GHS Honors Biochemistry 2014-2015 UNIT I: Enhancing and Evolving to “Perfection”? IN YOUR TEXTBOOK: Concepts of Evolution Human Evolution Molecular Biology of the Gene Biotechnology Meiosis and the Sexual Life Cycle Patterns of Inheritance Mutations, Radiation, and DNA Repair SUPPLEMENTAL READING/SOURCES: Science Magazine Ardipithecus Issue (Oct. 2, 2009. Vol 326, Issue 5949. p. 1-188) Science Daily Online (http://www.sciencedaily.com/) pGLO Bacterial Transformation Kit – Instruction Booklet Sordaria Genetics Biokit Manual UNDERSTANDINGS: Small changes have big effects as species evolve We have the ability to manipulate the structures and functions of living organisms Manipulation of living organisms may have unanticipated effects There are limits to our ability to manipulate the functions of biological structures Balance is necessary for the health of living systems We must make informed decisions despite ambiguous evidence Relative risk assessments must be made using the best available data ESSENTIAL QUESTIONS: How does structure determine function? How are biological structures formed and maintained? How do biological structures change over time? What happens when things go wrong? How are biological structures replicated? What does it mean to be alive? Are there limits to our performance? How are we genetically modifying things? How are biochemical processes harnessed to meet the needs of human society? STUDENTS WILL KNOW: STUDENTS WILL BE ABLE TO: Explain how the processes of genetic mutation and natural selection are related to the evolution of species. Describe how structural and behavioral adaptations increase the chances for organisms to survive in their environments. Describe and evaluate heritable structural, biochemical, and/or behavioral adaptations that distinguish modern humans from more primitive hominids. Explain how the current theory of evolution provides a scientific explanation for fossil records of ancient life forms. I. Natural selection and human evolution a. Variation and natural selection are the driving forces behind evolution. b. Biologists use a variety of evidences to demonstrate evolutionary history and relationships, including fossil, anatomical and biochemical evidence. c. Modern humans have accumulated heritable structural, biochemical, and behavioral adaptations that increase the likelihood of survival. II. Human impact on evolution: antibiotic resistance a. Human activity has unanticipated effects on the evolution of organisms. b. Antibiotic resistant bacteria have arisen as a direct result of human use of antibiotics. c. Antibiotics can be used to treat bacterial infections (but not viral infections) in humans due to differences and similarities between eukaryotic and prokaryotic cells (including, plant, animal, and bacterial cells). Describe antibiotic resistance as an example of evolution by natural selection. Describe human activities that have contributed to the evolution of antibiotic resistance, evaluate its impact on society, and develop strategies to prevent the spread of antibiotic resistance. Conduct an experiment to evaluate the spread of antibiotic resistance in cultured bacteria. Describe similarities and differences between eukaryotic and prokaryotic cells (including, plant, animal, and bacterial cells) and relate these differences to the use of antibiotics to treat infectious diseases. III. Human impact on evolution: genetically modified organisms (GMOs) a. Humans are intentionally altering genes and traits in organisms by genetic engineering. b. Humans genetically engineer organisms using various techniques and tools. c. There are benefits and potential risks of genetic engineering. IV. DNA structure a. The type of bonds within DNA and how they impact the structure and function of DNA. b. The four different nucleotide monomers can be assembled into an infinite variety of linear DNA polymers. c. How the process of DNA replication provides both heritability and variation. V. Protein synthesis a. Specific proteins perform many functions in cells. b. The Central Dogma (DNA to RNA to protein) represents a major framework for understanding how genotype determines phenotype. c. A change in the nucleotide sequence (mutation) of a gene may cause a change in the function of a protein, thereby changing the phenotype of an organism. VI. Inheritance a. Variation is generated by meiosis and fertilization in sexually reproducing organisms. b. In some instances, we can predict patterns of inheritance for defined traits using Punnett Squares and pedigrees. c. Many factors determine whether a genetic disorder will persist in the human population. Describe, in general terms, how the genetic information of organisms can be altered to make them produce new materials. Explain the risks and benefits of altering the genetic composition and cell products of existing organisms. Research and defend a position in favor of or opposed to the use of genetically modified foods (GMFs). Label and describe a 2D representation of the structure of DNA, including the component parts and types of chemical bonds involved. Explain how nucleotide monomers are assembled into an infinite variety of linear DNA polymers. Explain how the chemical structure of the DNA polymer affects its properties and function. Describe the general role of DNA and RNA in protein synthesis. Compare alleles of a gene and determine if the nucleotide sequence change will change the amino acid sequence of the encoded protein. Explain how meiosis and sexual reproduction contribute to the genetic variation of organisms. Use the Punnett Square technique to predict the distribution of traits in mono- and di-hybrid crosses. Deduce the probable mode of inheritance of a trait (dominant or recessive) from pedigree diagrams showing phenotypes. Describe the differences between genetic disorders and infectious diseases. Unit Vocabulary Part I: Natural selection and human evolution (USG pp. 1-5) 1. Evolution 6. Natural selection 2. 3. 4. 5. 7. 8. 9. 10. Species Population Adaptation Variation “Fitness” Fossils / fossil record Biochemical evidence Anatomy 11. Homologous structures 12. 13. 14. 15. Analogous structures Vestigial structures Evolutionary tree Common ancestor Part II: Human impact on evolution: antibiotic resistance (USG pp. 5-9) 1. Antibiotic 2. Antibiotic resistance 3. Pathogen 4. Bacteria 5. Virus 6. Fungus 7. Prokaryotic cell 8. Eukaryotic cell 9. E. coli Part III: Human impact on evolution: genetically modified organisms (GMOs) (USG pp. 9-13) 1. E. coli 2. Plasmid 3. Restriction enzyme 4. DNA ligase 5. Recombinant DNA 6. Transformation 7. Genetically modified organism 8. Genetically modified food Part IV: DNA structure (USG pp. 14-17) 1. DNA 2. Nucleotide 3. The 3 parts of a nucleotide are… 4. The 5 nitrogenous bases are… 5. DNA Replication 6. Helicase 7. DNA polymerase 8. Chromosome Part V: Protein Synthesis (USG pp. 17-21) 1. 2. 3. 4. 5. Gene Protein Polypeptide Amino acid Transcription 6. 7. 8. 9. 10. Translation Codon RNA polymerase Messenger RNA (mRNA) Ribosome 11. 12. 13. 14. Mutation Mutagen Point mutation Frameshift mutation Part VI: Inheritance (USG pp. 21-29) 1. Gene 2. Gametes 12. Meiosis 13. Fertilization 23. Allele 24. Dominant 3. 4. 5. 6. Somatic cells Asexual reproduction Sexual reproduction Karyotype 14. 15. 16. 17. Zygote Independent orientation Crossing over Genetic recombination 25. 26. 27. 28. Recessive Heterozygous Homozygous Punnett square 7. 8. 9. 10. 11. Homologous chromosomes Sex chromosomes Autosomes Diploid Haploid 18. 19. 20. 21. 22. Nondisjunction Down syndrome Trait Phenotype Genotype 29. 30. 31. 32. Monohybrid cross Dihybrid cross Carrier Pedigree