Aoki N, et al. p. 1 Title: Hippocampal sclerosis in Lewy body disease is a TDP-43 proteinopathy similar to FTLDTDP Type A Authors and Affiliations Naoya Aoki, MD1, Melissa E. Murray, PhD1, Kotaro Ogaki, MD, PhD1, Shinsuke Fujioka, MD1,2, Nicola J. Rutherford1,3, Rosa Rademakers, PhD1, Owen A. Ross, PhD1, and Dennis W. Dickson, MD1 1 Department of Neuroscience, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL 32224 2 Department of Neurology, Fukuoka University, Fukuoka, Japan 3 Department of Neuroscience, Center for Translational Research in Neurodegenerative Disease, McKnight Brain Institute, University of Florida, 1275 Center Drive, Gainesville, FL 32610-0244 Aoki N, et al. p. 2 Supplemental Material Supplemental Methods To identify a validation cohort, we used the same exclusion criteria as stated for the LBD cohort in the Case Material section. Additionally, we excluded for LBD, HpScl, and severe Alzheimer’s disease pathology by limiting our cohort to Braak NFT stage ≤III (n=132). A section of the hippocampus was screened with TDP-43 immunohistochemistry (MC2085) in all cases. TDP-43 subtype and severity of CA1 fine neurites were assessed on sections that were immunostained with phosphorylated TDP-43 antibody (pS409/410) as stated for the LBD cohort in the Case Material section. Supplemental Figure legend Histologic features of “pre-HpScl” in a patient from the non- LBD cohort. The hippocampus has no neuronal loss in the CA1 sector (a), but abundant TDP43-positive fine neurites (b). Neuronal cytoplasmic inclusions (NCIs) in the dentate fascia (c). Mixture of NCIs and dystrophic neurites in the occipitotemporal gyrus (d). H&E staining (a). TDP-43 pS409/410 (b-d). Scale bars: a-d; 50um. Rev1; Resp3 Supplemental Table 1 legend All data are displayed as median (25th, 75th range), unless otherwise noted. TMEM106B rs1990622 C allele, GRN rs5848 T allele, and APOE ε4 allele carriers are displayed as number genotyped out of available cases. Supplemental Table 2 legend otherwise noted. All data is displayed as median (25th, 75th range), unless Aoki N, et al. p. 3 Supplemental Table 1. Rev1; Resp3 Demographics, pathology and genetics of case material excluding overlap cases with Murray et al. 2014 [21] HpScl n=14 Not HpScl n=407 P-value 9 (64%) 286 (70%) 0.854 83 (78, 87) 78 (72, 83) 0.007 1050 (965, 1163) 1195 (1080, 1295) 0.003 III (II, VI) III (II, IV) 0.108 5 (2, 5) 3 (2, 5) 0.063 Diffuse 8 (57%) 232 (57%) 0.792 Limbic 6 (43%) 175 (43%) 14 (100%) 59 (14%) <0.001 14/14 (100%) 29/59 (50%) 0.002 Type B/NFT 0/14 (0%) 15/59 (25%) Unclassified 0/14 (0%) 15/59 (25%) TMEM106B, C allele carriers# 7/14 (50%) 213/316 (67%) 0.288 GRN, T allele carriers 8/14 (57%) 161/316 (51%) 0.857 APOE, ε4 allele carriers 10/14 (71%) 147/323 (46%) 0.103 Demographic characteristics Male Age at death, years Post-mortem findings Brain weight, grams Braak NFT stage Thal amyloid-β phase Lewy body subtype TDP-43 positivity Type A Genetic findings Aoki N, et al. p. 4 Supplemental Table 2. Comparison between non-LBD and LBD cohorts without HpScl or severe AD pathology Non-LBD without HpScl (Braak NFT stage 0-III) LBD without HpScl (Braak NFT stage 0-III) n=132 n=297 82 (76, 87) 77 (72, 82) <0.001 Braak NFT stage II (II, III) III (II, III) 0.064 Thal amyloid-β phase 2 (0, 3) 2.5 (2, 3) <0.001 6 (4.5%) 27 (9%) 0.151 Type A 3/6 (50%) 12/27 (44%) 0.970 Type B/NFT 1/6 (17%) 5/27 (19%) Unclassified 2/6 (33%) 10/27 (37%) 1 (0.76%) 8 (2.7%) Age at death, years TDP-43 positivity Pre-HpScl P-value 0.354