Genetics Review Spring 2015 – (This is not all-inclusive but a good review!) Central Dogma of Molecular Biology: DNA ---transcription--- RNA ---- (AAs)--translation ---Proteins DNA – chapter 12 Role of DNA o Store all genetic material, including the instructions to make proteins o Be able to copy that information for new cells o Pass on the information to offspring Structure o Made of nucleotides – phosphate, sugar, base o Form of double helix – two strands that bond together with bases in the middle and are twisted. o Structure was discovered by Watson and Crick. o Bases are Adenine, Thymine, Guanine and Cytosine. A bonds with T and G bonds with C o Chargaff’s Rule: since A and T bond, they will be found in the same concentrations in DNA. Same with G and C. So … [A]=[T] and [G]=[C] o Bases are held together by weak hydrogen bonds Weak bonds allow them to come apart so DNA can be copied o Backbone (phosphate and sugar) is help by strong covalent bonds Replication – process to make a full copy of DNA 1. DNA unwinds and unzips – used enzyme helicase 2. New DNA nucleotides are brought in to complement the original strands – enzyme DNA polymerase a. A leading strand copies easily from the 5’ to 3’ end b. The lagging strand also has to copy from the 5’ to 3’ end, but creates Okazaki fragments in the process. These fragments have to be linked together – by enzyme ligase. 3. DNA polymerase enzyme then proofreads the two new segments* *Each new segment has one original strand and one new strand. Base pairs – DNA to mRNA A-U T-A G-C C-G Transcription – in nucleus – page 364 in text 1. DNA unwinds – helicase 2. DNA unzips – helicase 3. New RNA nucleotides come in and complement DNA – RNA polymerase 4. Introns spliced out and stay in nucleus 5. Exons link together 6. Cap and tail added for protection 7. mRNA is done and leaves nucleus Translation – in ribosome (in cytoplasm or on ER) - page 368 in text 1. mRNA leaves nucleus and goes to ribosome (made of rRNA and proteins) 2. tRNA transfers the AA from cytoplasm to ribosome 3. codon of mRNA bonds with anticodon of tRNA 4. next tRNA brings next AA 5. the AAs peptide bond together 6. 1st tRNA releases its AA 7. Process continues until the mRNA codon is a Stop Codon – no AA comes in 8. String of AAs (polypeptide chain) leaves ribosome, folds special way and is now a protein! DNA: mRNA: codons: TACGGCCCCTACCCGATT AUGCCGGGGAUGGGCUAA AUG CCG GGA AUG GGC UAA amino acids: Met-Pro-Gly-Met-Gly- Stop Protein: lactase – enzyme that breaks down lactose 1000s of AAs long, so how many DNA bases?? 3DNA bases = 3mRNA bases = 1 codon = 1 AA (don’t forget about introns/exons!) DNA: mRNA: codons: TACGGCTCTTACCCGATT AUGCCGUGAAUGGGCUAA AUG CCG UGA AUG GGC UAA amino acids: Met-Pro-Stop Protein: lactase – IS NOT MADE!!!!!!! This is a mutation! Mutation – change in DNA that affects protein Can be positive, negative or neutral. Example Original DNA: TACGGCCCCTACCCGATT mRNA: AUGCCGGGGAUGGGCUAA codons: AUG CCG GGG AUG GGC UAA amino acids: Met-Pro-Gly-Met-Gly- Stop The cat ate the rat . Different types of mutations 1. Gene mutation (point mutation) a. Substitution DNA: TACGGCTCCTACCCGATT mRNA: AUGCCGUGGAUGGGCUAA codons: AUG CCG UGG AUG GGC UAA amino acids: Met-Pro-Stop Mutation: The cat. (WHAT??? What did the cat do?????) b. Insertion = frameshift mutation Mutated DNA: TACGAGCCCCTACCCGATT mRNA: AUGCUCGGGGAUGGGCUAA codons: AUG CUC GGG GAU GGG CUA A amino acids: Met-Leu-Gly-Asp-Gly- Leu Mutation: The cMa tat eth era t (WHAT???) c. Deletion = frameshift mutation Mutated DNA: TAC___GCCCCTACCCGATT mRNA: AUG___CGGGGAUGGGCUAA codons: AUG CGG GGA UGG GCU AA amino acids: Met-Arg-Gly-Try-AlaMutation: The ata tet her at (WHAT???) 2. Chromosomal mutation – (page 374 in text) a. Deletion – all or part of chromosome is missing Ex. – Human with 45 chromosomes – female with only one X Remember: Females have XX sex chromosomes – so females have 2 copies of all genes on the X chromosome Males have XY sex chromosomes - Y chromosome has gene to create testicles b. Duplication – extra chromosome or part of chromosome Ex. – Human with 3 copies of chromosome 21 – Down Syndrome c. Inversion – gene order is switched This can turn genes on that should be off, or turn genes off that should be on! Do you want your tumor suppressor gene on (expressed) or off??? d. Translocation – like “crossing over” of nonhomologous chromosomes Ex. Parts of chromosome 9 & 22 swap causing leukemia Some helpful vocab: Chromosome - Lots of DNA and histone condensed Chromatin = DNA and histone (page 280) Chromatid = the 2 arms of a chromosome in Prophase Gene – segment of DNA that codes for a protein Allele – different forms of a gene Genotype – combination of alleles (one from mom, one from dad) Phenotype – how the genotype is expressed (or what the protein does) Ex – Gene for cystic fibrosis is found on a chromosome. Everyone has 2 copies of the gene. (FF) Homozygous Dominant - both copies of the allele form the protein that allows ions to cross the membrane – you are fine. (Ff) Heterozygous - One copy forms the protein and one doesn’t - you are fine because you form the protein. However, you are a CARRIER of a bad variant of the gene and can pass that to your kids. (ff) Homozygous Recessive – both copies do not form the protein, so you have no way to allow certain ions to cross the membrane – you have cystic fibrosis. What about sickle cell disease? Do you have the gene? Yes!! Do you have the allele for the disease? RR– red blood cells form normally. No problems. Rr – some RBCs form in sickle shape but no problem. In fact, for some reason, there is a resistance to malaria associated with this genotype! rr – RBCs form in sickle shape causing lots of pain, especially in joints. CF and SCD both follow Mendel’s Rule of Dominance. Some alleles are dominant over others. Recessive alleles are ONLY expressed if no dominant allele is present. CF and SCD both are controlled by one gene. But WAIT … there’s more! Codominance – R (red) allele and W (white) allele are both expressed equally. So Genotype - RW Phenotype – red and white stripes Incomplete Dominance - R (red) allele and W (white) allele are both expressed and BLEND together. So Genotype - RW Phenotype – pink Polygenic Traits- characteristics controlled by more than one gene. Ex. Skin color. Four genes – all dominant/recessive. AABBCCQQ – darkest color aabbccQQ – lightest color AaBbCcQQ – somewhere in between AABBCCqq –albino because there is no “Q” to allow for the expression of ANY color! (Qq allows for color expression.) Multiple Alleles – more than just 2 forms of the gene. Ex. – Blood type (which is also codominant) Allele A – produces an A protein Allele B - produces a B protein Allele O – does not produce a protein Genotypes Phenotypes AA, AO Produces A protein BB, BO Produces B protein AB Produces both A & B protein OO Produces NO protein Punnett squares are used to determine the probability of genotype of offspring. Ex. What is the probability that parents with genotypes AO and AB will produce offspring with the phenotype B blood type? AO x AB A O A B