Table S7. Gene ontology (GO) results for Restio capensis genetic divergence outlier sequences. Sequences with at least one outlier SNP (with logarithm of
posterior odds >1 identified in BayeScan) were annotated in Blast2GO V.2.7.0. For each significant SNP on each outlier sequence, significant associations
with the explanatory variables GEO, PHY, and ENV in generalized linear mixed models (GLMM) are given. The length of the submitted sequences was the
RAD stack length (90 bp). The species name of the BLASTx hit (E-value of E-06 and HSP cutoff of 25) with the lowest E-value (Top hit species) is given along
with a short BLAST-search derived sequence description and the number of hits obtained (maximum reported = 20). As a measure of BLAST-search quality,
the minimum E-value and the mean similarity (Mean sim.) between query and subject sequences are reported. For each sequence, the absolute numbers of
GO terms (#GOs) and the GO term descriptions (GOs) are given. Enzyme codes are reported when available.
Sequence
with outlier
SNP_NO
44
GLMM
Top hit species
Sequence description
#Hits
Min.
E-value
Mean
sim.
#GOs
GOs
Enzyme
code
ENV, GEO
Oryza sativa
Japonica Group
ras-related protein rhn1
20
3.70E-14
99.60%
5
-
139
none
Brachypodium
distachyon
pumilio-family rna-binding
domain-containing protein
20
8.60E-11
90.55%
1
C:endosome; F:GTP binding; C:plasma membrane;
P:small GTPase mediated signal transduction;
P:protein transport
F:RNA binding
68, 69
ENV
Cicer arietinum
xyloglucan
galactosyltransferase
katamari1-like
20
1.50E-10
95.75%
12
-
111, 112
GEO
Zea mays
serine palmitoyltransferase
20
1.40E-09
91.70%
9
104
none
Brassica rapa
subsp. chinensis
atpase subunit 6
20
1.50E-09
96.00%
5
C:Golgi cisterna membrane; C:integral to Golgi
membrane; P:endomembrane system organization;
C:endosome; C:cytoplasmic membrane-bounded
vesicle; P:protein glycosylation; P:salicylic acid
mediated signaling pathway; C:trans-Golgi network;
P:unidimensional cell growth; P:xyloglucan
biosynthetic process; F:transferase activity,
transferring glycosyl groups; P:fucose biosynthetic
process
F:transaminase activity; C:integral to membrane;
P:sphingosine biosynthetic process; F:serine Cpalmitoyltransferase activity; P:photomorphogenesis;
P:pollen development; C:vacuole; F:pyridoxal
phosphate binding; C:endoplasmic reticulum
membrane
F:hydrogen ion transmembrane transporter activity;
C:mitochondrial inner membrane; C:integral to
membrane; P:ATP synthesis coupled proton transport;
C:proton-transporting ATP synthase complex, coupling
factor F(o)
-
EC:2.6.1.0;
EC:2.3.1.50
-
14
none
Fragaria vesca
subsp. vesca
wd repeat-containing
protein 91 homolog
20
3.10E-09
94.80%
0
-
-
110
none
Phaseolus
vulgaris
lrr receptor-like serine
threonine-protein kinase
rch1-like
20
3.70E-09
95.85%
6
EC:1.3.1.74;
EC:2.7.11.0
20
ENV
Zea mays
protein kinase and pp2clike domain-containing
15
6.30E-09
98.93%
5
P:protein phosphorylation; F:ATP binding; F:2-alkenal
reductase [NAD(P)] activity; C:integral to membrane;
F:protein serine/threonine kinase activity;
P:oxidation-reduction process
F:metal ion binding; F:ATP binding; F:protein
serine/threonine phosphatase activity; P:activation of
MAPKK activity; F:MAP kinase kinase kinase activity
8
none
Sorghum bicolor
glycerol-3-phosphate
dehydrogenase
mitochondrial
13
2.50E-08
93.23%
9
EC:1.1.5.3
155
none
Zea mays
tpa: cbl-interacting protein
kinase family partial
1
2.20E-07
86.00%
0
P:glucose catabolic process; F:glycerol-3-phosphate
dehydrogenase activity; C:glycerol-3-phosphate
dehydrogenase complex; C:mitochondrial inner
membrane; P:glycerophosphate shuttle; P:glycerol
catabolic process; P:glycerol-3-phosphate metabolic
process; P:proline transport; P:glucosinolate
biosynthetic process
-
144
ENV
Setaria italica
probable peptide nitrate
transporter at1g59740-like
isoform x2
2
2.30E-07
89.00%
0
-
-
17
none
Lotus japonicus
low quality protein: gdsl
esterase lipase at5g33370like
3
2.40E-07
95.00%
0
-
-
56
none
Aegilops tauschii
hypothetical protein
F775_28489
2
3.20E-07
90.00%
0
-
-
132
ENV
Oryza sativa
Japonica Group
receptor-like serine
threonine expressed
1
3.90E-07
92.00%
3
F:protein kinase activity; P:protein phosphorylation;
F:ATP binding
-
92, 93
ENV
Sorghum bicolor
hypothetical protein
SORBIDRAFT_01g024706
1
8.90E-07
96.00%
2
P:base-excision repair; F:catalytic activity
-
EC:2.7.11.25
-