Supplementary Information Refractometric Biosensing based on Optical Phase Flips in Sparse and Short-Range-Ordered Nanoplasmonic Layers RUNNING TITLE: Biosensing based on Optical Phase Flips Mikael Svedendahl*, Ruggero Verre, and Mikael Käll* Department of Applied Physics, Chalmers University of Technology, 412 96 Göteborg, Sweden *Correspondence: Mikael Svedendahl and Mikael Käll Applied Physics Department, Chalmers University of Technology 412 96 Göteborg, Sweden. Phone: +46 (0) 31 772 1000 Fax: +46 (0) 31 772 20 90 Email: mikael.svedendahl@chalmers.se, mikael.kall@chalmers.se S1. Optical Properties of the Metamaterial Layers The Hole Mask Colloidal Lithography fabrication process provides samples with robust optical properties, as indicated by the similar transmission spectra measured from three different samples in Figure S1. There are, however, small deviations in the exact resonance wavelength and amplitude, which varies with about 2 nm and 0.2%, respectively. Zero reflection can be achieved for all samples. However, the small deviations need to be compensated for by slight tuning of the lasing wavelength of the diode laser and selecting the proper incidence angle, i, in order to minimize the reflection. The analytical theory used to calculate the spectra in Figure 3-5 in the main text from Equation (1) and (2), require and as input. We used the same methodology as described in reference [1] and [2], where a transmission spectrum at normal incidence is used to fit to experimental data. The polarizability was modelled using the formulas for an oblate spheroid in the quasistatic limit together with the modified long wavelength approximation3, 4 and the Drude approximation for the permittivity of gold.5 We used the size and surface density of the nanoparticles acquired from the SEM images in Figure 2 to calculate the polarizability and the transmission spectrum for the layer at a glass/water interface. The ellipsoid model is based on particles in a homogeneous medium while the actual nanoparticles investigated are situated at a dielectric interface. As seen in Figure S2, by tuning the effective refractive index surrounding the nanoparticles, we can match the resonance wavelength to the experimental data. Here, an effective refractive index neff = 1.47 was used, which can be compared to the average refractive index of the two media, which is 1.43 (nglass = 1.52 and nwater = 1.33). Thus, one interpretation might be that the near-fields surrounding the nanoparticles are not symmetrically distributed, but that more field intensity is located within the high-index support. For further details regarding the polarizability model, we refer the reader to reference [1] and [6]. Figure S3 show the phase response of the single particle polarizability together with the phase difference between p- and s-polarized reflections, , at i = 55°. The rapid response in is due to the low reflection associated with the s-polarization. The maximum phase shift per wavelength is 0.8 and 140 °/nm for and , respectively. Thus, the zero reflection effect leads to a 175 times steeper phase response in reflection, compared to the intrinsic phase response associated with the resonance of the individual nanoparticles. Figure S 1. Optical transmission spectra of the samples shown in Figure 2c in the main text measured in air. Figure S 2. Experimental transmission spectrum for a sample in water together with the analytical approximation, used to calculate the reflection-properties in Figure 3-5 of the main text. Figure S 3. A comparison between the phase responses from the polarizability, , and the reflection at i = 55°, using the modified Fresnel formulas. S2. Bulk Refractive Index Sensitivity The bulk refractive index sensitivity is often measured by tracking the plasmon resonance wavelength through extinction or reflection spectra as the refractive index of the ambient medium is changed. The extinction (measured in transmission at i = 0°) maxima red shifted about 130 nm/RIU, see Figure S4. However, the shifts in reflection depend on the incidence angle, in accordance with the modified Fresnel coefficients given in Equation (1)-(2) and the Fano description of the reflections. Therefore, as an increased refractive index of the ambient can lead to a decreased refractive index contrast of the boundary, and thus to a lower reflection of the bare interface, the minimum wavelength in reflection can even blue shift with increasing refractive index, as seen in Figure S5. Figure S 4. Bulk refractive index sensitivity measurements in extinction mode. (a) Varying the bulk refractive index from water to 10% ethylene glycol, (b) the resonance wavelength redshifted 1.3 nm yielding an approximate sensitivity of about +130 nm/RIU. Figure S 5. Bulk refractive index sensitivity measurements in reflection mode. (a) Varying the bulk refractive index from water to 10% ethylene glycol, (b) the resonance wavelength blueshifted 0.9 nm yielding an approximate sensitivity of about -90 nm/RIU. S3. Fringe Tracking Stability In order to verify the stability (precision) of the measurements and to investigate the possible signal-to-noise performance of local refractive index measurements, the phase of the fringes were studied as a function of time. The phase was determined by fitting the experimental data to the function 𝐼 = (𝐴 + 𝐵𝑥) sin(𝑥𝐶 + 𝐷), where A and B sets the amplitude of the sinusoidal pattern, C is associated with the frequency of the pattern with respect to the pixel values, x, and D is the phase. Figure S 6. Stability of phase measurements. The phase of the sinusoidal fringe pattern (a) was measured over time (b). The standard deviation during 100 min is below 0.01° References 1. Svedendahl M, Käll M. Fano Interference between Localized Plasmons and Interface Reflections. ACS Nano 2012; 6(8): 7533-7539. 2. Svedendahl M, Johansson P, Käll M. Complete Light Annihilation in an Ultrathin Layer of Gold Nanoparticles. Nano Lett 2013; 13(7): 3053-3058. 3. Yang WH, Schatz GC, Vanduyne RP. Discrete Dipole Approximation for Calculating Extinction and Raman Intensities for Small Particles with Arbitrary Shapes. J Chem Phys 1995; 103(3): 869-875. 4. Zeman EJ, Schatz GC. An Accurate Electromagnetic Theory Study of Surface Enhancement Factors for Ag, Au, Cu, Li, Na, Al, Ga, In, Zn, and Cd. J Phys Chem 1987; 91(3): 634-643. 5. Blaber MG, Arnold MD, Ford MJ. Search for the Ideal Plasmonic Nanoshell: The Effects of Surface Scattering and Alternatives to Gold and Silver. 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