Supplementary materials Techno-economic analysis from corn stover to butanol 1. Feedstock composition Table S1. Corn Stover Composition from the 2011 Design and the Present Design Component Present Design (dry wt %) Glucan 35.05 Xylan 19.53 Lignin 15.76 Ash 4.93 Acetatea 1.81 Protein 3.10 Extractives 14.65 Arabinan 2.38 Galactan 1.43 Mannan 0.60 Sucrose 0.77 Unknown soluble solidsb - Total structural carbohydrate 58.99 Total structural carbohydrate + sucrose 59.76 Moisture (bulk wt %) 20.0 a Represents acetate groups present in the hemicellulose polymer; converted to acetic acid in pretreatment. b In the 2002 design, unknown soluble solids were calculated by difference to close the mass balance. This is now included in the extractives component. 2. Feedstock handling Biomass (corn stover) is stored in a central depot and is preprocessed and homogenized to a degree before delivery, such that the biorefinery receives feedstock with known, uniform-format specifications including particle size distribution, moisture content, and bulk density. The equipment consists of weighing and unloading stations for incoming biomass supply trucks, short-term queuing storage, and conveyors for feeding bulk feedstock to the pretreatment reactor. 3. Acid pretreatment The pretreatment reactor is a single horizontal reaction vessel. The reactor is designed for fairly mild conditions at 158°C (316°F) and 18 mg acid/dry g of biomass (about 0.6 wt % acid concentration). Acid is metered to the reaction chamber at a rate proportional to the mass flow rate of feedstock. High-pressure steam is injected into this vessel to maintain temperature. The reactor pressure is held just at the bubble point for the mixture. Heat losses from the reactor are not accounted for in the energy balance calculations. The residence time in the pretreatment reactor is nominally 5 minutes. The reaction conditions are summarized in Table . Table S2. Pretreatment Reactor Conditions Sulfuric acid loading 18 mg/g dry biomassa Residence time 5 minutes Temperature 158°C Pressure 5.5 atm (81 psia) Total solids loading 30 wt % a Additional acid is added downstream of the pretreatment reactor. Table S3 summarizes the reactions and percent conversions that take place in pretreatment. Glucan contained in the hemicellulose side-chains is converted to glucose along with a small portion of the cellulose. Minor hemicellulose carbohydrates (arabinan, mannan, galactan) are assumed to have the same reactions and conversions as xylan. The xylan-to-xylose conversion is an assumed total hydrolysis that also includes an enzymatic component that will be discussed later. The sucrose reaction to HMF and glucose reflects 100% hydrolysis of sucrose to fructose and glucose, followed by complete degradation of the fructose to HMF. Table S3. Pretreatment Hydrolysis Reactions and Assumed Conversions Reaction Reactant % Converted to Product (Glucan)n + n H2O→ n Glucose Glucan 9.9% (Glucan)n + n H2O → n Glucose Oligomera Glucan 0.3% (Glucan)n → n HMF + 2n H2O Glucan 0.3% Sucrose → HMF + Glucose + 2 H2O Sucrose 100% (Xylan)n + n H2O→ n Xylose Xylan 90.0% (Xylan)n + m H2O → m Xylose Oligomera Xylan 2.4% (Xylan)n → n Furfural + 2n H2O Xylan 5.0% Acetate → Acetic Acid Acetate 100% (Lignin)n → n Soluble Lignin Lignin 5.0% a Sugar oligomers are considered soluble but not fermentable. The pretreatment reactor is discharged to a flash tank controlled at 130°C. The slurry from the flash tank goes into the secondary oligomer conversion reaction vessel, where it is held at 130°C for 20–30 minutes. An additional 4.1 mg/g of sulfuric acid is added in the oligomer conversion step, bringing the total acid loading to 22.1 mg/g dry biomass. The oligomer conversion reactor is discharged into another flash tank that operates at atmospheric pressure. After this flash, the hydrolysate whole slurry containing 30 wt % total solids and 16.6 wt % insoluble solids is sent to the conditioning tank. In there, the slurry is diluted with water to slightly greater than 20 wt % total solids to ensure miscibility through enzymatic hydrolysis. Ammonia gas is mixed into the dilution water to raise the hydrolysate pH to 5, with a residence time of 30 minutes. Then pretreated slurry is cooled to 75°C. The flash vapors from the flash tanks are condensed, and the condensate contains volatile, potentially inhibitory organics created in pretreatment and therefore is routed to wastewater treatment. 4. Enzymatic hydrolysis and fermentation The process assumed in this design is known as separate (or sequential) hydrolysis and fermentation (SHF). Enzymatic hydrolysis is initiated while the slurry is still at an elevated temperature after pretreatment and conditioning. A total 5-day SHF process with batch fermentation was selected as a more realistic case for the present design. Enzymatic hydrolysis begins in a continuous, high-solids reactor, saccharified by the enzyme. The viscosity of the mixture drops dramatically, such that it can be pumped to one of several parallel bioreactors. Hydrolysis continues in this vessel until complete, then the slurry is cooled and the ethanologen inoculum is added. The ethanol-containing fermentation broth is emptied to the beer well (storage tank) before being pumped to distillation. The operating conditions and reactions assumed for enzymatic hydrolysis are shown in Tables S4 and S5. Table S4. Enzymatic Hydrolysis Conditions Temperature 48°C (118°F) Initial solids loading 20 wt % total solids (10.6% insoluble/9.4% soluble) Residence time 3.5 days total (84 h) Number and size of continuous vessels 8 @ 950 m3 (250,000 gal) each Number and size of batch vessels 12 @ 3,600 m3 (950,000 gal) each Cellulase loading 20 mg protein/g cellulose Table S5. Enzymatic Hydrolysis Reactions and Assumed Conversions Reaction Reactant % Converted to Product (Glucan)n → n Glucose Oligomer Glucan 4.0% (Glucan)n + ½n H2O → ½n Cellobiose Glucan 1.2% (Glucan)n + n H2O → n Glucose Glucan 90.0% Cellobiose + H2O → 2 Glucose Cellobiose 100% The inoculum protocol for Z. mobilis is a direct transfer of cells without a cell concentration step. In order to provide a required 10% inoculum volume back to the production fermentors, 10% of the saccharified slurry is split off to seed production. Each seed train consists of five reactors operating in batch mode with a 24-hour batch time and an additional 12-hour turnaround time, shown in Table S6. The seed fermentors are cooled with chilled water to maintain the temperature at 32°C (90°F). Table S6. Seed Train Specifications Inoculum level 10 vol % of production vessel size Batch time 24 h Fermentor turnaround time 12 h Number of trains 2 Number of fermentor stages 5 Maximum fermentor volume (F-305) 200,000 gal (757 m3) Corn steep liquor (CSL) loading 0.50 wt % Diammonium phosphate (DAP) loading 0.67 g/L fermentation broth (whole slurry) Table S7 gives the reactions and conversions used in the seed fermentors to describe the microorganism growth and sugar metabolism. Table S7. Seed Train Reactions and Assumed Conversions Reaction Reactant % Converted to Product Glucose + 0.047 CSLa + 0.018 DAP → 6 E Coli + 2.4 H2O Glucose 4.0% Xylose + 0.039 CSL + 0.015 DAP → 5 E Coli + 2 H2O Xylose 4.0% a Corn steep liquor (CSL) and diammonium phosphate (DAP) are both nitrogen sources required for Z. mobilis growth. The stoichiometry shown above is only used to balance the compositions assumed for nonstandard components like cell mass. Besides being fermented to ethanol, sugar may be lost to side products by contaminating microorganisms, shown in Table S8. A total of 3% of the sugars available for fermentation is assumed lost to contamination. Table S8. Co-Fermentation Contamination Loss Reactions Reaction Reactant % Converted to Product Glucose → 2 Lactic Acid Glucose 3.0% 3 Xylose → 5 Lactic Acid Xylose 3.0% 3 Arabinose → 5 Lactic Acid Arabinose 3.0% Galactose → 2 Lactic Acid Galactose 3.0% Mannose → 2 Lactic Acid Mannose 3.0% Fermentation is conducted in a batch system of 950,000-gal vessels. The fermentation residence time is modeled as 72 hours. Inoculum from the seed train is fed at 10 vol % of the hydrolysate flow along with the nutrients corn steep liquor (CSL, 0.25 wt %) and diammonium phosphate (DAP, 0.33 g/L of whole slurry). Table S9 summarizes the conditions in the fermentation vessels and Table S10 lists the reactions and conversions assumed in fermentation. Table S9. Fermentation Conditions Organism E. coli Temperature 32°C (96°F) Initial fermentation solids level 19.8% total solids (14.7% soluble, 5.1% insoluble w/w) Residence time 3 days (72 h) Inoculum level 10 vol % Corn steep liquor (CSL) level 0.25 wt % Diammonium phosphate (DAP) level 0.33 g/L fermentation broth (whole slurry) Table S10. Fermentation Reactions and Assumed Conversions Reaction Reactant % Converted to Product Glucose → Butanol + 2 CO2 Glucose 85.0%b Glucose + 0.047 CSLa + 0.018 DAP → 6 E Coli. + 2.4 H2O Glucose 2.0% Xylose → Butanol + 5 CO2 Xylose 85.0% b Xylose + 0.039 CSL + 0.015 DAP → 5 E Coli. + 2 H2O Xylose 1.9% a Corn steep liquor (CSL) and diammonium phosphate (DAP) are both nitrogen sources required for cell growth. The stoichiometry shown above is only used to balance the compositions assumed for cell mass. Nutrient requirements have not been optimized and a minimal, low-cost nutrient formulation has yet to be defined. b Sugar yield has been changed for sensitivity analysis to evaluate cost impacts. The fermentation broth or “beer” has an iso-butanol concentration of 3.25 wt % and is collected in the beer storage. The butanol purification process was discussed in the manuscript. 5. Downstream processing Wastewater treatment. Plant wastewater streams are treated by anaerobic and aerobic digestion. The methane-rich biogas from anaerobic digestion is sent to the combustor, where sludge from the digesters is also burned. The treated water is suitable for recycling and is returned to the process. Storage. This area provides bulk storage for chemicals used and produced in the process, including corn steep liquor (CSL), ammonia, sulfuric acid, nutrients, water, and ethanol. Combustor, boiler, and turbogenerator. The solids from distillation and wastewater treatment and the biogas from anaerobic digestion are combusted to produce high-pressure steam for electricity production and process heat. The majority of the process steam demand is in the pretreatment reactor and distillation columns. The boiler produces excess steam that is converted to electricity for use in the plant and for sale to the grid. Utilities. This area includes a cooling water system, chilled water system, process water manifold, and power systems.