Electronic Supplementary Material Appendix 1 Habitats definition. Characterization of the habitat types used in this study. Habitat type Definition Dominant species Heather moorland (15132 km2) A semi-natural habitat dominated by a range of heathland dwarf shrubs. Abundant and widespread habitat throughout red deer range in Scotland. Large tracts of heather moorland are designated as Sites of Special Scientific Interest (SSSI), and the UK holds 75% of the world's remaining heather moorland Common heather (Calluna vulgaris), bell heathers (Erica spp.), blaeberry (Vaccinium myrtillus). Peatland (6214 km2) A range of vegetation found on blanket peat in the hills and uplands and raised bogs of the lowlands. Blanket bog and bog heather moor are the principal plant communities. Increasingly protected by both national and international conservation designations, such as SSSI and Special Area of Conservation (SAC). A range of plant communities characterise this unit, from wind-clipped heather moorland at the low levels to true alpine communities on exposed summits. The montane zone in Scotland lies above the potential tree-line (700-800m, but descending to 200m in the north). Areas characterised Common heather (Calluna vulgaris), cotton-grasses (Eriphorum spp), deer-grass (Trichophorum cespitosum), flying bent (Molinia caerulea) Montane (2576 km2) Smooth Sward aerial biomass (g DM/m2) ± s.e. (averaged across months) Calluna moor eastern Grampians, Scotland, May to November (Grant et al. 1987) Tall heather = 891± 48 Short heather = 756 ± 16 Shelter and food availabilit Blanket bog, Argyll, Scotland, April to October (Grant et al. 1987) Total biomass = 462 ± 56 Current shoot (heaths) and green shoots (grasses and sedges) = 122 ± 15 Generally more exposed landscape (Mean TOPEX score = 24, s.e. = 0.01) than heather moorland, Calluna stands offer less thermal protection here as sward height is shorter and Calluna plants are more interspersed. Plants less preferred than in heather moorland although young shoots of Eriophorum vaginatum and Molinia are utilised (Mitchell et al. 1977). Extremely variable depending on levels of exposure. Characterised by low-alpine prostate Calluna vulgaris heathland (Britton and Fisher 2007) Fescues Relatively exposed (*Mean TOPEX score = 43, s.e. = 0.01) but unmanaged heather can provide good wind shelter (mature heather sward height up to 70 cm). Dwarf shrubs provide browsing winter food (Staines 1976; Mitchell et al. 1977; Staines and Crisp 1978; Staines et al. 1982). Patches of grass are heavily used in these habitats (Hester and Baillie 1998; Hester et al. 1999). Very exposed (Mean TOPEX score = 37, s.e. = 0.03). More likely to be utilised in summer than in winter. High browsing and grazing impact in areas south of the Scottish Highlands (Thompson and Brown 1992; Britton and Fisher 2007) Upland Agrostis-Festuca Preferred plants, high grass (1423 km2) Rough grass (927 km2) by unimproved natural grassland, most frequently in a hill or upland situation, with a high proportion of palatable grasses. Vegetation of this type is the best pasture of many of the hill areas and is often heavily grazed. Often present on mineral soils in valley floors. Grasslands that have not undergone agricultural improvement by way of the application of fertilizers, pesticides, drainage or reseeding. (Festuca spp), bents (Agrostis spp), sweet vernal (Anthoxanthum odoratum) sward in Fife, Scotland, May to October (Grant et al. 1985) Flying bent (Molinia caerulea) predominant on peaty soils and hill peat of the wetter western areas of Scotland, white bent (Nardus stricta) - more evident on the 'drier' soils in the east Upland Molinia sward in Roxburghshire, Scotland, June to October (Grant et al. 1985) Total biomass = 368 ± 87 Live biomass = 184 ± 43 utilization in late spring and summer (Mitchell et al. 1977; Osborne 1984). Exposure depending on topography, in general poor thermal and wind protection. (Mean TOPEX score = 48, s.e. = 0.04) Exposure depending on topography, in general poor thermal and wind protection. Plants utilization see Peatland. Total biomass = 238 ± 29 Live biomass = 155 ± 33 Upland Nardus sward in Fife, Scotland, May to November (Grant et al. 1985) Total biomass = 1412 ± 247* Live biomass = 375 ± 72* (*) biomass of tussocks and between-tussock has been pooled. Improved grass (1406 km2) Woodland (1135 km2) Grassland containing species of grass and clover of high grazing value that are generally established by reseeding and maintained by grazing control and use of lime and fertilizers. Scarce throughout red deer range. Areas of coniferous trees, broad-leaved trees or woods of mixed species. Atlantic oak woodlands of the west coast are of international importance due to the diversity of bryophytes, lichens and ferns. Native Perennial rye grass (Lolium perenne), clover (Trifolium spp.) Sessile oak (Quercus petraea), downy birch (Betula pubescens), Scots pine (Pinus sylvestris) Good thermal and wind shelter (Staines 1976; Mitchell et al. 1977). Utilisation of saplings higher in winter than in summer (Hester et al. 1996), little is known about the use of grasses and forbs in Scottish woodland. Cliffs (286 km2) Water (408 km2) Bracken (110 km2) Scrub (12 km2) Others (1216 km2) (Caledonian) pinewoods are included as priority habitats in the European Community Habitats Directive. Areas of exposed rock, such as cliff faces or scree. Areas of fresh water of more than 2ha. Areas dominated by bracken (Pteridium aquilinum) forming greater than 50% ground cover have been mapped primarily on upland farms or moorland fringes or steep slopes extending along valley sides. Areas of short, stunted trees, bushes, or shrubs growing thickly together. A catch all for LCS88 classes which occupied a very small proportion of the areas occupied by red deer (e.g. arable, marshes, dune, rural development, etc). Rock Fresh water Bracken (Pteridium aquilinum) Gorse (Ulex europaeus), broom (Cystisus scoparius), juniper (Juniperus communis) Not relevant * TOPEX is a measure of topographic exposure for a location, calculated by summing the angle to the skyline in the eight cardinal directions (Quine & White 1998); thus, more exposed locations will have a lower TOPEX score. Using a 50m resolution TOPEX raster dataset, we calculated an average TOPEX value for each of the 4 main landcover classes within the nDCAs used the in the study. TOPEX standard error is calculated for the number of polygons of each habitats. References Britton AJ, Fisher JM (2007) Interactive effects of nitrogen deposition, fire and grazing on diversity and composition of low-alpine prostrate Calluna vulgaris heathland. Journal of Applied Ecology 44:125-135 Grant SA, Suckling DE, Smith HK, Torvell L, Forbes TDA, Hodgson J (1985) Comparative studies of diet selection by sheep and cattle - the hill grasslands. Journal of Ecology 73:9871004 Grant SA, Torvell L, Smith HK, Suckling DE, Forbes TDA, Hodgson J (1987) Comparative studies of diet selection by sheep and cattle - blanket bog and heather moor. Journal of Ecology 75:947-960 Hester AJ, Baillie GJ (1998) Spatial and temporal patterns of heather use by sheep and red deer within natural heather/grass mosaics. Journal of Applied Ecology 35:772-784 Hester AJ, Gordon IJ, Baillie GJ, Tappin E (1999) Foraging behaviour of sheep and red deer within natural heather grass mosaics. Journal of Applied Ecology 36:133-146 Hester AJ, Mitchell FJG, Kirby KJ (1996) Effects of season and intensity of sheep grazing on tree regeneration in a British upland woodland. For Ecol Manage 88:99-106 Mitchell B, Staines BW, Welch D (1977) Ecology of red deer: a research review relevant to their management in Scotland. Institute of Terrestrial Ecology, Cambridge Osborne BC (1984) Habitat use by red deer (Cervus elaphus L) and hill sheep in the west highlands. Journal of Applied Ecology 21:497-506 Staines BW (1976) The use of natural shelter by Red deer (Cervus elaphus) in relation to weather in North-east Scotland. J. Zool. Lond. 7.5:1-8 Staines BW, Crisp JM (1978) Observations on food quality in Scottish red deer (Cervus elaphu) as determined by chemical analysis of the rumen contents. J. Zool. , Lond. 185:253259 Staines BW, Crisp JM, Parish T (1982) Differences in the quality of food eaten by red deer (Cervus elaphus) stags and hinds in winter. Journal of Applied Ecology 19:65-77 Thompson DBA, Brown A (1992) Biodiversity in montane Britain: habitat variation, vegetation diversity and some objectives for conservation. 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