confuse the application of water quality standards via the Texas Surface Water Quality Standards (TSWQS) with development of environmental flows, particularly subsistence flows. In other words, it is not appropriate to use the 7Q2 flow, as published in the TSWQS as some sort of default subsistence flow in the environmental flow regime, and it will not be so used in the Sabine and Neches SB3 recommendations. 5.4.2 AVAILABLE WATER QUALITY DATA Water quality data in the Sabine and Neches Rivers are made available primarily through the state’s Clean Rivers Program. In the Sabine Basin, the Clean Rivers Program is administered by the Sabine River Authority of Texas (SRA-Tx). In the Neches Basin, it is administered by the Lower Neches River Authority (LNVA) in the lower Neches and by the Angelina Neches River Authority (ANRA) in the upper Neches River and in the Angelina River. A variety of water quality parameters are routinely monitored by these programs, including the following:. Dissolved Oxygen Water Temperature pH Alkalinity Total Phosphorus Chlorophyll-a Conductivity (field and laboratory) Total Dissolved Solids Turbidity Fecal Coliform Most, but not all, of these parameters are monitored at each of the 12 selected gages. Data are collected generally on a quarterly basis, although some parameters may be monitored more frequently at some stations. For purposes of this report, we have focused primarily on water quality data available at the selected gages in order to evaluate the relationship between flow and quality. In the case of nutrient data, however, we have expanded beyond the selected gage locations to obtain data at nearby gages in order to capture a sufficient amount of nutrient data to make a more complete evaluation. 5.4.3 FLOW AND QUALITY RELATIONSHIPS Flow and quality relationships in the river basins depend on whether water quality data for a gage location are available for days on which flow data at the gage are collected. Since the gages monitor flow on a continuous basis, the flow-quality relationship can be established if there are a sufficient number of water quality data points collected when the flow gage is operational. Table X1 summarizes the number of water quality data points with corresponding flow values available for each of the 12 selected gages in the basins. For most water quality data, only data collected at the gage location were used. However, in order to develop a sufficient number of quality-flow points for total phosphorus and chlorophyll-a, data from Clean Rivers monitoring locations at and near the flow gages were sometimes utilized. Using these water quality and flow data values, the relationship of each parameter to flow can be evaluated. A graph of flow (on the abscissa) and quality (on the ordinate) was constructed for each parameter in Table X.1. These graphs are contained in Appendix (WQ1). Following is a brief discussion of the observed relationship between the various water quality parameters and flow at the various gages. Dissolved Oxygen Water Temperature pH Alkalinity Total Phosphorus and Chlorophyll-a Conductivity (field and laboratory) and Total Dissolved Solids Turbidity Fecal Coliform TABLE X.1 INSERTED HERE 5.4.4 SELECTION OF WATER QUALITY PARAMETERS FOR E NVIRONMENTAL FLOW RECOMMENDATIONS As Table X.1 indicates, there is a range of potential water quality parameters available for use in developing environmental flows. Although not all of the available water quality data provide information useful to the development of environmental flows, a few stan d out as viable candidates because of their close relationship to maintenance of aquatic life. The SAC document Essential Steps for Biological Overlays in Developing Senate Bill 3 Instream Flow Recommendations (Report # SAC-2009-05, August 31, 2009 version) identifies water temperature, DO, pH, conductivity, and turbidity as parameters that are important to survival, growth, and reproduction of aquatic organisms. This document goes on, however, to focus on water temperature and DO as the primary parameters supporting survival and reproduction of aquatic life. The other parameters may constrain or limit the distribution and abundance of aquatic organisms. Both water temperature and DO are parameters that are readily measured in the field. Hence, there are a significant number of data points available for each of these parameters at the 12 gages. In comparison to most of the water quality data, water temperature and DO have, by far, the greatest number of data points at the widest range of flows. Some consideration has been given to the selection of nutrient or nutrient -related data (i.e., total phosphorus and chlorophyll-a as parameters for consideration in developing environmental flow recommendations. Nutrients in the water column are undoubtedly important factors in the overall health of the stream. However, at this time, there is an insufficient body of data available for these parameters, particularly at base and subsistence flows, to be able to effectively use them at this time. Therefore, based on these factors, water temperature and DO will be considered by the SNBBEST as the primary water quality parameters in development of environmental flow recommendations. This is not to exclude the consideration of pH, conductivity, turbidity, nutrients, or other parameters, if a relationship between flow and the parameter can be readily established in relevant flow ranges. 5.4.5 INTEGRATING WATER QUALITY INTO ENVIRONMENTAL FLOW RECOMMENDATIONS An environmental flow regime covers a wide range of flows from subsistence and base flows on the lower end to high-flow pulses and overbank flows on the upper end. It is possible that water quality issues exist at any or all of the flows. The question is, however, whether there is a critical range to consider with respect to water temperature and DO. If so, can water quality considerations be limited to this critical range? From the graphs contained in Appendix (WQ1), it is evident that the relationship between flow and water quality is generally weak. Water quality in both the Sabine and Neches basins is typically good within the range of flows for which data have been collected. This is true of water temperature and DO as well. Based on the data, DO concentrations throughout the range of flows is good, generally well above water quality standards. Water temperature is more related to season than to flow, and appears to be generally within an acceptable range for supporting aquatic life. However, much of the available water quality data have been collected at flows above what has been identified as the general range of subsistence flows. As flows increase, the availability of data increases, but even the lower end of base flows generally have some data limitations. While it can be established that water quality at medium and upper end of the range is good, extending that trend to lower flows may be risky for some locations. Flow-DO relationships for four gages, for the range of flows considered to be subsistence flows at each gage, are depicted in Figures X.1 through X.4. The flow lines shown on the graphs are defined as follows: Subsistence – The HEFR analyses (FN HEFR memorandum, Table 10) identified seasonal “Subsistence Flows” for various periods of record for each gage. On the graphs, the Subsistence Flow line shown is the highest of the HEFR-derived subsistence flows identified for the full period of record. Summer – The HEFR analyses(FN HEFR memorandum, Table 9) identified “Base Flows” for each season, considering three periods of record (full, pre-reservoir, and post-reservoir) and for dry, average, and wet conditions. On the graphs, the Base Flow identified as “Summer” is for the full period of record in dry conditions. Fall – The Base Flow identified as “Fall” is for the full period of record in dry conditions. Winter – The Base Flow identified as “Winter” is for the full period of record in dry conditions. Spring – The Base Flow identified as “Spring” is for the full period of record in dry conditions. For purposes of integrating water quality into environmental flows recommendations, the Subsistence Flow line in each graph represents the lower boundary of subsistence flows for this gage. Likewise, the Base Flow line shown for each season represents the upper end of subsistence flows (an the lower boundary of base flows). Using this convention, a range of subsistence flows can be defined for each gage, for each season. Each graph also shows the available DO data by season (Summer, Fall, Winter, and Spring). The seasonal DO values can then be viewed in terms of where it falls within the appropriate range of seasonal subsistence flows. The same approach may be taken for flow-temperature relationships at subsistence flows. Figures X.5 through X.8 depict these relationships for the four gages. 5.4.6 EVALUATION OF WATER QUALITY D ATA FOR SUBSISTENCE FLOW RANGES Using Figures X.1 through X.8, it is possible to evaluate DO concentrations and water temperatures at subsistence flows for the four selected gage locations. Sabine River near Beckville The lower bound of subsistence flows in Figure X.1 is indicated as 28 cfs. Sabine River near Ruliff Neches River at Neches Neches River at Evadale