Appendix S1. Detailed description of methods used to estimate diet and fasting behavior. We examined the contribution of different prey species to the diet of adult and subadult independent polar bears captured in the CS in 2008-2011 based on quantitative fatty acid signature analysis (QFASA; Iverson et al. 2004). The fatty acid compositions of prey were determined from polar bear-killed bearded and ringed seal samples collected during CS capture operations in 2008-2011; samples from bearded, ringed, ribbon, and spotted seals harvested around the community of Point Hope and on Diomede Island (n = 83 bearded seals, 32 ribbon seals, 23 ringed seals, and 24 spotted seals); subsistence-harvested beluga whales sampled in the southern Beaufort Sea and Amundsen Gulf (n = 29; Thiemann et al. 2008b); subsistenceharvested walrus sampled on St. Lawrence Island (n = 102 adult females; US Geological Survey, unpubl. data); and bowhead whales from spring and fall subsistence hunts in 1997-2002 at Barrow and Kaktovik, Alaska (n = 64; Budge et al. 2008). All species were sampled within the range of the CS polar bear population except beluga and bowhead whales which were sampled within areas known to be part of the migration patterns of beluga and bowhead whales that occupy the CS (O’Corry-Crowe et al. 1997; Quakenbush et al. 2009). Several studies have also shown that temporal and spatial variation can often be detected in fatty acid profiles of marine mammals, but between-species differences are far greater than spatial and temporal variation within species (Iverson et al. 2006; Thiemann et al. 2007, 2008b) Lipid was extracted from each polar bear fat biopsy and prey fat sample, and fatty acid methyl esters (FAME) were prepared following Budge et al. (2006). Fatty acid composition of biopsies has been determined to be uniform with depth (Thiemann et al. 2006). FAME were analyzed in duplicate using temperature-programmed gas chromatography on a Perkin Elmer Autosystem II capillary gas chromatograph (GC) with a flame ionization detector (FID), using a 1 polar column (Agilent Technologies, DB-23; 30 m x 0.25 mm ID; Budge et al. 2006). Diet composition was estimated for each polar bear sample using the QFASA model (Iverson et al. 2004; Thiemann et al. 2008a) with diet estimates reflecting the relative biomass of each item. Generalized linear models were used to determine if the contribution of a food item to dietary biomass differed between males and females and subadults and adults or exhibited a trend with body mass. Levels of blood urea nitrogen (BUN) and creatinine were measured in serum blood samples for CS bears captured 2008-2011 using an Abaxis VS2 analyzer (Abaxis, Union City, CA, USA) to identify fasting behavior in individual bears. Serum urea-to-creatinine ratios (U/C) were calculated as urea nitrogen (mg/dl) to 0.466/creatinine (mg/dl) (Nelson et al. 1984) to allow comparison with the frequency of fasting behavior in the SB in 2005-2006 (Cherry et al. 2009). Bears with U/C values ≤ 10.0 were considered to be in a physiological fasting state (Nelson et al. 1984; Derocher et al. 1990). Because bears that have not fed for extended periods of time and have exhausted fat reserves can have high serum U/C (>10.0) ratios as a result of urea recycling and elevated protein catabolism, we also recorded a subjective condition index on a scale of 1-5 (Stirling et al. 2008). A bear that had depleted fat reserves would exhibit a body condition score of 1. LITERATURE CITED Budge SM, Iverson SJ, Koopman HN (2006) Studying trophic ecology in marine ecosystems using fatty acids: a primer on analysis and interpretation. Marine Mammal Science, 22, 759-801. 2 Budge SM, Springer AM, Iverson SJ, et al. (2008) Blubber fatty acid composition of bowhead whales, Balaena mysticetus: Implications for diet assessment and ecosystem monitoring. Journal of Experimental Marine Biology and Ecology, 359, 40-46. Cherry SG, Derocher AE, Stirling I, Richardson ES (2009) Fasting physiology of polar bears in relation to environmental change and breeding behavior in the Beaufort Sea. Polar Biology, 32, 383-391. Derocher AE, Nelson RA, Stirling I, Ramsay MA (1990) Effects of fasting and feeding on serum urea and serum creatinine levels in polar bears. Marine Mammal Science, 6, 196-203. Iverson SJ, Field C, Bowen WD, Blanchard W (2004) Quantitative fatty acid signature analysis: a new method of estimating polar bear diets. Ecological Monographs, 74, 211-235. Iverson SJ, Stirling I, Lang SLC (2006) Spatial and temporal variation in the diets of polar bears across the Canadian arctic: indicators of changes in prey populations and environment. pp. 98-117 in Boyd, I.L., Wanless, S. and Camphuysen (eds.) Top Predators in Marine Ecosystems. Cambridge University Press. Nelson RA, Beck TDI, Steigler DL (1984) Ratio of serum urea to serum creatinine in wild black bears Science, 226, 841-842. O’Corry-Crowe, GM, Suydam RS, Rosenberg A, Frost KJ, Dizon AE (1997) Phylogeography, population structure, and dispersal patterns of beluga whale Delphinapterus leucas in the western Nearctic revealed by mitochondrial DNA. Molecular Ecology 6,955-970. Quakenbush LT, Citta JJ, George JC, Small RJ, Heide-Jørgensen MP (2010) Fall and winter movement of bowhead whales (Balaena mysticetus) in the Chukchi Sea and within a potential petroleum development area. Arctic 63, 289-307. 3 Stirling I, Thiemann GW, Richardson E (2008) Quantitative support for a subjective fatness index for immobilized polar bears. Journal of Wildlife Management, 72, 568-574. Thiemann GW, Iverson SJ, Stirling I (2006) Seasonal, sexual and anatomical variability in the adipose tissue of polar bears (Ursus maritimus). Journal of Zoology, 269, 65-76. Thiemann GW, Iverson SJ, Stirling I (2007) Variability in the blubber fatty acid composition of ringed seals (Phoca hispida) across the Canadian Arctic. Marine Mammal Science 23: 241-261. Thiemann GW, Iverson SJ, Stirling I (2008a) Polar bear diets and arctic marine food webs: insights from fatty acid analysis. Ecological Monographs, 78, 591-613. Thiemann GW, Iverson SJ, Stirling I (2008b) Variation in blubber fatty acid composition among marine mammals in the Canadian Arctic. Marine Mammal Science, 24, 91-111. 4 Appendix S2. Detailed description of statistical methods used to compare body condition and reproduction between the two polar bear populations and time periods. Females accompanied by COY weigh less than lone females or females accompanied by yearlings or two-year-olds (Rode et al. 2010), so we excluded COY and females with COY from our growth curve analysis because they were largely absent from the CS 2008-2011 sample. We controlled for the following covariates: capture date (cdate, because bears were expected to be gaining body condition during the capture season), age (age, which is nonlinearly related to size), and cub age (cubage) and litter size (litsize, which can affect offspring size; Rode et al. 2010). Because environmental variation can affect sex and age classes differently (Rode et al. 2010, 2012), we compared body mass and skull width for separate sex and age classes as well as for all ages combined. Energy density and body length were compared for adults only because in younger bears all morphometric measures (body length, mass and energy density) can be reflective of annual variation in environmental conditions. Therefore, controlling for structural size is less important and additional measures of energy density and body length would be redundant with skull width and body mass measures. Sample sizes were insufficient to compare body size and condition metrics for CS males between periods. We also examined relationships between sea ice metrics and condition and reproduction by including each of our ice metrics, independently, in candidate models. LITERATURE CITED Rode KD, Amstrup SC, Regehr EV (2010) Reduced body size and cub recruitment in polar bears associated with sea ice decline. Ecological Applications, 20, 768-782. Rode KD, Peacock E, Taylor M, et al. (2012) A tale of two polar bear populations: ice habitat, harvest, and body condition. Population Ecology, 54, 3-18. 5 Table S1. The number of polar bears in each sex and age class category captured in the Chukchi Sea (CS) 1985-1994 and 2008-2011 and in the southern Beaufort Sea 2008-2011. Two years of the sampling effort in the CS 1985-1994 occurred in the Russian Chukchi and targeted females with cubs-of-the-year (COY) at den sites whereas the 2008-2011 capture did not include the Russian Chukchi resulting in differences in the occurrence of females with COY in these samples. Adult males were also not targeted in the CS 1986-1994. All measures were not taken for all bears captured. Samples sizes for each measure for each sex/age class are provided in Table 1. COY Yearlings Two year olds Subadult females Subadult males Adult females with COY Adult females with yearlings Adult females with two year olds Lone adult females Adult males Total sample Total sample excluding COY and females with COY Chukchi- Bering Seas 1986-1991 153 33 24 7 9 84 Chukchi-Bering Seas 2008-2011 2 31 20 13 27 2 Southern Beaufort Sea 2008-2011 65 33 7 20 13 34 16 21 45 11 12 8 17 16 370 133 19 65 212 208 82 101 408 309 6 Table S2. Parameters of modified von Bertalanffy growth equations1 for length (y = L(1 – e-k(ta) ) fit to total body length (cm) and zygomatic skull width (cm) measures and for body mass (y = W(1 – e-k(t-a))3 of polar bears captured in in the Chukchi Sea between 2008 and 2011. Data sets for males and females exclude first year cubs since they were not available within the capture sample. All model fits were significant at P < 0.0001. L or W k a F BODY LENGTH Chukchi Sea 2008-11 Females (90) 199.5 ± 2.6 0.37 ± 0.1 -3.2 ± 1.2 F2,79 =45.9 Males (113) 232.6 ± 2.0 0.34 ± 0.04 -2.6 ± 0.4 F2,109 = 269.9 Chukchi Sea 1986-94 Females (108) 191.9 ± 1.3 0.56 ± 0.1 -1.0 ± 0.3 F3,105 = 218.0 Males Data insufficient Southern Beaufort Sea 2008-11 Females (201) 199.9 ± 1.1 0.47 ± 0.05 -2.0 ± 0.3 F2,181 = 431.7 Males (129) 235.5 ± 1.9 0.30 ± 0.03 -2.4 ± 0.4 F2,113 = 447.9 SKULL WIDTH Chukchi Sea 2008-11 Females (90) Males(126) Chukchi Sea 1986-94 Females (128) Males Southern Beaufort Sea 2008-11 Females (214) Males (134) SCALE BODY MASS Chukchi Sea 2008-11 Females (90) Males (121) Chukchi Sea 1986-94 Females (99) Males Southern Beaufort Sea 2008-11 Females (191) Males (130) 21.5 ± 0.25 28.5 ± 0.5 0.44 ± 0.09 0.17 ± 0.02 -1.8 ± 0.6 -4.5 ± 0.6 F2,87 = 102.2 F2,123 = 396.0 21.2 ± 0.20 Data insufficient 0.32 ± 0.04 -2.3 ± 0.5 F2,125 =285.1 21.0 ± 0.2 26.6 ± 0.3 0.3 ± 0.0 0.2 ± 0.0 -3.8 ± 0.4 -3.1 ± 0.4 F2,194 =588.9 F2,116 =499.4 242.5 ± 7.1 556.8 ± 16.5 0.32 ± 0.1 0.16 ± 0.01 -3.4 ± 0.9 -5.2 ± 0.6 F2,82 = 105.1 F2,117 = 553.5 210.3 ± 5.1 Data insufficient 0.5 ± 0.1 -1.6 ± 0.8 F2,98 =76.9 199.6 ± 3.9 432.4 ± 11.2 0.38 ± 0.05 0.26 ± 0.03 -2.8 ± 0.5 -2.4 ± 0.4 F3,177 = 223.1 F2,113 = 375.0 1 t is a fitting constant (years), k is the growth rate constant (per year), and L or W is the asymptotic skull width, body length, or body mass. 7 Table S3 Results from comparisons of body size and condition for polar bears captured in the Chukchi Sea (CS) between 1986-1994 and 2008-2011 using general linear models. Differences between time periods (time) and ice effects were included in separate models. Test statistics (χ2), coefficients (β) and P-values are provided for time and ice. Two ice metrics were examined in separate models. Ice = the number of reduced ice days defined when ice extent (≥50% ice concentration) over the continental shelf was less than 6,250 km2 and mndist = the mean minimum distance between the continental shelf and ice of 50% concentration in September. Time is a categorical variable (1 = 1986-1994 and 2 = 2008-2011) such that a positive β indicates an increase between time periods. Covariates that could affect measures were included initially in models and retained when P >0.10, including capture date (cdate), litter size (litsize), and the age of cubs accompanying a female (cubage). Adult males were not targeted in CS captures 1986-1994; thus sample sizes for most measures were insufficient for comparison. Sex/age class Measure Time effect Ice effect βtime χ2 Ptime Model βice χ2 Pice Model Yearling Females Mass 19.2 5.3 0.02 Time >0.10 None Skull width 1.5 17.6 <0.0001 Time + litsize 0.02 4.1 0.043 Ice 0.003 7.9 0.005 Icedist Yearling Males Mass 31.4 17.2 <0.0001 Time + litsize 0.05 5.7 0.017 Icedist + litsize Skull width 1.5 22.9 <0.0001 Time + litsize None Subadult Females Mass Age 0.33 3.6 0.058 Ice + age + cdate Skull width None 0.013 5.7 0.017 Ice + age 0.001 3.1 0.08 Icedist Subadult Males Mass Age Age Skull width 0.92 5.6 0.018 Time + age + cdate 0.002 6.2 0.013 Icedist + age + cdate Adult Females Mass 29.8 14.0 <0.0001 Time + cdate 0.55 18.4 <0.0001 Ice + cdate + cubage without cubs-ofSkull width 1.0 11.9 0.001 Time + cdate None the-year Length 10.0 46.1 <0.0001 Time + age Adult Males Yrlgs Per Female Yrlg Lit Size Energy D Skull width Cdate None Age None 0.014 0.003 -0.006 4.4 5.5 3.7 0.035 0.019 0.055 Cdate Ice Icedist Ice + age + cdate None 8 Table S4 Results from comparisons of body size and condition for polar bears captured in the Chukchi Sea (CS) and the Southern Beaufort Seas (SB) 2008 and 2011 using general linear models. Population effects (pop) were included in separate models from ice metrics. Test statistics (χ2), coefficients (β) and P-values are provided for pop and ice. Two ice metrics were examined in separate models. Ice = the number of reduced ice days defined when ice extent (≥50% ice concentration) over the continental shelf was less than 6,250 km2 and icedist = the mean minimum distance between the continental shelf and ice of 50% concentration in September. Pop is a categorical variable (1 = CS and 2 = SB) such that a positive β represents CS metrics > SB. Covariates that could affect measures were included initially in models and retained when P >0.10, including capture date (cdate), litter size (litsize), and the age of cubs accompanying a female (cubage). Sex/age class Measure Pop effect Ice effect Yearling Females Yearling Males Subadult Females Subadult Males Adult females without cubs-ofthe-year Adult Males βpop 18.2 χ2 5.4 Ppop 0.02 Model Pop Skull width 0.77 4.8 0.028 Pop Mass 39.5 30.1 <0.0001 Pop + litsize SW 1.3 22.8 <0.0001 Pop + litsize Mass SW Mass SW Mass Skull width 0.99 44.3 0.90 30.5 0.90 7.4 9.8 4.6 23.7 14.5 0.24 0.007 0.002 0.03 <0.0001 <0.0001 None Pop Pop + age Pop + age Pop Pop + cdate Length Energy D Mass 4.0 52.6 26.9 33.5 <0.0001 <0.0001 None Pop Pop + age 25.7 <0.0001 Mass Skull width 1.2 Length Pop Age Age βice -0.24 8.3 -0.01 -0.004 -0.54 -0.11 -0.02 -0.004 0.20 0.01 0.10 χ2 5.4 7.1 4.1 11.8 30.3 10.7 27.1 13.7 13.7 19.1 3.8 Pice 0.02 0.008 0.043 0.001 <0.0001 0.001 <0.0001 <0.0001 <0.0001 <0.0001 0.05 -0.28 -0.014 -0.002 8.3 17.0 5.3 0.004 <0.0001 0.022 -0.036 -0.53 -0.10 -0.012 8.1 13.3 5.0 11.1 0.004 <0.0001 0.025 0.001 Model Ice Icedist Ice Icedist + litsize Ice + litsize Icedist + litsize Ice + litsize Icedist + litsize Icedist + age Icedist + age Icedist + age + cdate None Ice Ice + cdate Icedist + cdate NA Ice + cubage Ice Icedist Ice NA 9 Energy D Yrlg Per Fem Yrlg Lit Size 1.8 29.6 <0.0001 Pop + age 0.4 8.7 0.003 Pop + age + cdate None -0.02 -0.004 -0.01 18.5 6.8 25.2 <0.0001 0.009 <0.0001 Ice + age Icedist + age Ice + age -0.001 -0.001 3.0 4.9 0.08 0.028 Icedist + age + cdate Icedist 10 Table S5. Estimated energy density (MJ/kg, based on models by Molnar et al. 2009) of male and female polar bears from 8 populations across the Arctic based on asymptotic body length and body mass from a modified von Bertalanffy growth curve. Values using calculated and scale body mass are provided for bears captured in the Chukchi (CS) and southern Beaufort Seas (SB). All others use calculated body mass based on the equation of Kolenosky et al. (1989) with the exception of Svalbard where a model developed specifically for the population was used incorporating girth and length (Derocher and Wiig 2002). Data are presented from highest to lowest energy density. Bears in Western Hudson Bay and Foxe Basin were primarily captured in the autumn whereas bears in all other populations were captured in the spring (Derocher 1991). Data from the Central Arctic (including McClintock Channel and Gulf of Boothia populations), Foxe Basin, High Arctic (including the Lancaster Sound population), Western Hudson Bay, Davis Strait and Beaufort Sea (including the northern and southern BS populations) were collected between 1966 and 1991 (Derocher 1991). Data from Svalbard were collected between 1990 and 2000 (Derocher and Wiig 2002). Females Males Central Arctic 22.1 CS 2008-2011 22.9, 23.01 Foxe Basin 21.7 Foxe Basin 22.8 1 CS 2008-11 19.6 Central Arctic 21.8 CS 1986-94 18.91 Davis Strait 21.5 High Arctic 18.6 High Arctic 20.0 Western Hudson Bay 16.9 Beaufort Sea2 20.0 CS 2008-11 16.6 Svalbard 19.5 CS 1986-94 16.5 SB 2008-11 18.4, 19.11 Davis Strait 16.4 Western Hudson Bay 18.7 Beaufort Sea2 15.6 Svalbard 14.4 SB 2008-11 14.01, 14.2 1 2 Scale body mass Bears sampled in the northern and southern Beaufort Sea 11 Table S6. Contribution of prey items to diets of polar bears captured in the Chukchi and Bering seas during the spring based on fatty acid composition of fat biopsies. Data represent the % contribution to polar bear fatty acid profiles and thus reflect the relative contribution to polar bear diets on a biomass basis. Subadults include bears age 2-4 years. Adult Females (55) Adult Males (61) Subadult Females (13) Subadult Males (25) MEAN Bearded Seal 6.5 ± 9.2 20.7 ± 17.3 2.9 ± 3.5 6.8 ± 7.5 11.9 ± 14.5 Beluga Whale 0.5 ± 3.5 1.4 ± 4.5 0.3 ± 0.9 1.8 ± 6.9 1 ± 4.5 Bowhead Whale 5.1 ± 6.0 7.7 ± 7.4 5.8 ± 7.9 4.8 ± 5.7 6.1 ± 6.8 Ringed Seal 87.4 ± 11.2 65.7 ± 17.3 86 ± 26.1 86.4 ± 10.8 78.5 ± 18.5 Walrus 0.6 ± 1.4 4.4 ± 6.0 5 ± 18 0.2 ± 0.5 2.4 ± 6.7 12 Minimum distance to ice of 15% concentration or more Fig. S1. Annual variation in the average minimum distance between sea ice of 15% (a) and 50% (b) concentration and the continental shelf break (300 m isobath) between 1979 and 2010 in the Chukchi and Southern Beaufort Seas. (a) 600 Chukchi Sea Southern Beaufort Sea 500 400 300 200 100 0 1980 1985 1990 1995 2000 2005 2010 Minimum distance to ice of 50% concentration or more Year (b) 700 600 Chukchi Sea Southern Beaufort Sea 500 400 300 200 100 0 1980 1985 1990 1995 2000 2005 2010 13 Fig. S2. Annual variation in the number of reduced ice days defined as days in which there was less than 6,250, 10,000, or 25,000 km2 of either 15% (a) or 50% (b) ice concentration over the continental shelf (<300 m ocean depth) in the Southern Beaufort and Chukchi Seas between 1979 and 2010. (a) (b) 14