The molecular bases of the tissue culture – tamarillo (Solanum betaceum) as a case study Jorge M. Canhoto & Sandra I. Correia Centre for Functional Ecology, Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, 3000-456 Coimbra, Portugal. jorgecan@ci.uc.pt Plant tissue culture is a set of techniques with a wide range of applications both in plant cloning and plant development analysis. Protocols for cloning thousands of species have been developed using axillary shoot proliferation, organogenesis or somatic embryogenesis. Moreover, tissue culture is of major importance for plant conservation, production of secondary metabolites and plant genetic transformation. In spite of the important achievements made on tissue culture in the last years, the understanding of the molecular events underlying the processes of dedifferentiation and acquisition of totipotency remain largely unclear. It is true that genes directly involved on plant regeneration, mainly on somatic embryogenesis induction, have been found and characterized, such as a SERK and LEC1 among some others. However, this was achieved mainly for a few model species including Arabidopsis and carrot. During the last years we have been working in plant tissue culture of several species, from annuals to trees and from ferns to angiosperms. From these species we have found that tamarillo (Solanum betaceum, syn. Cyphomandra betacea), a tree of the solanaceous family has particular features that make it an interesting system for plant tissue culture and molecular analysis. Tamarillo can be regenerated through axillary shoot proliferation, organogenesis and somatic embryogenesis. Protocols for protoplast isolation and culture have been developed and a method for genetic transformation was also established. Somatic embryogenesis in this species is particularly interesting since embryogenic and non-embryogenic cells can be obtained from the same explant (leaves or zygotic embryos and in the same culture conditions: high sucrose levels and an auxin such as 2,4-D or picloram. On these conditions, embryogenic and non-embryogenic calli can be separated from each other and propagated at will to obtain large amounts of embryogeneic and nonembryogenic cells showing the same genetic background but a different developmental potential. Based on this system proteomic and transcriptomic approaches have been used trying to identify proteins and transcripts related with somatic embryogenesis induction. The results have shown that a putative tRNA/rRNA methyltransferase (NEP-TC 26.5 kDa, GenBank accession number JQ766254) with a high degree of homology with the Arabidopsis thaliana tRNA/rRNA methyltransferase (SpoU) family is mainly expressed on non-embryogenic calluses. NEP-TC is a cytosolic protein mainly expressed around the nucleus of nonembryogenic cells and NEP-TC orthologous in Arabidopsis showed a reduced expression in embryos when compared with leaves or callus. Besides, nonembryogenic samples with high NEP-TC expression levels show enhanced methyltransferase activity. The data so far obtained point to an inhibitory role of NEP-TC on somatic embryogenesis induction contrasting with the promoter effect of other genes already identified on somatic embryo formation.