Electronic Supplementary Materials Table S1: Life history parameters for anemonefish in the Amphiprion akallopisos/perideraion/sandaracinos species complex used to estimate ages of our sampled skunk anemonefish TL at sexual maturity (mm) A. akallopisos 721, 45-77 (males)2, 78-105 (females)2 A. perideraion 47 (males)5, 54 (females)5, 541 A. sandaracinos 511 Age at sexual maturity (yr) Max TL (mm) Age at TL (yr) 1053, 1104 1.75-1.83 (both sexes)5 1003, 1006 10.77 1406 1 (Allsop and West 2003); 2 Aldabra islands in the Indian Ocean (Fricke 1979); 3East Indies: (Allen and Erdmann 2012); 4(Fautin and Allen 1992); 5Eniwetok Atoll: (Allen 1975); 6IndoPacific & Caribbean including the Red Sea: (Lieske and Myers 1994); 7Calculated from growth data for a dominant pair (Allen 1975). We wished to age the A. akallopisos sampled and measured, but age at length has not been determined for A. akallopisos, only for closely related anemonefish species, such as the pink skunk anemonefish, A. perideraion (Timm et al. 2008). Sizes at sexual maturity and maximum length are comparable for these two species (Table S1), thus we assumed that life history parameters of A. perideraion would be very similar to A. akallopisos. Using a complete growth record of a dominant pair from recruitment to a TL of 54 and 70 mm and the mean growth rates of 0.4, 0.7 and 0.3 mm per month for the three largest size classes of A. perideraion (50.0-59.9; 60.0-69.9; 70.0-79.9mm) (Allen 1975), we estimated that a maximum length of 100mm corresponds to an age of approximately 10.7-13.3 years old (Table S1). We do not know whether the individual A. akallopisos we sampled had obtained their maximum size, therefore we propose a conservative estimate of maximum age at eight years for the largest A. akallopisos that we sampled (112 mm). We therefore conservatively examined thermal stressor events over the last eight years from 2003-2010. References Allen GR (1975) The Anemonefishes: their classification and biology. Second edition. Tropical fish hobbyist publications, Hong Kong Allen GR, Erdmann MV (2012) Reef fishes of the East Indies. University of Hawai'i Press, Perth, Australia Allsop DJ, West SA (2003) Constant relative age and size at sex change for sequentially hermaphroditic fish. J Evol Biol 16:921-929 Fautin D, Allen G (1992) Field guide to anemonefishes and their host sea anemones, Francis Street, Perth: Western Australia Museum Fricke HW (1979) Mating system, resource defence and sex change in the anemonefish Amphiprion akallopisos. Zeitschrift für Tierpsychologie 50:313-326 Lieske E, Myers R (1994) Collins Pockets Guide. Coral reef fishes. Indo-Pacific & Caribbean including the Red Sea. Harper Collins Publishers Timm J, Figiel M, Kochzius M (2008) Contrasting patterns in species boundaries and evolution of anemonefishes (Amphiprioninae, Pomacentridae) in the centre of marine biodiversity. Mol Phylogenet Evol 49:268-276 Table S2: Individual size of each Amphiprion akallopisos sampled, their estimated hatch date after estimating their age from growth rates for A. perideraion (Allen 1975), the summer during which the thermal event occurred at each site. When the thermal event preceded hatch date, the year during which the greatest maximum summer sea surface temperature and when the individuals were alive is given. Site Individual sizes (mm) Estimated hatch date Year of New thermal (of smallest if >1) thermal event event year IG1 84, 88, 100 March 2002 2010 IG2 48, 62, 87, 89, 107, 112 July 2009 2010 JDN1 50, 62, 70, 78, 79, 83 June 2009 2010 JDN2 55, 84 June 2008 2009 JDN3 57, 75, 80, 93 January 2008 2010 JDN4 65 September 2006 2005 2010 JDN4 66 August 2006 2005 2010 JDN4 70 January 2006 2005 2010 JDN4 86, 98 February 2000 2005 EUR1 68, 82, 86, 90, 103 January 2006 2010 EUR2 73 March 2005 2004 2009 EUR2 76 June 2004 2004 2009 In order to verify that each of our individuals experienced the thermal stressors at each site, we estimated their ages based on growth rates for A. perideraion (Allen 1975) and their estimated hatch date is given in Table S2. If they hatched after the thermal event between 2003-2010 for each site (shown in Table S2), the year during which the maximum summer SST occurred that they would have experienced was used (shown in Table S2). The new maximum summer SST was then used in the final models. References Allen GR (1975) The Anemonefishes: their classification and biology. Second edition. Tropical fish hobbyist publications, Hong Kong Table S3: Density of anemonefish predators, anemonefish egg predators and anemone predators present in the Îles Eparses that may cause a stress response in anemonefish, Amphiprion akallopisos. A list was drawn up from Fricke (1975) and Moyer (1980) and other species within the families were included based on their known diet. We visually censused three 50x5m belt-transects (250-m2) distributed on either side of three replicate 20-m Line Intersect Transects to record fish species density (juveniles and adults)(Chabanet et al. 2002). EUR1 EUR2 Balistapus undulatus 0.7 0.7 Caranx ignobilis & C. melampygus 7.3 0.7 IG1 IG2 JDN1 JDN2 JDN3 JDN4 Balistidae 0.3 Carangidae 6.3 23.3 1.0 1.0 Elagatis bipinnulata 0.7 1.0 Chaetodontidae Chaetodon auriga & C. lunula 4.0 1.3 4.0 1.3 0.7 3.0 5.3 Fistulariidae 2.0 1.0 Fistularia commersoni 0.3 1.0 Labridae Bodianus axillaris 1.0 0.3 1.0 0.3 Cheilinus trilobatus 0.3 0.3 Epibulus insidiator 0.7 0.7 0.3 7.0 0.3 0.3 Thalassoma ballieui, T. hardwicke & T. lunare 3.7 4.3 1.3 3.3 Lethrinidae Gnathodentex aureolineatus Lethrinus harak 10.7 2.3 0.3 Lutjanidae Aphareus furcatus & A. rutilans 1.0 0.3 Aprion virescens 1.0 0.3 0.3 Lutjanus bohar, L. fulvus, L. gibbus, kasmira, L. monostigma & L. rivulatus 4.7 6.7 2.0 4.3 2.7 Macolor niger 0.7 0.3 0.7 Parupeneus cyclostomus 0.3 1.0 0.7 14.0 3.3 Mullidae 0.7 Pomacentridae Amblyglyphidodon leucogaster Dascyllus trimaculatus 0.3 0.7 10.0 6.7 lacrymatus 3.0 4.0 2.0 Aethaloperca 1.0 1.3 1.0 Cephalopholis 9.3 7.7 11.0 Epinephelus 4.0 1.3 5.3 Plectroglyphidodon dickii & P. 6.3 5.3 8.7 1.7 0.3 0.7 0.3 0.3 1.7 3.7 3.7 5.0 1.0 0.3 Serranidae Plectropomus Variola Total density per site 0.3 2.3 0.7 1.3 42.0 29.7 1.7 56.3 39.7 1.0 19.3 28.0 0.7 33.0 References Chabanet P, Bigot L, Naim O, Garnier R, Moyne-Picard M (2002) Coral reef monitoring at Reunion Island (Western Indian Ocean). Proc 9th Int Coral Reef Symp 2:873878 Fricke HW (1975) Selektives feinderkennen bei dem anemonenfisch Amphiprion bicinctus (Rüppell). J Exp Mar Biol Ecol 19:1-7 Moyer JT (1980) Influence of temperate waters on the behavior of the tropical anemonefish Amphiprion clarkii at Miyake-Jima, Japan. Bull Mar Sci 30:261-277 18.3 APPENDIX 1: Validation of cortisol kit for Amphiprion akallopisos Blood samples were taken from thirty-six skunk anemonefish, Amphiprion akallopisos, laterally from the caudal vein using heparinised (Sigma H-0878) plastic 1 ml syringes fitted with a 30 gauge needle and kept on ice until processing (Godwin and Thomas 1993; Mills et al. 2010). Half of the specimens (15 in total) were immediately released back on their host anemone, whereas the other half (21 in total) were taken aboard the Marion Dufresne and kept in aquaria. Individual blood samples were transferred to 75 µl haematocrit capillaries and centrifuged (Beckman Coulter TJ-25 Centrifuge) at 10,000g for 5 minutes. The supernatant, a yellow plasma layer, was collected without disturbing the white buffy layer or the blood cells. Individual plasma samples, as well as a pool of approximately twenty samples, were stored at -80 ºC for one month, transported back to France and kept at -80 °C for three months when the hormone measurements were made. Morphological sex identification The 21 specimens in aquaria were anesthetized, frozen at -80 °C for one month, transported back to France and kept at -80 °C until dissection after a further month. Gonads were removed and sex was determined morphometrically by two observers blind to their group size and structure. Hormone measurements Plasma cortisol was measured using an EIA kit (Cortisol EIA Kit, No. 500360, Cayman Chemicals, SPI BIO, France) as described in Mills et al. (2010). 50 µl of the 8 standards or 50 µl of the blood plasma samples were added with 50 µl of cortisol- acetylcholinesterase (AChE) conjugate and 50 µl of cortisol-specific rabbit antiserum to a 96-well plate. During 18 hours at 4°C, cortisol AChE and sample or standard cortisol competed for a limited number of cortisol-specific rabbit antiserum binding sites whose complex attached to the mouse monoclonal anti-rabbit IgG antibody previously attached to the well. The plate was washed five times to remove any unbound reagents and 200 µl of Ellman’s reagent, that contains the substrate to AChE, was added to the wells. The plate was placed on an orbital shaker in the dark for 80 mins. The intensity of the yellow colour was measured spectrophotometrically (Beckman Coulter AD 340 Spectrophotometer) at 405nm and is proportional to the amount of cortisol AChE bound to the well, which is inversely proportional to the amount of free cortisol present. Sample cortisol concentrations were determined by interpolation from the standards calibration curve using a common functional model for calibration curves. The data were plotted as % maximum bound (% B/Bo) versus log concentration using a logitlog curve fit as recommended for this kits (www.caymanchem.com/analysis/eia). Validation comprised: 1) parallel displacement of serially diluted plasma to the standard curve; 2) precision from intra- and inter-assay variabilities. 1) Parallelism was evaluated by measuring cortisol concentrations in pooled plasma samples, serially diluted in EIA buffer provided with the kits. The dilution ratios were: 1:19, 1:34, 1:60, 1:108, 1:182, 1:323, 1:561, and 1:989. The maximum bound (% B/Bo) for each sample dilution and for the standards were plotted against their relative log dilution and the shapes of the resulting curves were compared. These curves must be parallel to support the assumption that the antibody-binding characteristics of standard and sample are similar enough to allow the determination of antibody levels in the diluted plasma sample. An ANCOVA was carried out to determine the homogeneity of slopes between the sample dilutions and those of the kit’s standards. In addition, regression analysis of the diluted sample was used to determine the dilution factor that corresponds to 50 % of antibody bound. 2) Precision was assessed by examining intra- and inter-assay variability of samples with different hormones levels. Intra-assay variability was determined by evaluating 49 plasma samples in duplicate within the same run of the assay. Inter-assay variability was determined by evaluating nine samples in quadruplicate across two runs of the assay. Variabilities or coefficients of variation (CV) of repeated measures of samples were assessed. CV was calculated according to the formula: CV = (SD X -1) x 100. A kit was considered to have good precision if the CV was < 20% as per the guidelines in Plikaytis et al. (1994) and Sukovaty et al. (2006). RESULTS Pooled plasma of field skunk anemonefish, A. akallopisos was screened for parallelism with six dilutions of the cortisol kit’s standards and were found to run parallel to the cortisol standard curve (Table AI; Fig. A1). Regression analysis enabled the appropriate dilution factor for 50 % of antibody bound for the skunk anemonefish to be determined with the cortisol kit (Table AI). A. akallopisos also showed high accuracy and precision with the cortisol kit determined from intra- and inter-assay variabilities respectively; 13.3% (n = 49) and 16.9% (n = 7). Cortisol concentrations of field skunk anemonefish, A. akallopisos, based on the mean (± SE) of the pooled plasma from 36 individuals was 54.14 ± 4.26 ngml-1. This mean is comparable to cortisol levels previously recorded for the fire clownfish A. melanopus (Bleeker, 1852) (mean plasma cortisol values: males = 17 ± 4 ngml-1 and females = 16 ± 3 ngml-1; (Godwin and Thomas 1993; Buston et al. 2004) and for aquarium and field A. percula and A. chrysopterus: 18.98 ± 1.59 ngml-1; and 21.53 ± 2.46 ngml-1 respectively (Mills et al. 2010). In conclusion, cortisol EIA assay kit was tested for use on A. akallopisos and the dose-response curve was parallel to the cortisol EIA assay kit standards (Fig. A1; Table AI) and high precision was obtained from intra-and inter-assay variabilities (< 20%) with A. akallopisos. Consequently, this kit can be confidently used for measuring cortisol in A. akallopisos. Table AI. ANCOVA on homogeneity of slopes for sample dilution versus standard dilution curves for cortisol kits in Amphiprion akallopisos. The dilution factor (dilution) for 50 % of antibody bound determined from regression analyses is also given. Assay Species df Mean square F p Dilution factor Cortisol A. akallopsisos 1,27 0.003 0.340 0.565 1:335 (0.003) df, degrees of freedom; F, test statistic: p, probability. Figure A1. Dose-response curve for cortisol obtained using 6 kit standards and pooled plasma from Amphiprion akallopisos (kit standards: y = -40.50 x - 66.81, R2 = 0.97, N = 12, p < 0.001; samples: y = -39.21 x - 49.03, R2 = 0.98, N = 16, p < 0.001). Dashed line and arrow represents 50 % bound (see Table I for corresponding dilution factors). = Pooled sample plasma; = Cortisol kit standards. 100 % B/Bo 80 60 40 20 0 -5.0 -4.0 -3.0 -2.0 -1.0 0.0 Relative log dilutions (%) References Buston PM, Munday PL, Warner RR (2004) Sex change and relative body size in animals. Nature 428 Godwin JR, Thomas P (1993) Sex change and steroid profiles in the protandrous anemonefish Amphiprion melanopus (Pomacentridae, Teleostei). General and Comparative Endocrinology 91:144-157 Mills SC, Mourier J, Galzin R (2010) Plasma cortisol and 11-ketotestosterone enzyme immunoassay (EIA) kit validation for three fish species: the orange clownfish Amphiprion percula, the orangefin anemonefish Amphiprion chrysopterus and the blacktip reef shark Carcharhinus melanopterus. Journal of Fish Biology 77:769777 Plikaytis BD, Holder PF, Pais LB, Maslanka SE, Gheesling LL, Carlone GM (1994) Determination of parallelism and nonparallelism in bioassay dilution curves. Journal of Clinical Microbiology 32:2441-2447 Sukovaty RL, Lee JW, Fox J, Toney K, Papac DI, Grover TA, Wells DS (2006) Quantification of recombinant human parathyroid hormone (rhPTH(1-84)) in human plasma by immunoassay: Commercial kit evaluation and validation to support pharmacokinetic studies. Journal of Pharmaceutical and Biomedical Analysis 42:261-271