Supplementary Information NF-κB Expression and Outcomes in Solid Tumors: A Systematic Review and Meta-Analysis Dang Wu, Pin Wu, Lufeng Zhao, Lijian Huang, Zhigang Zhang, Shuai Zhao and Jian Huang * Supplementary data: Figure S1. Subgroup analysis of three-year overall survival (OS) by Nuclear factor-kappaB (NF-κB) expression in different tumor types. Figure S2. Subgroup analysis of Nuclear factor-kappaB (NF-κB) expression in different TNM stages of tumor. Figure S3. Subgroup analysis of three-year overall survival (OS) by cellular localization of Nuclear factor-kappaB (NF-κB) expression. 1 = Nuclear expression; 2 = Cytoplasmic expression. Figure S4. Subgroup analysis of five-year overall survival (OS) by Nuclear factor-kappaB (NF-κB) expression in different tumor types. Figure S5. Subgroup analysis of five-year overall survival (OS) by cellular localization of Nuclear factor-kappaB (NF-κB) expression. 1 = Nuclear expression; 2 = Cytoplasmic expression. Table S1. Evaluation of human NF-kB by immunohistochemistry (IHC) in the selected studies NF-kB Antibody References Country Type of cancer Marker (+)% (Clone) Abdel-Latif, M. Esophageal NF-kB M., et al. USA 60.82% NRd carcinoma p65-N/Ca (2004) Annunziata, C. NF-kB M., et al. Norway Ovarian cancer 58.06% sc-1190 p50-N/C (2010) Head and Neck Balermpas, P., NF-kB Germany Squamous Cell 33.66% ab31481 et al. (2013) p65-Nb Carcinoma Berardi, R., et NF-kB Italy Rectal cancer 47.95% NR al. (2012) p65-N Chu, D., et al. (2011) China Colorectal cancer NF-kB p65-N/C 48.85% ab7970 Darb-Esfahani, S., et al. (2010) Germany Ovarian cancer NF-kB p65-Cc 55.29% sc8008 Method and Cut-off for overexpression NR Positive: IHC >25% tumor cells were positive for NF-kB staining. Positive: IHC ≥5% tumor cells were positive for NF-kB staining. Positive: IHC ≥1% tumor cells were positive for NF-kB staining. IHC, score ≥5. The extensional standards taken were as follows: (i) number of positive stained cell 5%, scored 0; 6%–25%, scored 1; 26%–50%, scored 2; 51%–75%, scored 3; and >75%, scored 4 and (ii) intensity of stain: colorless, scored 0; pallideflavens, scored 1; yellow, scored 2; and brown scored 3. The extensional standards (i) and (ii) weremultiplied and the staining grade was stratified as absent (0 score), weak (1–4 score), moderate (5–8 score), and strong (9–12 score).Tumors with moderate or strong immunostaining were classified as having positive expression. IHC, IRS >4. Total cytoplasmic p65 expression was grouped as followed: “negative”, IRS ≤4; “positive”, IRS >4. Guo, R. X., et al. (2008) Hatata, T., et al. (2012) Huang, C., et al. (2009) Izzo, J. G., et al. (2007) Izzo, J. G.,Correa, A. M., et al. (2006) Izzo, J. G.,Malhotra, U., et al. (2006) Jiang, L. Z., et al. (2011) Jin, X., et al. (2008) Kleinberg, L., et al. (2009) Korkolopoulou , P., et al. (2008) Kwon, H. C., et al. (2010) Kwon, H. C., et al. (2012) Lee, B. L., et al. (2005) Levidou, G., et al. (2007) Esophageal carcinoma Laryngeal squamous cell carcinoma Esophageal carcinoma NF-kB p65-N/C NF-kB p65-N/C NF-kB p65-N/C NF-kB p65-N USA Esophageal carcinoma NF-kB p65-N 58.75% G96-337 Positive: IHC ≥5% tumor cells were positive for NF-kB staining. USA Esophageal carcinoma NF-kB p65-N 48.84% G96-337 Positive: IHC ≥5% tumor cells were positive for NF-kB staining. Laryngeal squamous cell carcinoma Non-small cell lung cancer NF-kB p65-N/C NF-kB p65-N/C NF-kB p65-N/C 64.04% sc502 46.59% sc109 66.18% NR 96.34% sc114 47.30% NR 42.61% NR 17.59% NR 91.40% sc114 China Japan China USA China China Ovarian cancer Norway Ovarian cancer Greece Astrocytomas Korea Colorectal cancer Korea Gastric cancer Korea Gastric cancer Greece Gastric cancer NF-kB p50-N/C NF-kB p65-C NF-kB p65-C NF-kB p65-N NF-kB p50-C 75.00% NR 59.42% sc109 60.26% NR 64.23% G96-337 Positive: IHC >50% tumor cells were positive for NF-kB staining. Positive: IHC ≥10% tumor cells were positive for NF-kB staining. Positive: IHC ≥1% tumor cells were positive for NF-kB staining. Positive: IHC ≥5% tumor cells were positive for NF-kB staining. Positive: IHC ≥10% tumor cells were positive for NF-kB staining. Positive: IHC >5% tumor cells were positive for NF-kB staining. Positive: IHC >25% tumor cells were positive for NF-kB staining. Positive: IHC ≥15% tumor cells were positive for NF-kB staining. Positive: IHC >10% tumor cells were positive for NF-kB staining. Positive: IHC >10% tumor cells were positive for NF-kB staining. Positive: IHC ≥10% tumor cells were positive for NF-kB staining. Positive: IHC ≥10% tumor cells were positive for NF-kB staining. Lewander, A., et al. (2012)-1b Lewander, A., et al. (2012)-2c Li, J., et al. (2009)-M1 Li, J., et al. (2009)-M2 Lin, G., et al. (2012) Nair, V. S., et al. (2014) Nariai, Y., et al. (2011) O'Neil, B. H., et al. (2011) Sweden Colorectal cancer Sweden Colorectal cancer China Cervical cancer China Cervical cancer China Colorectal cancer USA Japan USA Non-small-cell lung cancer Oral squamous cell carcinoma Rectal cancer p-NF-kB p65-N p-NF-kB p65-C NF-kB p65-N NF-kB p50-N NF-kB p65-N/C NF-kB p65-C NF-kB p65-N/C NF-kB p50-N 36.45% NR 64.04% NR 63.29% sc372 82.28% sc114 30.56% NR 57.19% D14E12 52.00% sc8008 92.06% sc114 Okera, M., et al. (2011) USA Prostate cancer NF-kB p65-N/C 52.73% Cat#RB-163 8 Pancione, M., et al. (2009) Italy Colorectal cancer NF-kB p65-N/C 58.33% sc109 Positive: IHC ≥5% tumor cells were positive for NF-kB staining. Positive: IHC ≥5% tumor cells were positive for NF-kB staining. Positive: IHC ≥10% tumor cells were positive for NF-kB staining. Positive: IHC ≥10% tumor cells were positive for NF-kB staining. NR. Positive: IHC >20% tumor cells were positive for NF-kB staining. Positive: IHC >81% tumor cells were positive for NF-kB staining. IHC, >180 units. IHC, score ≥3. A numeric intensity score of 0–3 was assigned to each case (0, no staining; 1+, weak staining; 2+, moderate staining and 3+, strong staining). Staining was also dichotomized into negative and positive. Negative was scored if 0+/1+ and positive was scored if 2+/3+. IHC, score ≥3. The intensity was scored as follows: 1 (weak), 2 (moderate), or 3 (strong). The percentage of positive cells was scored as follows: 0 (0%), 1 (1%-25%), 2 (26%-50%), 3 (51%-75%), or 4 (76%-100%). The 2 scores were combined to obtain the final one: negative (0-2), weakly positive (3-5), or strongly positive (6-7). Park, K. W., et al. (2014) Scartozzi, M., et al. (2007) Sun, W., et al. (2012) Voboril, R., et al. (2008) Korea Gastric cancer Italy Colorectal cancer China Nasopharyngeal carcinoma Czech Republic Rectal cancer NF-kB p65-C NF-kB p65-N/C NF-kB p65-N/C NF-kB p65-C 44.16% NR Positive: IHC >10% tumor cells were positive for NF-kB staining. 60.53% NR NR. 55.45% sc109 NR. 20.00% NR IHC, Presence of NF-kB staining. Weichert, W., et al. (2007)-1 Germany Pancreatic cancer NF-kB p65-N 45.12% sc8008 Weichert, W., et al. (2007)-2 Germany Pancreatic cancer NF-kB p65-C 51.22% sc8008 IHC, IRS ≥7. Intensity of staining was designated as either not existent (0), weak (1), moderate (2) or strong (3). The number of cells stained was scored as either no cells stained (0), less than 10% of cells stained (1), 10– 50% of cells stained (2), 50– 80% of cells stained (3) or more than 80% of cells stained (4). The IRS was calculated by multiplication of these two variables. For statistical analysis, cases were grouped as either negative (IRS 0 –6) or positive (IRS 7 –12). IHC, IRS ≥7. Intensity of staining was designated as either not existent (0), weak (1), moderate (2) or strong (3). The number of cells stained was scored as either no cells stained (0), less than 10% of cells stained (1), 10– 50% of cells stained (2), 50– 80% of cells stained (3) or more than 80% of cells stained (4). The IRS was calculated by multiplication of these two variables. For statistical analysis, cases were grouped Wu, W., et al. (2008) Wu, Z., et al. (2013) Yamanaka, N., et al. (2004) Yang, G., et al. (2011) Yeh, H. C., et al. (2010) Yoon, S. O., et al. (2009) Voboril, R., et al. (2008) Zhang, D., et al. (2007) China Gallbladder carcinoma China Cervical cancer Japan Gastric cancer USA Ovarian cancer NF-kB p65-N/C NF-kB p65-N/C NF-kB p65-N NF-kB p65-N 57.89% NR 72.50% NR 33.33% sc109 80.56% NR as either negative (IRS 0 –6) or positive (IRS 7 –12). Positive: IHC >10% tumor cells were positive for NF-kB staining. Positive: IHC ≥10% tumor cells were positive for NF-kB staining. Positive: IHC >25% tumor cells were positive for NF-kB staining. NR. IHC, score ≥5. The intensity of cytoplasmic staining was graded by a score of 1 point (weak), 2 points (moderate), and 3 points intense). The percentage of stained cells was rated as 1 point (≤10%), 2 points (11–50%), and 3 points (>50%). Cases with a sum of ntensity points and percentage points of ≥5 were defined as having an overexpression of NF-κB. Positive: IHC >10% tumor cells were positive for NF-kB staining. China Urothelial carcinoma NF-kB p65-N 26.67% sc109 Korea Mucinous adenocarcinoma NF-kB-N 40.00% NR Czech Republic Rectal cancer 21.74% NR NR China Non-small cell lung cancer 48.28% NR Positive: IHC >5% tumor cells were positive for NF-kB staining. NF-kB p65-C NF-kB p65-N/C Zhang, J., et al. (2005) China Adenoid Cystic Carcinoma of Salivary Glands NF-kB p65-N Zhang, Y., et al. China (2011) Nasopharyngeal carcinoma NF-kB p65-N Zhang, Z., et al. China (2006) Zhou, Q., et al. China Non-small cell lung cancer Intrahepatic NF-kB p50-N/C NF-kB-N/ 35.00% NR 64.29% NR 66.67% NR 51.52% NR IHC, score ≥4. The intensity of staining was on the following scale: 0, no staining; 1+, mild staining; 2+, moderate staining; 3+, intense staining. The area of staining was evaluated as follows: 0, no staining of cells in any microscopic fields; 1+, <25% of tissue stained positive; 2+, between 25% and 50% stained positive; 3+, between 50% and 75% stained positive; 4+, >75% stained positive. The minimum score when summed (extension + intensity) was therefore 0 and the maximum, 7. The combined staining score (extension + intensity) V3 was considered as negative staining (low staining); a score between 4 and 5 was considered as moderate staining; between 6 and 7 was strong staining. IHC, score ≥4. The score is the sum of the percentage of positive cells (1, less than 25% positive cells; 2, 26 to 50% positive cells; and 3, more than 50% positive cells) and the staining intensity (0, negative; 1, weak; 2, moderate; 3, strong). Sums between 0 and 3 were scored as negative; sums from 4 to 6 were scored as positive. Positive: IHC ≥10% tumor cells were positive for NF-kB staining. IHC, score ≥3. First, the intensities of (2013) Cholangiocarcinoma C staining were indicated as follows: 0, no staining; 1, light yellow; 2, brownish yellow; 3, reddish brown. Second, relative numbers of positive cells were marked as follows: 0, no positive cells; 1, positive cells ≤ 10%; 2, positive cells 11–50%; 3, positive cells 51–75%; 4, positive cells >75%. Finally, all sections were divided into four grades by the product of intensity scores and percentage scores described above: –, 0–2 points; +, 3–4 points; 2+, 6–8 points; 3+, 9–12 points; ≥ 3 points defined as positive. a. N/C: Nuclear or cytoplasmic expression; b. N,1: Nuclear expression; c. C,2: Cytoplasmic expression; d. NR: No report.