Hardy-Weinberg Lab Background: In 1908, two scientists, Godfrey H. Hardy, an English mathematician, and Wilhelm Weinberg, a German physician, independently worked out a mathematical relationship that related genotypes to allele frequencies. Godfrey H. Hardy Wilhelm Weinberg Their mathematical concept, called the Hardy-Weinberg principle, is a crucial concept in population genetics. It predicts how gene frequencies will be inherited from generation to generation given a specific set of assumptions. The Hardy-Weinberg principle states that in a large randomly breeding population, allelic frequencies will remain the same from generation to generation assuming that there is no mutation, gene migration, selection or genetic drift. This principle is important because it gives biologists a standard from which to measure changes in allele frequency in a population. The Hardy-Weinberg principle can be illustrated mathematically with the equation: p2+2pq+q2 = 1 p+q=1 Where ‘p’ and ‘q’ represent the frequencies of alleles. It is important to note that p added to q always equals one (100%). To illustrate how the Hardy-Weinberg principle works, let us consider the MN blood group. Humans inherit either the M or the N antigen, which is determined by two different alleles at the same gene locus. If we let the frequency of allele M equal “p” (p = M) and the frequency of the other allele N equal “q” (q = N), then the next generation's genotypes will occur as follows: Frequency of MM genotype = p2 Frequency of MN genotype = 2pq Frequency of NN genotype = q2 Remember: Each offspring gets one allele from mom and one from dad! We can take a sample of the population and count the number of people with each genotype. For example, a sample of 5000 from Forensic Town, USA, has: 1460 individuals of type MM, that is 1460/5000 or 29.2% 2550 of type MN, that is 2550/5000 or 51% 990 of type NN, that is 990/5000 or 19.8% Remember: allele frequency = # of specific allele/# of total alleles If we apply the Hardy-Weinberg equation (p2 + 2pq + q2 = 1) we can calculate the allele frequencies as: Frequency of M = p2 + 0.5 (2pq) = 0.292 + (0.5 x 0.51) = 0.547 Frequency of N = q = 1 - p = 1 - 0.547 = 0.453 We can now calculate our expected genotype frequencies: MM = p2 = 0.5472 = 0.299, or 1496 individuals in the sample MN = 2pq = 2 x 0.547 x 0.453 = 0.496, or 2478 individuals NN = q2 = 0.4532 = 0.205, or 1026 individuals Our expected genotype frequencies are not identical to our actual sample from Forensic Town, USA suggesting this population is evolving. Source: National Forensic Science Technology Center (www.nfstc.org) Procedure: Assume you are dealing with a single gene that has two allele alternatives, A and a. “A” is dominant over “a”. Red suits (diamonds and hearts) represent “A”. Black suits (clubs and spades) represent “a”. Jokers, since they are printed in black ink, will also represent “a”. To begin each simulation, each student must have one red-suited and one black-suited card. This represents the heterozygous (Aa) genotype. When mating, pass one of your cards face down to your partner. They will give you one of their cards in return. NO peeking at your cards until told to do so. Unlike real human mating (hopefully!), all mating will be random. This means if someone asks you, you have to mate with him or her. Same sex, opposite sex…it doesn’t matter. Simulation 1: Begin by counting the number of students in the class. Count the number of each genotype (AA, Aa, or aa) in the class and then calculate the frequency of alleles, A and a. Record this information in your Data Table. Each member will mate (exchange a card) with another member of the class. After the exchange, each student will now represent the newest generation and will be ready to mate with another member of the class. You must mate with a different person each time, and you must mate five times. No peeking at your cards in-between romantic encounters! After everyone in the class has mated five times, count the number of each genotype (AA, Aa, aa) in the class and calculate the frequency of the alleles, A and a. Record this information in your Data Table. AA = red & red Aa = red & black aa = black & black Simulation 2: Everyone begins as a heterozygote again. Count the number of different genotypes and the frequency of the alleles, A and a. Record this information in your Data Table. Now mate as you did before, however, you will look at your cards after the first mating. If you inherited the “aa” genotype, then you die and must sit down. Everyone that is still living will mate four more times. No peeking in-between these encounters. Before calculating the allele frequencies of A and a, hypothesize what will happen to these values because the “aa” individuals died after the first mating. Will they be similar to Simulation 1 or different? Why? The genotypes of the survivors and the frequency of the alleles, A and a, should be determined. Record this information in your Data Table. Simulation 3: Everyone begins as a heterozygote again. Count the number of different genotypes and the frequency of the alleles, A and a. Record this information in your Data Table. Now mate as you did in Simulation 1. No peeking at your cards in-between romantic encounters! At the end of five matings, sit down and your teacher will tell you if you survive or not. You see, you may have been in the wrong place at the wrong time and chance alone (we call this genetic drift) determined that you did not survive. The remaining students survive. Before calculating the allele frequencies of A and a, hypothesize what will happen to these values because genetic drift (chance). Will the allele frequencies change or stay the same? Why? Count the different genotypes of the survivors and calculate the frequency of the alleles, A and a. Record this information in your Data Table. Names: ____________________________________________________ Date: ________________________ Period: _________ Hardy-Weinberg Lab Background: 1. What does the Hardy-Weinberg Principle state? _____________________________________________________ _______________________________________________________________________________________________________________ _______________________________________________________________________________________________________________ 2. What is the Hardy-Weinberg equation? What does each variable represent? _____________________ _______________________________________________________________________________________________________________ _______________________________________________________________________________________________________________ _______________________________________________________________________________________________________________ Data Table: Simulation 1 Simulation 2 Simulation 3 Beginning # of AA Beginning # of Aa Beginning # of aa Total # of alleles Beginning frequency of A Beginning frequency of a Ending # of AA Ending # of Aa Ending # of aa Total # of surviving alleles Ending frequency of A Ending frequency of a Beginning # of AA Beginning # of Aa Beginning # of aa Total # of alleles Beginning frequency of A Beginning frequency of a Ending # of AA Ending # of Aa Ending # of aa Total # of surviving alleles Ending frequency of A Ending frequency of a Beginning # of AA Beginning # of Aa Beginning # of aa Total # of alleles Beginning frequency of A Beginning frequency of a Ending # of AA Ending # of Aa Ending # of aa Total # of surviving alleles Ending frequency of A Ending frequency of a Simulation 2 Prediction: ______________________________________________________________________________________ _______________________________________________________________________________________________________________ _______________________________________________________________________________________________________________ Simulation 3 Prediction: ______________________________________________________________________________________ _______________________________________________________________________________________________________________ _______________________________________________________________________________________________________________ Analysis & Conclusions 1. Explain why the allele frequencies in Simulation 1 did not change although the number of different phenotypes did change. ______________________________________________________________________ _______________________________________________________________________________________________________________ _______________________________________________________________________________________________________________ _______________________________________________________________________________________________________________ 2. Why did the frequency of the alleles change in Simulation 2? _______________________________________ _______________________________________________________________________________________________________________ _______________________________________________________________________________________________________________ 3. In Simulation 3, the allele frequencies should have hanged due to the random event that removed a portion of the population. a. How was Simulation 3 different from Simulation 2? _________________________________________ _______________________________________________________________________________________________________________ _______________________________________________________________________________________________________________ b. If the class size had been 1,000 instead of our actual class size (which is much smaller than 1,000), and the same number of students were randomly removed, do you think the change in allele frequency would have been as different as the change your class experienced? Explain your reasoning. _________________________________________________________ _______________________________________________________________________________________________________________ _______________________________________________________________________________________________________________ _______________________________________________________________________________________________________________ 4. Other than population size, what four factors might interfere with the H-W principle? _______________________________________________________________________________________________________________ _______________________________________________________________________________________________________________ 5. If you know that a population is 75% the dominant phenotype (p2 + 2pq) and 25% is the recessive phenotype (q2), can you determine approximately how many of the dominant phenotype are homozygous dominant (p2) and how many are heterozygous dominant (2pq)? Show your math. Hardy-Weinberg Lab Extra Credit – MUST SHOW ALL YOUR WORK TO EARN CREDIT 1. Tall is dominant over short in pea plants. In a population of pea plants, 60 were tall (T) and 40 were short (t). (3 points) a. What is the frequency (%) of short plants in the population? b. Using your answer to part a, calculate the frequency of the short gene. c. What is the frequency of the tall gene? 2. If all of the pea plants in question 1 reproduce and the next generation is 200 plants, who many of those plants will be: (3 points) a. Homozygous dominant: b. Heterozygous: c. Homozygous recessive: 3. If all the short (homozygous recessive) plants in question 2 die, what will be the new frequency of the: (two points) a. tall allele: b. short allele: 4. If the short plants continue to die generation after generation, will the frequency of t ever reach zero? Defend your answer. (2 points)